IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.69   STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2449	 37.06	0	2760142..2761134	-	330	197286364	-	PMI2517	-	glycosyltransferase
2450	 41.12	0	2761552..2762052	-	166	197286365	hycI	PMI2518	-	hydrogenase maturation protease
2451	 37.47	0	2762049..2762459	-	136	197286366	hyfJ	PMI2519	-	hydrogenase-4 component J
2452	 43.30	0	2762452..2763234	-	260	197286367	hyfI	PMI2520	-	hydrogenase-4 component I
2453	 40.36	0	2763231..2763785	-	184	197286368	hyfH	PMI2521	-	hydrogenase-4 component H
2454	 42.16	0	2763797..2765530	-	577	197286369	hyfG	PMI2522	-	hydrogenase-4 component G
2455	 41.11	0	2765532..2767100	-	522	197286370	hyfF	PMI2523	-	hydrogenase-4 component F
2456	 42.86	0	2767105..2767755	-	216	197286371	hyfE	PMI2524	-	hydrogenase-4 component E
2457	 42.37	0	2767767..2769215	-	482	197286372	hyfD	PMI2525	-	hydrogenase-4 component D
2458	 44.16	0	2769222..2770172	-	316	197286373	hyfC	PMI2526	-	hydrogenase-4 component C
2459	 43.55	0	2770185..2772200	-	671	197286374	hyfB	PMI2527	-	hydrogenase-4 component B
2460	 46.86	+1	2772202..2772822	-	206	197286375	hyfA	PMI2528	-	hydrogenase-4 component A
2461	 36.27	0	2773060..2773536	-	158	197286376	rpiB	PMI2529	-	ribose 5-phosphate isomerase
2462	 41.98	0	2774425..2774991	-	188	197286377	efp	PMI2530	-	elongation factor P
2463	 43.05	0	2775035..2776063	+	342	197286378	-	PMI2531	-	radical SAM superfamily protein
2464	 37.04	0	2776204..2776824	-	206	197286379	-	PMI2532	-	hypothetical protein
2465	 35.50	0	2776918..2779461	-	847	197286380	-	PMI2533	-	outer membrane usher protein
2466	 28.68	-2	2779505..2780320	-	271	197286381	-	PMI2534	-	fimbrial chaperone
2467	 29.71	-2	2780325..2781041	-	238	197286382	-	PMI2535	-	fimbrial chaperone
2468	 34.77	-1	2781049..2781606	-	185	197286383	-	PMI2536	-	fimbrial protein
2469	 34.55	-1	2781609..2782184	-	191	197286384	-	PMI2537	-	fimbrial protein
2470	 30.47	-1	2782162..2782860	-	232	197286385	-	PMI2538	-	fimbrial chaperone
2471	 37.06	0	2782954..2783517	-	187	197286386	-	PMI2539	-	fimbrial subunit
2472	 36.46	0	2784650..2785288	+	212	197286387	-	PMI2540	-	hypothetical protein
2473	 43.77	0	2785397..2785741	-	114	197286388	-	PMI2541	-	lipoprotein
2474	 33.54	-1	2786110..2786583	+	157	197286389	-	PMI2542	-	hypothetical protein
2475	 43.59	0	2786681..2788327	-	548	197286390	groL	PMI2543	-	60 Kda chaperonin
2476	 39.46	0	2788380..2788673	-	97	197286391	groS	PMI2544	-	10 Kda chaperonin
2477	 39.25	0	2788843..2789349	-	168	197286392	fxsA	PMI2545	-	membrane protein FxsA (suppressor of F exclusion of phage T7)
2478	 39.44	0	2789722..2791146	+	474	197286393	aspA	PMI2546	-	aspartate ammonia-lyase
2479	 39.59	0	2791305..2792630	+	441	197286394	dcuA	PMI2547	-	anaerobic C4-dicarboxylate transporter
2480	 41.54	0	2792823..2793395	+	190	197286395	-	PMI2548	-	hypothetical protein
2481	 41.74	0	2793999..2795069	-	356	197286396	-	PMI2549	-	phage integrase
2482	 48.65	+1	2795085..2796677	-	530	197286397	-	PMI2550	-	helicase
2483	 50.15	+2	2796853..2797179	-	108	197286398	-	PMI2551	-	hypothetical protein
2484	 54.49	+2	2797323..2798324	-	333	197286399	-	PMI2552	-	plasmid-related protein
2485	 49.67	+2	2798409..2798708	-	99	197286400	-	PMI2553	-	hypothetical protein
2486	 57.03	+2	2798718..2799692	-	324	197286401	-	PMI2554	-	DNA primase
2487	 51.85	+2	2799845..2800492	-	215	197286402	-	PMI2555	-	hypothetical protein
2488	 47.95	+1	2800492..2801004	-	170	197286403	-	PMI2556	-	hypothetical protein
