IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.69   STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
218	 39.85	0	267762..269096	-	444	197284133	mltD	PMI0224	-	membrane-bound lytic murein transglycosylase D precursor
219	 35.19	0	269170..269925	-	251	197284134	gloB	PMI0225	-	hydroxyacylglutathione hydrolase
220	 39.62	0	270041..270676	+	211	197284135	-	PMI0226	-	hypothetical protein
221	 42.50	0	270701..271180	-	159	197284136	rnhA	PMI0227	-	ribonuclease HI
222	 41.24	0	271246..272004	+	252	197284137	dnaQ	PMI0228	-	DNA polymerase III, epsilon subunit
223	 43.03	0	272591..273673	+	360	197284138	-	PMI0229	-	ABC transporter, permease protein (FecCD transport family)
224	 41.26	0	273673..274467	+	264	197284139	-	PMI0230	-	ABC transporter, ATP-binding subunit
225	 37.16	0	274538..275374	-	278	197284140	-	PMI0231	-	citrate lyase beta chain
226	 41.99	0	275588..277471	+	627	197284141	-	PMI0232	-	siderophore biosynthesis protein
227	 42.52	0	277482..279593	+	703	197284142	-	PMI0233	-	TonB-dependent siderophore receptor
228	 41.38	0	279605..281008	+	467	197284143	-	PMI0234	-	decarboxylase
229	 44.15	0	281020..282036	+	338	197284144	-	PMI0235	-	pyridoxal-phosphate dependent enzyme
230	 43.35	0	282033..283190	+	385	197284145	-	PMI0236	-	octopine/opine/tauropine dehydrogenase
231	 44.39	0	283192..284403	+	403	197284146	-	PMI0237	-	MFS-family transporter
232	 42.64	0	284414..285541	+	375	197284147	-	PMI0238	-	substrate-binding protein
233	 39.37	0	285544..285990	+	148	197284148	-	PMI0239	-	hypothetical protein
234	 42.61	0	286327..288321	+	664	197284149	tktA	PMI0240	-	transketolase
235	 40.49	0	288580..289599	+	339	197284150	epd	PMI0241	-	D-erythrose 4-phosphate dehydrogenase
236	 41.84	0	289702..290865	+	387	197284151	pgk	PMI0242	-	phosphoglycerate kinase
237	 39.17	0	290930..292009	+	359	197284152	fbaA	PMI0243	-	fructose-bisphosphate aldolase class II
238	 33.33	-1	292101..292313	-	70	197284153	-	PMI0244	-	hypothetical protein
239	 39.01	0	292575..294053	-	492	197284154	-	PMI0245	-	MFS-family transporter
240	 41.04	0	294677..295195	-	172	197284155	hpaC	PMI0246	-	4-hydroxyphenylacetate 3-monooxygenase, reductase component
241	 37.56	0	295282..295494	+	70	197284156	-	PMI0247	-	hypothetical protein
242	 37.44	0	295772..296209	+	145	197284157	hpcR	PMI0248	-	homoprotocatechuate degradative operon repressor (MarR family transcriptional regulator)
243	 41.52	0	296280..298283	-	667	197284158	betU	PMI0249	-	secondary glycine betaine transporter
244	 37.24	0	298652..299317	-	221	197284159	-	PMI0250	-	lipoprotein
245	 32.89	-1	299567..300241	+	224	197284160	-	PMI0251	-	hypothetical protein
246	 39.98	0	300324..301241	-	305	197284161	rnz	PMI0252	-	ribonuclease Z
247	 17.09	-2	301428..301544	+	38	197284162	-	PMI0253	-	hypothetical protein
248	 39.39	0	302482..303009	+	175	197284163	-	PMI0254	-	fimbrial protein
