IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2514	 56.59	+2	2821091..2821507	-	138	197286429	-	PMI2582	-	hypothetical protein
2515	 50.00	+2	2821520..2821933	-	137	197286430	-	PMI2583	-	hypothetical protein
2516	 54.58	+2	2821930..2822169	-	79	197286431	-	PMI2584	-	hypothetical protein
2517	 56.57	+2	2822166..2822492	-	108	197286432	-	PMI2585	-	hypothetical protein
2518	 52.22	+2	2822639..2823247	+	202	197286433	-	PMI2586	-	hypothetical protein
2519	 54.53	+2	2823335..2824084	-	249	197286434	-	PMI2587	-	hypothetical protein
2520	 54.70	+2	2824071..2826218	-	715	197286435	-	PMI2588	-	plasmid transfer protein
2521	 54.04	+2	2826377..2826574	-	65	197286436	-	PMI2589	-	subunit of ATP synthase
2522	 57.66	+2	2826574..2827128	-	184	197286437	-	PMI2590	-	hypothetical protein
2523	 58.06	+2	2827118..2827756	-	212	197286438	-	PMI2591	-	lytic transglycosylase
2524	 56.64	+2	2827769..2828506	-	245	197286439	-	PMI2592	-	hypothetical protein
2525	 56.28	+2	2828517..2829257	-	246	197286440	-	PMI2593	-	hypothetical protein
2526	 56.11	+2	2829254..2829916	-	220	197286441	-	PMI2594	-	conjugal transfer protein
2527	 36.25	0	2830683..2832671	-	662	197286442	-	PMI2596	-	siderophore TonB-dependent receptor
2528	 30.98	-1	2832928..2834157	+	409	197286443	-	PMI2597	-	MFS-family transporter
2529	 32.38	-1	2834189..2834926	+	245	197286444	-	PMI2598	-	hypothetical protein
2530	 34.76	-1	2834947..2841051	+	2034	197286445	-	PMI2599	-	non-ribosomal peptide synthase (siderophore synthase)
2531	 38.52	0	2841064..2850279	+	3071	197286446	nrpS	PMI2600	-	non-ribosomal peptide synthase (siderophore synthase)
2532	 38.29	0	2850279..2851367	+	362	197286447	nrpU	PMI2601	-	siderophore biosynthetic protein
2533	 34.24	-1	2851367..2852140	+	257	197286448	nrpT	PMI2602	-	siderophore biosynthetic protein (thioesterase)
2534	 32.65	-1	2852159..2853925	+	588	197286449	nrpA	PMI2603	-	siderophore ABC transporter, ATP-binding/permease protein
2535	 32.70	-1	2853918..2855645	+	575	197286450	nrpB	PMI2604	-	siderophore ABC transporter, ATP-binding/permease protein
2536	 26.80	-2	2855658..2856407	+	249	197286451	nrpG	PMI2605	-	4'-phosphopantetheinyl transferase
2537	 44.44	0	2857629..2857817	+	62	197286452	-	PMI2608	-	prophage regulatory protein
2538	 44.22	0	2857976..2858278	+	100	197286453	insN	PMI2610	-	transposase for insertion sequence element IS911
2539	 49.77	+2	2859139..2860203	+	354	197286454	-	PMI2612	-	transposase
2540	 33.88	-1	2862321..2864690	-	789	197286455	-	PMI2618	-	TonB-dependent receptor
2541	 35.86	0	2864701..2866794	-	697	197286456	-	PMI2619	-	TonB-dependent receptor
2542	 47.73	+1	2872070..2872993	-	307	197286457	-	PMI2627	-	transposase
2543	 44.66	+1	2873014..2873481	-	155	197286458	-	PMI2628	-	hypothetical protein
2544	 43.96	0	2873465..2873671	-	68	197286459	-	PMI2629	-	hypothetical protein
2545	 51.73	+2	2874365..2876419	-	684	197286460	-	PMI2630	-	topoisomerase
2546	 47.49	+1	2876429..2876965	-	178	197286461	-	PMI2631	-	lipoprotein
2547	 42.70	0	2877013..2877717	-	234	197286462	-	PMI2632	-	hypothetical protein
