IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2543	 44.66	+1	2873014..2873481	-	155	197286458	-	PMI2628	-	hypothetical protein
2544	 43.96	0	2873465..2873671	-	68	197286459	-	PMI2629	-	hypothetical protein
2545	 51.73	+2	2874365..2876419	-	684	197286460	-	PMI2630	-	topoisomerase
2546	 47.49	+1	2876429..2876965	-	178	197286461	-	PMI2631	-	lipoprotein
2547	 42.70	0	2877013..2877717	-	234	197286462	-	PMI2632	-	hypothetical protein
2548	 36.99	0	2878000..2878518	+	172	197286463	-	PMI2633	-	hypothetical protein
2549	 41.98	0	2878555..2878716	+	53	197286464	-	PMI2634	-	hypothetical protein
2550	 49.54	+2	2878804..2880099	-	431	197286465	-	PMI2635	-	hypothetical protein
2551	 45.96	+1	2880226..2880510	-	94	197286466	-	PMI2636	-	hypothetical protein
2552	 50.25	+2	2880500..2881090	-	196	197286467	-	PMI2637	-	hypothetical protein
2553	 50.10	+2	2881005..2881517	-	170	197286468	-	PMI2638	-	hypothetical protein
2554	 49.33	+1	2881615..2883264	-	549	197286469	-	PMI2639	-	hypothetical protein
2555	 52.25	+2	2883279..2884631	-	450	197286470	-	PMI2640	-	DNA helicase
2556	 46.58	+1	2884624..2885355	-	243	197286471	-	PMI2641	-	hypothetical protein
2557	 46.62	+1	2885352..2886224	-	290	197286472	-	PMI2642	-	chromosome partitioning related protein
2558	 35.37	0	2886711..2887889	-	392	197286473	-	PMI2644	-	hypothetical protein
2559	 34.67	-1	2887886..2888482	-	198	197286474	-	PMI2645	-	hypothetical protein
2560	 36.98	0	2888961..2889590	+	209	197286475	-	PMI2646	-	hypothetical protein
2561	 41.07	0	2889677..2891872	+	731	197286476	-	PMI2647	-	hypothetical protein
2562	 39.84	0	2891965..2896899	+	1644	197286477	-	PMI2648	-	hypothetical protein
2563	 43.17	0	2897135..2898466	-	443	197286478	-	PMI2649	-	MFS-family transporter
2564	 40.97	0	2898550..2898837	-	95	197286479	fixX	PMI2650	-	ferredoxin subunit for carnitine metabolism
2565	 44.55	0	2898834..2900126	-	430	197286480	fixC	PMI2651	-	FAD-dependent oxidoreductase subunit for carnitine metabolism
2566	 41.96	0	2900182..2901120	-	312	197286481	fixB	PMI2652	-	electron transfer flavoprotein alpha subunit for carnitine metabolism
2567	 42.51	0	2901132..2901905	-	257	197286482	fixA	PMI2653	-	electron transfer flavoprotein beta subunit for carnitine metabolism
2568	 43.11	0	2902504..2904048	+	514	197286483	caiT	PMI2654	-	L-carnitine/gamma-butyrobetaine antiporter
2569	 45.41	+1	2904061..2905203	+	380	197286484	caiA	PMI2655	-	crotonobetainyl-CoA dehydrogenase
2570	 43.90	0	2905273..2906493	+	406	197286485	caiB	PMI2656	-	crotonobetainyl-coa:carnitine CoA-transferase
2571	 41.62	0	2906571..2908127	+	518	197286486	caiC	PMI2657	-	probable crotonobetaine/carnitine-CoA ligase
2572	 46.06	+1	2908193..2908978	+	261	197286487	caiD	PMI2658	-	carnitinyl-CoA dehydratase
2573	 42.42	0	2909018..2909611	+	197	197286488	caiE	PMI2659	-	transferase in carnitine metabolism
2574	 40.46	0	2909675..2910067	-	130	197286489	caiF	PMI2660	-	transcriptional activator for carnitine metabolism
2575	 41.78	0	2910786..2911448	-	220	197286490	fsaA	PMI2661	-	fructose-6-phosphate aldolase
2576	 37.25	0	2911710..2912321	-	203	197286491	-	PMI2662	-	chitin binding protein
