IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.69   STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2485	 49.67	+2	2798409..2798708	-	99	197286400	-	PMI2553	-	hypothetical protein
2486	 57.03	+2	2798718..2799692	-	324	197286401	-	PMI2554	-	DNA primase
2487	 51.85	+2	2799845..2800492	-	215	197286402	-	PMI2555	-	hypothetical protein
2488	 47.95	+1	2800492..2801004	-	170	197286403	-	PMI2556	-	hypothetical protein
2489	 51.26	+2	2801115..2801471	-	118	197286404	-	PMI2557	-	hypothetical protein
2490	 52.01	+2	2801568..2801990	-	140	197286405	-	PMI2558	-	hypothetical protein
2491	 46.83	+1	2802157..2802534	-	125	197286406	-	PMI2559	-	hypothetical protein
2492	 49.28	+1	2802556..2802831	-	91	197286407	-	PMI2560	-	hypothetical protein
2493	 42.56	0	2802881..2803075	-	64	197286408	-	PMI2561	-	hypothetical protein
2494	 43.41	0	2803142..2803270	-	42	197286409	-	PMI2562	-	hypothetical protein
2495	 33.01	-1	2803267..2803878	-	203	197286410	-	PMI2563	-	hypothetical protein
2496	 46.20	+1	2803886..2804794	-	302	197286411	-	PMI2564	-	hypothetical protein
2497	 45.56	+1	2804931..2805110	-	59	197286412	-	PMI2565	-	hypothetical protein
2498	 48.65	+1	2805195..2805416	+	73	197286413	-	PMI2566	-	hypothetical protein
2499	 29.17	-2	2805837..2806076	-	79	197286414	-	PMI2567	-	hypothetical protein
2500	 30.00	-1	2806076..2806375	-	99	197286415	-	PMI2568	-	hypothetical protein
2501	 38.48	0	2806718..2807125	+	135	197286416	-	PMI2569	-	hypothetical protein
2502	 53.17	+2	2807168..2808679	-	503	197286417	-	PMI2570	-	hypothetical protein
2503	 61.36	+2	2808679..2809017	-	112	197286418	-	PMI2571	-	hypothetical protein
2504	 58.06	+2	2809018..2810457	-	479	197286419	-	PMI2572	-	hypothetical protein
2505	 59.79	+2	2810475..2811449	-	324	197286420	-	PMI2573	-	hypothetical protein
2506	 59.41	+2	2811446..2811886	-	146	197286421	-	PMI2574	-	lipoprotein
2507	 55.35	+2	2811965..2814190	-	741	197286422	-	PMI2575	-	adhesin
2508	 60.46	+2	2814285..2817152	-	955	197286423	-	PMI2576	-	hypothetical protein
2509	 60.96	+2	2817152..2817589	-	145	197286424	-	PMI2577	-	lipoprotein
2510	 60.91	+2	2817586..2818071	-	161	197286425	-	PMI2578	-	hypothetical protein
2511	 60.45	+2	2818068..2819564	-	498	197286426	-	PMI2579	-	hypothetical protein
2512	 60.20	+2	2819561..2820457	-	298	197286427	-	PMI2580	-	hypothetical protein
2513	 57.52	+2	2820454..2821098	-	214	197286428	-	PMI2581	-	hypothetical protein
2514	 56.59	+2	2821091..2821507	-	138	197286429	-	PMI2582	-	hypothetical protein
2515	 50.00	+2	2821520..2821933	-	137	197286430	-	PMI2583	-	hypothetical protein
2516	 54.58	+2	2821930..2822169	-	79	197286431	-	PMI2584	-	hypothetical protein
2517	 56.57	+2	2822166..2822492	-	108	197286432	-	PMI2585	-	hypothetical protein
2518	 52.22	+2	2822639..2823247	+	202	197286433	-	PMI2586	-	hypothetical protein
2519	 54.53	+2	2823335..2824084	-	249	197286434	-	PMI2587	-	hypothetical protein
2520	 54.70	+2	2824071..2826218	-	715	197286435	-	PMI2588	-	plasmid transfer protein
