IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2588	 42.37	0	2925131..2926126	-	331	197286503	gntR	PMI2674	-	gluconate utilization system Gnt-I transcriptional repressor (LacI-family transcriptional regulator)
2589	 42.15	0	2926361..2927392	+	343	197286504	-	PMI2675	-	iron compound ABC transporter, substrate-binding protein
2590	 42.84	0	2927389..2928387	+	332	197286505	-	PMI2676	-	iron compound ABC transporter, permease
2591	 40.50	0	2928384..2929178	+	264	197286506	-	PMI2677	-	iron compound ABC transporter, ATP-binding protein
2592	 40.48	0	2929165..2929989	+	274	197286507	-	PMI2678	-	hypothetical protein
2593	 41.70	0	2929986..2930834	+	282	197286508	modD	PMI2679	-	pyrophosphorylase
2594	 39.49	0	2930965..2932914	+	649	197286509	prrA	PMI2680	-	TonB-dependent receptor
2595	 28.37	-2	2933022..2934068	-	348	197286510	-	PMI2681	-	cell invasion protein
2596	 31.89	-1	2934129..2934959	-	276	197286511	-	PMI2682	-	type III secretion system protein
2597	 29.77	-2	2934984..2937143	-	719	197286512	-	PMI2683	-	cell invasion protein
2598	 30.25	-1	2937148..2937666	-	172	197286513	-	PMI2684	-	chaperone protein
2599	 29.85	-2	2937788..2938849	-	353	197286514	-	PMI2685	-	type III secretion system protein
2600	 31.27	-1	2938842..2939615	-	257	197286515	-	PMI2686	-	type III secretion system protein
2601	 38.43	0	2939621..2939875	-	84	197286516	-	PMI2687	-	type III secretion system protein
2602	 32.58	-1	2939875..2940534	-	219	197286517	-	PMI2688	-	type III secretion system protein
2603	 27.20	-2	2940538..2941467	-	309	197286518	-	PMI2689	-	type III secretion system protein
2604	 29.33	-2	2941464..2942612	-	382	197286519	-	PMI2690	-	type III secretion system protein
2605	 31.17	-1	2942623..2943084	-	153	197286520	-	PMI2691	-	type III secretion system protein
2606	 36.57	0	2943068..2944366	-	432	197286521	-	PMI2692	-	type III secretion system protein
2607	 34.54	-1	2944370..2944783	-	137	197286522	-	PMI2693	-	type III secretion system protein
2608	 31.19	-1	2944792..2946891	-	699	197286523	-	PMI2694	-	type III secretion system protein
2609	 28.69	-2	2946918..2947994	-	358	197286524	-	PMI2695	-	type III secretion system protein
2610	 34.50	-1	2947999..2949714	-	571	197286525	-	PMI2696	-	type III secretion system protein
2611	 29.76	-2	2949698..2950453	-	251	197286526	-	PMI2697	-	type III secretion system regulatory protein
2612	 23.46	-2	2950743..2951816	+	357	197286527	-	PMI2698	-	hypothetical protein
2613	 35.29	0	2951866..2952120	+	84	197286528	-	PMI2699	-	type III secretion system protein
2614	 32.26	-1	2952144..2952422	+	92	197286529	-	PMI2700	-	type III secretion system protein
2615	 31.87	-1	2952425..2953177	+	250	197286530	-	PMI2701	-	type III secretion system protein
2616	 30.54	-1	2953170..2953742	+	190	197286531	-	PMI2702	-	type III secretion system protein (oxygen-regulated invasion protein)
2617	 34.34	-1	2953723..2954415	+	230	197286532	-	PMI2703	-	type III secretion system protein (oxygen-regulated invasion protein)
2618	 33.80	-1	2954405..2954836	+	143	197286533	-	PMI2704	-	hypothetical protein
2619	 40.44	0	2954837..2955286	-	149	197286534	soxR	PMI2705	-	redox-sensitive transcriptional activator
2620	 39.72	0	2955412..2955834	+	140	197286535	-	PMI2706	-	hypothetical protein