2548	 36.99	0	2878000..2878518	+	172	197286463	-	PMI2633	-	hypothetical protein
2549	 41.98	0	2878555..2878716	+	53	197286464	-	PMI2634	-	hypothetical protein
2550	 49.54	+2	2878804..2880099	-	431	197286465	-	PMI2635	-	hypothetical protein
2551	 45.96	+1	2880226..2880510	-	94	197286466	-	PMI2636	-	hypothetical protein
2552	 50.25	+2	2880500..2881090	-	196	197286467	-	PMI2637	-	hypothetical protein
2553	 50.10	+2	2881005..2881517	-	170	197286468	-	PMI2638	-	hypothetical protein
2554	 49.33	+1	2881615..2883264	-	549	197286469	-	PMI2639	-	hypothetical protein
2555	 52.25	+2	2883279..2884631	-	450	197286470	-	PMI2640	-	DNA helicase
2556	 46.58	+1	2884624..2885355	-	243	197286471	-	PMI2641	-	hypothetical protein
2557	 46.62	+1	2885352..2886224	-	290	197286472	-	PMI2642	-	chromosome partitioning related protein
2558	 35.37	0	2886711..2887889	-	392	197286473	-	PMI2644	-	hypothetical protein
2559	 34.67	-1	2887886..2888482	-	198	197286474	-	PMI2645	-	hypothetical protein
2560	 36.98	0	2888961..2889590	+	209	197286475	-	PMI2646	-	hypothetical protein
2561	 41.07	0	2889677..2891872	+	731	197286476	-	PMI2647	-	hypothetical protein
2562	 39.84	0	2891965..2896899	+	1644	197286477	-	PMI2648	-	hypothetical protein
2563	 43.17	0	2897135..2898466	-	443	197286478	-	PMI2649	-	MFS-family transporter
2564	 40.97	0	2898550..2898837	-	95	197286479	fixX	PMI2650	-	ferredoxin subunit for carnitine metabolism
2565	 44.55	0	2898834..2900126	-	430	197286480	fixC	PMI2651	-	FAD-dependent oxidoreductase subunit for carnitine metabolism
2566	 41.96	0	2900182..2901120	-	312	197286481	fixB	PMI2652	-	electron transfer flavoprotein alpha subunit for carnitine metabolism
2567	 42.51	0	2901132..2901905	-	257	197286482	fixA	PMI2653	-	electron transfer flavoprotein beta subunit for carnitine metabolism
2568	 43.11	0	2902504..2904048	+	514	197286483	caiT	PMI2654	-	L-carnitine/gamma-butyrobetaine antiporter
2569	 45.41	+1	2904061..2905203	+	380	197286484	caiA	PMI2655	-	crotonobetainyl-CoA dehydrogenase
2570	 43.90	0	2905273..2906493	+	406	197286485	caiB	PMI2656	-	crotonobetainyl-coa:carnitine CoA-transferase
2571	 41.62	0	2906571..2908127	+	518	197286486	caiC	PMI2657	-	probable crotonobetaine/carnitine-CoA ligase
2572	 46.06	+1	2908193..2908978	+	261	197286487	caiD	PMI2658	-	carnitinyl-CoA dehydratase
2573	 42.42	0	2909018..2909611	+	197	197286488	caiE	PMI2659	-	transferase in carnitine metabolism
2574	 40.46	0	2909675..2910067	-	130	197286489	caiF	PMI2660	-	transcriptional activator for carnitine metabolism
2575	 41.78	0	2910786..2911448	-	220	197286490	fsaA	PMI2661	-	fructose-6-phosphate aldolase
2576	 37.25	0	2911710..2912321	-	203	197286491	-	PMI2662	-	chitin binding protein
2577	 38.96	0	2912650..2913111	-	153	197286492	-	PMI2663	-	regulatory protein
2578	 37.68	0	2913469..2914458	+	329	197286493	-	PMI2664	-	hypothetical protein
2579	 42.69	0	2914458..2915600	+	380	197286494	-	PMI2665	-	hypothetical protein
2580	 42.53	0	2915600..2916751	+	383	197286495	-	PMI2666	-	lipoprotein
2581	 43.52	0	2917027..2917821	+	264	197286496	-	PMI2667	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