2521	 54.04	+2	2826377..2826574	-	65	197286436	-	PMI2589	-	subunit of ATP synthase
2522	 57.66	+2	2826574..2827128	-	184	197286437	-	PMI2590	-	hypothetical protein
2523	 58.06	+2	2827118..2827756	-	212	197286438	-	PMI2591	-	lytic transglycosylase
2524	 56.64	+2	2827769..2828506	-	245	197286439	-	PMI2592	-	hypothetical protein
2525	 56.28	+2	2828517..2829257	-	246	197286440	-	PMI2593	-	hypothetical protein
2526	 56.11	+2	2829254..2829916	-	220	197286441	-	PMI2594	-	conjugal transfer protein
2527	 36.25	0	2830683..2832671	-	662	197286442	-	PMI2596	-	siderophore TonB-dependent receptor
2528	 30.98	-1	2832928..2834157	+	409	197286443	-	PMI2597	-	MFS-family transporter
2529	 32.38	-1	2834189..2834926	+	245	197286444	-	PMI2598	-	hypothetical protein
2530	 34.76	-1	2834947..2841051	+	2034	197286445	-	PMI2599	-	non-ribosomal peptide synthase (siderophore synthase)
2531	 38.52	0	2841064..2850279	+	3071	197286446	nrpS	PMI2600	-	non-ribosomal peptide synthase (siderophore synthase)
2532	 38.29	0	2850279..2851367	+	362	197286447	nrpU	PMI2601	-	siderophore biosynthetic protein
2533	 34.24	-1	2851367..2852140	+	257	197286448	nrpT	PMI2602	-	siderophore biosynthetic protein (thioesterase)
2534	 32.65	-1	2852159..2853925	+	588	197286449	nrpA	PMI2603	-	siderophore ABC transporter, ATP-binding/permease protein
2535	 32.70	-1	2853918..2855645	+	575	197286450	nrpB	PMI2604	-	siderophore ABC transporter, ATP-binding/permease protein
2536	 26.80	-2	2855658..2856407	+	249	197286451	nrpG	PMI2605	-	4'-phosphopantetheinyl transferase
2537	 44.44	0	2857629..2857817	+	62	197286452	-	PMI2608	-	prophage regulatory protein
2538	 44.22	0	2857976..2858278	+	100	197286453	insN	PMI2610	-	transposase for insertion sequence element IS911
2539	 49.77	+2	2859139..2860203	+	354	197286454	-	PMI2612	-	transposase
2540	 33.88	-1	2862321..2864690	-	789	197286455	-	PMI2618	-	TonB-dependent receptor
2541	 35.86	0	2864701..2866794	-	697	197286456	-	PMI2619	-	TonB-dependent receptor
2542	 47.73	+1	2872070..2872993	-	307	197286457	-	PMI2627	-	transposase
2543	 44.66	+1	2873014..2873481	-	155	197286458	-	PMI2628	-	hypothetical protein
2544	 43.96	0	2873465..2873671	-	68	197286459	-	PMI2629	-	hypothetical protein
2545	 51.73	+2	2874365..2876419	-	684	197286460	-	PMI2630	-	topoisomerase
2546	 47.49	+1	2876429..2876965	-	178	197286461	-	PMI2631	-	lipoprotein
2547	 42.70	0	2877013..2877717	-	234	197286462	-	PMI2632	-	hypothetical protein
2548	 36.99	0	2878000..2878518	+	172	197286463	-	PMI2633	-	hypothetical protein
2549	 41.98	0	2878555..2878716	+	53	197286464	-	PMI2634	-	hypothetical protein
2550	 49.54	+2	2878804..2880099	-	431	197286465	-	PMI2635	-	hypothetical protein
2551	 45.96	+1	2880226..2880510	-	94	197286466	-	PMI2636	-	hypothetical protein
2552	 50.25	+2	2880500..2881090	-	196	197286467	-	PMI2637	-	hypothetical protein
2553	 50.10	+2	2881005..2881517	-	170	197286468	-	PMI2638	-	hypothetical protein