2621	 42.82	0	2955880..2956986	+	368	197286536	-	PMI2707	-	multidrug efflux protein
2622	 41.81	0	2956999..2960076	+	1025	197286537	-	PMI2708	-	multidrug efflux protein
2623	 27.23	-2	2960157..2961287	-	376	197286538	-	PMI2709	-	protein-tyrosine phosphatase
2624	 39.76	0	2961494..2961820	-	108	197286539	-	PMI2710	-	multidrug resistance protein
2625	 37.99	0	2961911..2962318	-	135	197286540	-	PMI2711	-	quaternary ammonium compound resistance protein
2626	 32.34	-1	2962353..2963057	-	234	197286541	-	PMI2712	-	hypothetical protein
2627	 41.55	0	2963075..2963719	-	214	197286542	pduL	PMI2713	-	propanediol utilization protein
2628	 41.81	0	2963719..2964225	-	168	197286543	pduJ	PMI2714	-	propanediol utilization protein
2629	 41.96	0	2964242..2965192	-	316	197286544	-	PMI2715	-	propanediol utilization protein (dehydratase activating enzyme)
2630	 42.58	0	2965296..2968724	-	1142	197286545	-	PMI2716	-	propanediol utilization protein (dehydratase)
2631	 43.86	0	2968776..2969924	-	382	197286546	-	PMI2717	-	propanediol utilization protein (alcohol dehydrogenase)
2632	 42.80	0	2969932..2970195	-	87	197286547	-	PMI2718	-	hypothetical protein
2633	 43.86	0	2970222..2971874	-	550	197286548	-	PMI2719	-	aldehyde-alcohol dehydrogenase
2634	 46.95	+1	2971942..2972220	-	92	197286549	-	PMI2720	-	microcompartments protein
2635	 45.26	+1	2972235..2972519	-	94	197286550	-	PMI2721	-	microcompartments protein
2636	 47.31	+1	2972540..2972818	-	92	197286551	-	PMI2722	-	microcompartments protein
2637	 37.57	0	2973402..2973920	-	172	197286552	-	PMI2723	-	hypothetical protein
2638	 35.31	0	2973920..2974780	-	286	197286553	-	PMI2724	-	regulatory protein
2639	 41.08	0	2974801..2975394	-	197	197286554	-	PMI2725	-	TetR-family transcriptional regulator
2640	 43.29	0	2975825..2977099	-	424	197286555	cysD	PMI2726	-	O-acetylhomoserine sulfhydrylase
2641	 41.24	0	2977288..2978223	-	311	197286556	-	PMI2727	-	hypothetical protein
2642	 37.79	0	2979093..2979653	+	186	197286557	atfA	PMI2728	-	major subunit of type 1 fimbria
2643	 31.12	-1	2979752..2980429	+	225	197286558	atfB	PMI2729	-	type 1 fimbrial chaperone protein
2644	 38.74	0	2980466..2982997	+	843	197286559	atfC	PMI2730	-	outer membrane usher protein
2645	 41.04	0	2982997..2983515	+	172	197286560	-	PMI2731	-	fimbrial subunit
2646	 40.60	0	2983515..2984588	+	357	197286561	-	PMI2732	-	fimbrial adhesin
2647	 33.02	-1	2984615..2984932	+	105	197286562	-	PMI2733	-	fimbrial operon regulator
2648	 38.70	0	2985066..2986109	-	347	197286563	potD	PMI2734	-	spermidine/putrescine ABC transporter, substrate-binding periplasmic protein
2649	 41.15	0	2986226..2987005	-	259	197286564	potC	PMI2735	-	spermidine/putrescine ABC transporter, permease protein
2650	 37.51	0	2987002..2987862	-	286	197286565	potB	PMI2736	-	spermidine/putrescine ABC transporter, permease protein
2651	 43.55	0	2987846..2988961	-	371	197286566	potA	PMI2737	-	spermidine/putrescine ABC transporter, ATP-binding protein
2652	 35.13	0	2989405..2990742	-	445	197286567	-	PMI2738	-	serine protease
2653	 42.03	0	2991572..2992606	+	344	197286568	dusA	PMI2739	-	tRNA-dihydrouridine synthase A
2654	 43.50	0	2992713..2993696	-	327	197286569	qor	PMI2740	-	quinone oxidoreductase