2577	 38.96	0	2912650..2913111	-	153	197286492	-	PMI2663	-	regulatory protein
2578	 37.68	0	2913469..2914458	+	329	197286493	-	PMI2664	-	hypothetical protein
2579	 42.69	0	2914458..2915600	+	380	197286494	-	PMI2665	-	hypothetical protein
2580	 42.53	0	2915600..2916751	+	383	197286495	-	PMI2666	-	lipoprotein
2581	 43.52	0	2917027..2917821	+	264	197286496	-	PMI2667	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
2582	 39.75	0	2917986..2919404	+	472	197286497	pacA	PMI2668	-	peptidoglycan O-acyl transferase
2583	 40.54	0	2919391..2920584	+	397	197286498	pacB	PMI2669	-	peptidoglycan O-acyl transferase
2584	 41.85	0	2920559..2921791	+	410	197286499	-	PMI2670	-	lipoprotein
2585	 33.33	-1	2921858..2922784	-	308	197286500	-	PMI2671	-	methyl-accepting chemotaxis protein
2586	 44.92	+1	2922936..2924273	-	445	197286501	gntU	PMI2672	-	low-affinity gluconate transporter
2587	 38.38	0	2924270..2924824	-	184	197286502	gntK	PMI2673	-	thermoresistant gluconokinase
2588	 42.37	0	2925131..2926126	-	331	197286503	gntR	PMI2674	-	gluconate utilization system Gnt-I transcriptional repressor (LacI-family transcriptional regulator)
2589	 42.15	0	2926361..2927392	+	343	197286504	-	PMI2675	-	iron compound ABC transporter, substrate-binding protein
2590	 42.84	0	2927389..2928387	+	332	197286505	-	PMI2676	-	iron compound ABC transporter, permease
2591	 40.50	0	2928384..2929178	+	264	197286506	-	PMI2677	-	iron compound ABC transporter, ATP-binding protein
2592	 40.48	0	2929165..2929989	+	274	197286507	-	PMI2678	-	hypothetical protein
2593	 41.70	0	2929986..2930834	+	282	197286508	modD	PMI2679	-	pyrophosphorylase
2594	 39.49	0	2930965..2932914	+	649	197286509	prrA	PMI2680	-	TonB-dependent receptor
2595	 28.37	-2	2933022..2934068	-	348	197286510	-	PMI2681	-	cell invasion protein
2596	 31.89	-1	2934129..2934959	-	276	197286511	-	PMI2682	-	type III secretion system protein
2597	 29.77	-2	2934984..2937143	-	719	197286512	-	PMI2683	-	cell invasion protein
2598	 30.25	-1	2937148..2937666	-	172	197286513	-	PMI2684	-	chaperone protein
2599	 29.85	-2	2937788..2938849	-	353	197286514	-	PMI2685	-	type III secretion system protein
2600	 31.27	-1	2938842..2939615	-	257	197286515	-	PMI2686	-	type III secretion system protein
2601	 38.43	0	2939621..2939875	-	84	197286516	-	PMI2687	-	type III secretion system protein
2602	 32.58	-1	2939875..2940534	-	219	197286517	-	PMI2688	-	type III secretion system protein
2603	 27.20	-2	2940538..2941467	-	309	197286518	-	PMI2689	-	type III secretion system protein
2604	 29.33	-2	2941464..2942612	-	382	197286519	-	PMI2690	-	type III secretion system protein
2605	 31.17	-1	2942623..2943084	-	153	197286520	-	PMI2691	-	type III secretion system protein
2606	 36.57	0	2943068..2944366	-	432	197286521	-	PMI2692	-	type III secretion system protein
2607	 34.54	-1	2944370..2944783	-	137	197286522	-	PMI2693	-	type III secretion system protein
2608	 31.19	-1	2944792..2946891	-	699	197286523	-	PMI2694	-	type III secretion system protein
2609	 28.69	-2	2946918..2947994	-	358	197286524	-	PMI2695	-	type III secretion system protein