249	 39.73	0	303249..305876	+	875	197284164	-	PMI0255	-	fimbrial outer membrane usher protein
250	 38.38	0	306695..307249	+	184	197284165	-	PMI0257	-	fimbrial protein
251	 37.38	0	307263..307781	+	172	197284166	-	PMI0258	-	minor fimbrial subunit
252	 37.80	0	307792..308328	+	178	197284167	-	PMI0259	-	fimbrial protein
253	 39.58	0	308347..309195	+	282	197284168	-	PMI0260	-	fimbrial adhesin
254	 39.25	0	309216..309536	+	106	197284169	-	PMI0261	-	fimbrial operon regulator
255	 36.86	0	310101..310667	-	188	197284170	mrpI	PMI0262	-	fimbriae recombinase
256	 38.64	0	311346..311873	+	175	197284171	mrpA	PMI0263	-	major mannose-resistant/Proteus-like fimbrial protein
257	 45.45	+1	311959..312519	+	186	197284172	mrpB	PMI0264	-	fimbrial subunit
258	 41.13	0	312542..315157	+	871	197284173	mrpC	PMI0265	-	fimbrial outer membrane usher protein
259	 40.05	0	315213..315971	+	252	197284174	mrpD	PMI0266	-	fimbrial chaperone protein
260	 41.21	0	315985..316530	+	181	197284175	mrpE	PMI0267	-	fimbrial subunit
261	 38.07	0	316543..317028	+	161	197284176	mrpF	PMI0268	-	fimbrial subunit
262	 39.53	0	317039..317587	+	182	197284177	mrpG	PMI0269	-	fimbrial subunit
263	 41.79	0	317609..318436	+	275	197284178	mrpH	PMI0270	-	fimbrial adhesin
264	 33.64	-1	318461..318781	+	106	197284179	mrpJ	PMI0271	-	fimbrial operon regulator
265	 39.43	0	319405..320979	+	524	197284180	mtrF	PMI0272	-	efflux pump component
266	 37.50	0	321019..321402	-	127	197284181	-	PMI0273	-	hypothetical protein
267	 42.48	0	321534..321872	+	112	197284182	-	PMI0274	-	hypothetical protein
268	 35.58	0	322226..323872	+	548	197284183	arnT	PMI0275	-	undecaprenyl phosphate-alpha-4-amino-4-deoxy-l-arabinose arabinosyl transferase
269	 33.63	-1	324361..325713	-	450	197284184	zapD	PMI0276	-	type I secretion outer membrane protein
270	 32.96	-1	325713..327038	-	441	197284185	zapC	PMI0277	-	type I secretion protein
271	 34.89	0	327055..328794	-	579	197284186	zapB	PMI0278	-	Type I secretion ATP-binding protein
272	 34.55	-1	328957..330432	-	491	197284187	zapA	PMI0279	-	metalloprotease
273	 29.12	-2	331042..333105	-	687	197284188	zapE	PMI0281	-	metalloprotease
274	 30.74	-1	333336..335300	-	654	197284189	-	PMI0282	-	metalloprotease
275	 32.11	-1	335607..337571	-	654	197284190	-	PMI0283	-	metalloprotease
276	 22.54	-2	337728..338144	+	138	197284191	-	PMI0284	-	hypothetical protein
277	 33.08	-1	338218..340167	-	649	197284192	-	PMI0285	-	metalloprotease
278	 34.01	-1	340636..341520	+	294	197284193	-	PMI0286	-	transcriptional regulator
279	 39.70	0	341514..342770	-	418	197284194	-	PMI0287	-	amidohydrolase/metallopeptidase
280	 33.55	-1	343139..344524	-	461	197284195	rafY	PMI0288	-	glycoporin
281	 32.87	-1	344579..345223	-	214	197284196	pgmB	PMI0289	-	beta-phosphoglucomutase
282	 36.31	0	345216..347933	-	905	197284197	-	PMI0290	-	glycosyl hydrolase
283	 37.13	0	347959..349380	-	473	197284198	treB	PMI0291	-	trehalose-specific PTS system, EIIBC component