2554	 49.33	+1	2881615..2883264	-	549	197286469	-	PMI2639	-	hypothetical protein
2555	 52.25	+2	2883279..2884631	-	450	197286470	-	PMI2640	-	DNA helicase
2556	 46.58	+1	2884624..2885355	-	243	197286471	-	PMI2641	-	hypothetical protein
2557	 46.62	+1	2885352..2886224	-	290	197286472	-	PMI2642	-	chromosome partitioning related protein
2558	 35.37	0	2886711..2887889	-	392	197286473	-	PMI2644	-	hypothetical protein
2559	 34.67	-1	2887886..2888482	-	198	197286474	-	PMI2645	-	hypothetical protein
2560	 36.98	0	2888961..2889590	+	209	197286475	-	PMI2646	-	hypothetical protein
2561	 41.07	0	2889677..2891872	+	731	197286476	-	PMI2647	-	hypothetical protein
2562	 39.84	0	2891965..2896899	+	1644	197286477	-	PMI2648	-	hypothetical protein
2563	 43.17	0	2897135..2898466	-	443	197286478	-	PMI2649	-	MFS-family transporter
2564	 40.97	0	2898550..2898837	-	95	197286479	fixX	PMI2650	-	ferredoxin subunit for carnitine metabolism
2565	 44.55	0	2898834..2900126	-	430	197286480	fixC	PMI2651	-	FAD-dependent oxidoreductase subunit for carnitine metabolism
2566	 41.96	0	2900182..2901120	-	312	197286481	fixB	PMI2652	-	electron transfer flavoprotein alpha subunit for carnitine metabolism
2567	 42.51	0	2901132..2901905	-	257	197286482	fixA	PMI2653	-	electron transfer flavoprotein beta subunit for carnitine metabolism
2568	 43.11	0	2902504..2904048	+	514	197286483	caiT	PMI2654	-	L-carnitine/gamma-butyrobetaine antiporter
2569	 45.41	+1	2904061..2905203	+	380	197286484	caiA	PMI2655	-	crotonobetainyl-CoA dehydrogenase
2570	 43.90	0	2905273..2906493	+	406	197286485	caiB	PMI2656	-	crotonobetainyl-coa:carnitine CoA-transferase
2571	 41.62	0	2906571..2908127	+	518	197286486	caiC	PMI2657	-	probable crotonobetaine/carnitine-CoA ligase
2572	 46.06	+1	2908193..2908978	+	261	197286487	caiD	PMI2658	-	carnitinyl-CoA dehydratase
2573	 42.42	0	2909018..2909611	+	197	197286488	caiE	PMI2659	-	transferase in carnitine metabolism
2574	 40.46	0	2909675..2910067	-	130	197286489	caiF	PMI2660	-	transcriptional activator for carnitine metabolism
2575	 41.78	0	2910786..2911448	-	220	197286490	fsaA	PMI2661	-	fructose-6-phosphate aldolase
2576	 37.25	0	2911710..2912321	-	203	197286491	-	PMI2662	-	chitin binding protein
2577	 38.96	0	2912650..2913111	-	153	197286492	-	PMI2663	-	regulatory protein
2578	 37.68	0	2913469..2914458	+	329	197286493	-	PMI2664	-	hypothetical protein
2579	 42.69	0	2914458..2915600	+	380	197286494	-	PMI2665	-	hypothetical protein
2580	 42.53	0	2915600..2916751	+	383	197286495	-	PMI2666	-	lipoprotein
2581	 43.52	0	2917027..2917821	+	264	197286496	-	PMI2667	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
2582	 39.75	0	2917986..2919404	+	472	197286497	pacA	PMI2668	-	peptidoglycan O-acyl transferase
2583	 40.54	0	2919391..2920584	+	397	197286498	pacB	PMI2669	-	peptidoglycan O-acyl transferase
2584	 41.85	0	2920559..2921791	+	410	197286499	-	PMI2670	-	lipoprotein
39.69	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.