2610	 34.50	-1	2947999..2949714	-	571	197286525	-	PMI2696	-	type III secretion system protein
2611	 29.76	-2	2949698..2950453	-	251	197286526	-	PMI2697	-	type III secretion system regulatory protein
2612	 23.46	-2	2950743..2951816	+	357	197286527	-	PMI2698	-	hypothetical protein
2613	 35.29	0	2951866..2952120	+	84	197286528	-	PMI2699	-	type III secretion system protein
2614	 32.26	-1	2952144..2952422	+	92	197286529	-	PMI2700	-	type III secretion system protein
2615	 31.87	-1	2952425..2953177	+	250	197286530	-	PMI2701	-	type III secretion system protein
2616	 30.54	-1	2953170..2953742	+	190	197286531	-	PMI2702	-	type III secretion system protein (oxygen-regulated invasion protein)
2617	 34.34	-1	2953723..2954415	+	230	197286532	-	PMI2703	-	type III secretion system protein (oxygen-regulated invasion protein)
2618	 33.80	-1	2954405..2954836	+	143	197286533	-	PMI2704	-	hypothetical protein
2619	 40.44	0	2954837..2955286	-	149	197286534	soxR	PMI2705	-	redox-sensitive transcriptional activator
2620	 39.72	0	2955412..2955834	+	140	197286535	-	PMI2706	-	hypothetical protein
2621	 42.82	0	2955880..2956986	+	368	197286536	-	PMI2707	-	multidrug efflux protein
2622	 41.81	0	2956999..2960076	+	1025	197286537	-	PMI2708	-	multidrug efflux protein
2623	 27.23	-2	2960157..2961287	-	376	197286538	-	PMI2709	-	protein-tyrosine phosphatase
2624	 39.76	0	2961494..2961820	-	108	197286539	-	PMI2710	-	multidrug resistance protein
2625	 37.99	0	2961911..2962318	-	135	197286540	-	PMI2711	-	quaternary ammonium compound resistance protein
2626	 32.34	-1	2962353..2963057	-	234	197286541	-	PMI2712	-	hypothetical protein
2627	 41.55	0	2963075..2963719	-	214	197286542	pduL	PMI2713	-	propanediol utilization protein
2628	 41.81	0	2963719..2964225	-	168	197286543	pduJ	PMI2714	-	propanediol utilization protein
2629	 41.96	0	2964242..2965192	-	316	197286544	-	PMI2715	-	propanediol utilization protein (dehydratase activating enzyme)
2630	 42.58	0	2965296..2968724	-	1142	197286545	-	PMI2716	-	propanediol utilization protein (dehydratase)
2631	 43.86	0	2968776..2969924	-	382	197286546	-	PMI2717	-	propanediol utilization protein (alcohol dehydrogenase)
2632	 42.80	0	2969932..2970195	-	87	197286547	-	PMI2718	-	hypothetical protein
2633	 43.86	0	2970222..2971874	-	550	197286548	-	PMI2719	-	aldehyde-alcohol dehydrogenase
2634	 46.95	+1	2971942..2972220	-	92	197286549	-	PMI2720	-	microcompartments protein
2635	 45.26	+1	2972235..2972519	-	94	197286550	-	PMI2721	-	microcompartments protein
2636	 47.31	+1	2972540..2972818	-	92	197286551	-	PMI2722	-	microcompartments protein
2637	 37.57	0	2973402..2973920	-	172	197286552	-	PMI2723	-	hypothetical protein
2638	 35.31	0	2973920..2974780	-	286	197286553	-	PMI2724	-	regulatory protein
2639	 41.08	0	2974801..2975394	-	197	197286554	-	PMI2725	-	TetR-family transcriptional regulator
2640	 43.29	0	2975825..2977099	-	424	197286555	cysD	PMI2726	-	O-acetylhomoserine sulfhydrylase
2641	 41.24	0	2977288..2978223	-	311	197286556	-	PMI2727	-	hypothetical protein
2642	 37.79	0	2979093..2979653	+	186	197286557	atfA	PMI2728	-	major subunit of type 1 fimbria
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.