284	 29.17	-2	349391..349486	-	31	197284199	-	PMI0292	-	hypothetical protein
285	 34.98	0	349499..350467	-	322	197284200	treR	PMI0293	-	trehalose operon repressor (LacI-family transcriptional regulator)
286	 27.15	-2	350630..351082	-	150	197284201	-	PMI0294	-	hypothetical protein
287	 21.21	-2	351079..351903	-	274	197284202	-	PMI0295	-	hypothetical protein
288	 28.07	-2	352544..352828	+	94	197284203	-	PMI0296	-	fimbrial operon regulator
289	 32.44	-1	352973..353533	+	186	197284204	-	PMI0297	-	fimbrial subunit
290	 36.41	0	353710..354294	+	194	197284205	-	PMI0298	-	fimbrial subunit
291	 36.77	0	354349..356877	+	842	197284206	-	PMI0299	-	fimbrial outer membrane usher protein
292	 33.73	-1	356889..357644	+	251	197284207	-	PMI0300	-	fimbrial chaperone protein
293	 32.17	-1	357676..358104	+	142	197284208	-	PMI0301	-	fimbrial protein
294	 32.40	-1	358097..358630	+	177	197284209	-	PMI0302	-	fimbrial subunit
295	 29.05	-2	358630..359166	+	178	197284210	-	PMI0303	-	fimbrial subunit
296	 32.47	-1	359179..360330	+	383	197284211	-	PMI0304	-	fimbrial adhesin
297	 30.59	-1	360449..361141	-	230	197284212	-	PMI0305	-	TetR-family transcriptional regulator
298	 41.23	0	361271..362599	-	442	197284213	potE	PMI0306	-	putrescine-ornithine antiporter
299	 39.39	0	362663..364825	-	720	197284214	speF	PMI0307	-	ornithine decarboxylase, inducible
300	 30.22	-1	366482..367252	-	256	197284215	-	PMI0308	-	hypothetical protein
301	 37.07	0	368261..368581	-	106	197284216	-	PMI0311	-	hypothetical protein
302	 23.93	-2	369084..369944	-	286	197284217	-	PMI0312	-	hypothetical protein
303	 23.75	-2	370951..371931	-	326	197284218	-	PMI0316	-	hypothetical protein
304	 37.84	0	372184..372738	+	184	197284219	-	PMI0317	-	lipoprotein
305	 37.02	0	372735..373439	+	234	197284220	-	PMI0318	-	hypothetical protein
306	 35.27	0	373458..373715	+	85	197284221	-	PMI0319	-	hypothetical protein
307	 35.06	0	373758..374336	+	192	197284222	-	PMI0320	-	hypothetical protein
308	 35.56	0	374340..374609	+	89	197284223	-	PMI0321	-	hypothetical protein
309	 39.19	0	374836..375108	+	90	197284224	-	PMI0322	-	transposase
310	 41.83	0	376247..377317	-	356	197284225	mltC	PMI0324	-	membrane-bound lytic murein transglycosylase
311	 35.90	0	377380..377652	-	90	197284226	yggX	PMI0325	-	probable Fe(2+) trafficking protein
312	 41.31	0	377683..378723	-	346	197284227	mutY	PMI0326	-	A/G-specific adenine glycosylase
313	 41.81	0	378939..379658	+	239	197284228	trmB	PMI0327	-	tRNA (guanine-N(7)-)-methyltransferase
314	 39.45	0	379658..379984	+	108	197284229	-	PMI0328	-	hypothetical protein
315	 40.45	0	380061..380987	+	308	197284230	glsA	PMI0329	-	glutaminase
316	 38.75	0	381059..381796	+	245	197284231	-	PMI0330	-	hypothetical protein
317	 37.75	0	381944..382894	+	316	197284232	-	PMI0331	-	ABC transporter, substrate-binding protein
39.69	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.