2582	 39.75	0	2917986..2919404	+	472	197286497	pacA	PMI2668	-	peptidoglycan O-acyl transferase
2583	 40.54	0	2919391..2920584	+	397	197286498	pacB	PMI2669	-	peptidoglycan O-acyl transferase
2584	 41.85	0	2920559..2921791	+	410	197286499	-	PMI2670	-	lipoprotein
2585	 33.33	-1	2921858..2922784	-	308	197286500	-	PMI2671	-	methyl-accepting chemotaxis protein
2586	 44.92	+1	2922936..2924273	-	445	197286501	gntU	PMI2672	-	low-affinity gluconate transporter
2587	 38.38	0	2924270..2924824	-	184	197286502	gntK	PMI2673	-	thermoresistant gluconokinase
2588	 42.37	0	2925131..2926126	-	331	197286503	gntR	PMI2674	-	gluconate utilization system Gnt-I transcriptional repressor (LacI-family transcriptional regulator)
2589	 42.15	0	2926361..2927392	+	343	197286504	-	PMI2675	-	iron compound ABC transporter, substrate-binding protein
2590	 42.84	0	2927389..2928387	+	332	197286505	-	PMI2676	-	iron compound ABC transporter, permease
2591	 40.50	0	2928384..2929178	+	264	197286506	-	PMI2677	-	iron compound ABC transporter, ATP-binding protein
2592	 40.48	0	2929165..2929989	+	274	197286507	-	PMI2678	-	hypothetical protein
2593	 41.70	0	2929986..2930834	+	282	197286508	modD	PMI2679	-	pyrophosphorylase
2594	 39.49	0	2930965..2932914	+	649	197286509	prrA	PMI2680	-	TonB-dependent receptor
2595	 28.37	-2	2933022..2934068	-	348	197286510	-	PMI2681	-	cell invasion protein
2596	 31.89	-1	2934129..2934959	-	276	197286511	-	PMI2682	-	type III secretion system protein
2597	 29.77	-2	2934984..2937143	-	719	197286512	-	PMI2683	-	cell invasion protein
2598	 30.25	-1	2937148..2937666	-	172	197286513	-	PMI2684	-	chaperone protein
2599	 29.85	-2	2937788..2938849	-	353	197286514	-	PMI2685	-	type III secretion system protein
2600	 31.27	-1	2938842..2939615	-	257	197286515	-	PMI2686	-	type III secretion system protein
2601	 38.43	0	2939621..2939875	-	84	197286516	-	PMI2687	-	type III secretion system protein
2602	 32.58	-1	2939875..2940534	-	219	197286517	-	PMI2688	-	type III secretion system protein
2603	 27.20	-2	2940538..2941467	-	309	197286518	-	PMI2689	-	type III secretion system protein
2604	 29.33	-2	2941464..2942612	-	382	197286519	-	PMI2690	-	type III secretion system protein
2605	 31.17	-1	2942623..2943084	-	153	197286520	-	PMI2691	-	type III secretion system protein
2606	 36.57	0	2943068..2944366	-	432	197286521	-	PMI2692	-	type III secretion system protein
2607	 34.54	-1	2944370..2944783	-	137	197286522	-	PMI2693	-	type III secretion system protein
2608	 31.19	-1	2944792..2946891	-	699	197286523	-	PMI2694	-	type III secretion system protein
2609	 28.69	-2	2946918..2947994	-	358	197286524	-	PMI2695	-	type III secretion system protein
2610	 34.50	-1	2947999..2949714	-	571	197286525	-	PMI2696	-	type III secretion system protein
2611	 29.76	-2	2949698..2950453	-	251	197286526	-	PMI2697	-	type III secretion system regulatory protein
2612	 23.46	-2	2950743..2951816	+	357	197286527	-	PMI2698	-	hypothetical protein
2613	 35.29	0	2951866..2952120	+	84	197286528	-	PMI2699	-	type III secretion system protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.