2655	 43.83	0	2993864..2995273	+	469	197286570	dnaB	PMI2741	-	replicative DNA helicase
2656	 43.32	0	2995314..2996405	+	363	197286571	alr	PMI2742	-	alanine racemase (biosynthetic)
2657	 42.55	0	2996461..2997654	+	397	197286572	tyrB	PMI2743	-	aromatic-amino-acid aminotransferase
2658	 45.11	+1	2997776..2999125	-	449	197286573	-	PMI2744	-	hypothetical protein
2659	 41.22	0	2999187..3000518	-	443	197286574	-	PMI2745	-	hypothetical protein
2660	 43.84	0	3001171..3004005	-	944	197286575	uvrA	PMI2746	-	UvrABC excision repair system proteinA (excinuclease ABC subunit A)
2661	 47.81	+1	3004258..3004782	+	174	197286576	ssb	PMI2747	-	single-strand binding protein
2662	 41.62	0	3005138..3005668	+	176	197286577	zur	PMI2748	-	zinc uptake regulation protein
2663	 43.46	0	3005857..3006468	-	203	197286578	lexA	PMI2749	-	LexA repressor
2664	 40.32	0	3006596..3006967	-	123	197286579	dgkA	PMI2750	-	diacylglycerol kinase
2665	 41.75	0	3007098..3009581	+	827	197286580	plsB	PMI2751	-	glycerol-3-phosphate acyltransferase
2666	 37.66	0	3009695..3010549	-	284	197286581	ubiA	PMI2752	-	4-hydroxybenzoate octaprenyltransferase
2667	 40.39	0	3010578..3011087	-	169	197286582	ubiC	PMI2753	-	chorismate--pyruvate lyase
2668	 39.47	0	3011309..3012955	-	548	197286583	pgi	PMI2754	-	glucose-6-phosphate isomerase
2669	 41.21	0	3013220..3014590	+	456	197286584	lysC	PMI2755	-	lysine-sensitive aspartokinase III
2670	 22.08	-2	3014817..3015500	+	227	197286585	-	PMI2756	-	hypothetical protein
2671	 35.73	0	3015585..3016169	-	194	197286586	-	PMI2757	-	hypothetical protein
2672	 42.73	0	3016297..3019968	-	1223	197286587	metH	PMI2758	-	methionine synthase (5-methyltetrahydrofolate--homocysteine methyltransferase)
2673	 42.29	0	3020232..3021068	+	278	197286588	iclR	PMI2759	-	acetate operon repressor
2674	 42.49	0	3021374..3023230	+	618	197286589	edd	PMI2760	-	6-phosphogluconate dehydratase
2675	 43.93	0	3023309..3023950	+	213	197286590	eda	PMI2761	-	KHG/KDPG aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase and 2-dehydro-3-deoxy-phosphogluconate aldolase]
2676	 37.81	0	3024023..3025741	-	572	197286591	aceK	PMI2762	-	isocitrate dehydrogenase kinase/phosphatase
2677	 43.50	0	3025813..3027120	-	435	197286592	aceA	PMI2763	-	isocitrate lyase
2678	 39.80	0	3027196..3028788	-	530	197286593	aceB	PMI2764	-	malate synthase A
2679	 36.24	0	3029131..3030060	+	309	197286594	metA	PMI2765	-	homoserine O-succinyltransferase
2680	 37.50	0	3030118..3031221	-	367	197286595	-	PMI2766	-	glycerol dehydrogenase
2681	 37.73	0	3031581..3032126	+	181	197286596	-	PMI2767	-	isopentenyl-diphosphate delta-isomerase
2682	 41.32	0	3038234..3039823	+	529	197286597	purH	PMI2768	-	bifunctional purine biosynthesis protein [includes: phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclohydrolase]
2683	 44.34	0	3039836..3041125	+	429	197286598	purD	PMI2769	-	phosphoribosylamine--glycine ligase
2684	 42.14	0	3041149..3041841	-	230	197286599	-	PMI2770	-	lipoprotein
2685	 42.12	0	3041856..3042128	-	90	197286600	hupA	PMI2771	-	DNA-binding protein HU-alpha (HU-2)
2686	 39.26	0	3042319..3042909	-	196	197286601	-	PMI2772	-	hypothetical protein
2687	 40.51	0	3042984..3043652	-	222	197286602	nfi	PMI2773	-	endonuclease V
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.