2489	 51.26	+2	2801115..2801471	-	118	197286404	-	PMI2557	-	hypothetical protein
2490	 52.01	+2	2801568..2801990	-	140	197286405	-	PMI2558	-	hypothetical protein
2491	 46.83	+1	2802157..2802534	-	125	197286406	-	PMI2559	-	hypothetical protein
2492	 49.28	+1	2802556..2802831	-	91	197286407	-	PMI2560	-	hypothetical protein
2493	 42.56	0	2802881..2803075	-	64	197286408	-	PMI2561	-	hypothetical protein
2494	 43.41	0	2803142..2803270	-	42	197286409	-	PMI2562	-	hypothetical protein
2495	 33.01	-1	2803267..2803878	-	203	197286410	-	PMI2563	-	hypothetical protein
2496	 46.20	+1	2803886..2804794	-	302	197286411	-	PMI2564	-	hypothetical protein
2497	 45.56	+1	2804931..2805110	-	59	197286412	-	PMI2565	-	hypothetical protein
2498	 48.65	+1	2805195..2805416	+	73	197286413	-	PMI2566	-	hypothetical protein
2499	 29.17	-2	2805837..2806076	-	79	197286414	-	PMI2567	-	hypothetical protein
2500	 30.00	-1	2806076..2806375	-	99	197286415	-	PMI2568	-	hypothetical protein
2501	 38.48	0	2806718..2807125	+	135	197286416	-	PMI2569	-	hypothetical protein
2502	 53.17	+2	2807168..2808679	-	503	197286417	-	PMI2570	-	hypothetical protein
2503	 61.36	+2	2808679..2809017	-	112	197286418	-	PMI2571	-	hypothetical protein
2504	 58.06	+2	2809018..2810457	-	479	197286419	-	PMI2572	-	hypothetical protein
2505	 59.79	+2	2810475..2811449	-	324	197286420	-	PMI2573	-	hypothetical protein
2506	 59.41	+2	2811446..2811886	-	146	197286421	-	PMI2574	-	lipoprotein
2507	 55.35	+2	2811965..2814190	-	741	197286422	-	PMI2575	-	adhesin
2508	 60.46	+2	2814285..2817152	-	955	197286423	-	PMI2576	-	hypothetical protein
2509	 60.96	+2	2817152..2817589	-	145	197286424	-	PMI2577	-	lipoprotein
2510	 60.91	+2	2817586..2818071	-	161	197286425	-	PMI2578	-	hypothetical protein
2511	 60.45	+2	2818068..2819564	-	498	197286426	-	PMI2579	-	hypothetical protein
2512	 60.20	+2	2819561..2820457	-	298	197286427	-	PMI2580	-	hypothetical protein
2513	 57.52	+2	2820454..2821098	-	214	197286428	-	PMI2581	-	hypothetical protein
2514	 56.59	+2	2821091..2821507	-	138	197286429	-	PMI2582	-	hypothetical protein
2515	 50.00	+2	2821520..2821933	-	137	197286430	-	PMI2583	-	hypothetical protein
2516	 54.58	+2	2821930..2822169	-	79	197286431	-	PMI2584	-	hypothetical protein
2517	 56.57	+2	2822166..2822492	-	108	197286432	-	PMI2585	-	hypothetical protein
2518	 52.22	+2	2822639..2823247	+	202	197286433	-	PMI2586	-	hypothetical protein
2519	 54.53	+2	2823335..2824084	-	249	197286434	-	PMI2587	-	hypothetical protein
2520	 54.70	+2	2824071..2826218	-	715	197286435	-	PMI2588	-	plasmid transfer protein
2521	 54.04	+2	2826377..2826574	-	65	197286436	-	PMI2589	-	subunit of ATP synthase
2522	 57.66	+2	2826574..2827128	-	184	197286437	-	PMI2590	-	hypothetical protein
2523	 58.06	+2	2827118..2827756	-	212	197286438	-	PMI2591	-	lytic transglycosylase
2524	 56.64	+2	2827769..2828506	-	245	197286439	-	PMI2592	-	hypothetical protein
2525	 56.28	+2	2828517..2829257	-	246	197286440	-	PMI2593	-	hypothetical protein
2526	 56.11	+2	2829254..2829916	-	220	197286441	-	PMI2594	-	conjugal transfer protein
2527	 36.25	0	2830683..2832671	-	662	197286442	-	PMI2596	-	siderophore TonB-dependent receptor
2528	 30.98	-1	2832928..2834157	+	409	197286443	-	PMI2597	-	MFS-family transporter
2529	 32.38	-1	2834189..2834926	+	245	197286444	-	PMI2598	-	hypothetical protein
2530	 34.76	-1	2834947..2841051	+	2034	197286445	-	PMI2599	-	non-ribosomal peptide synthase (siderophore synthase)
2531	 38.52	0	2841064..2850279	+	3071	197286446	nrpS	PMI2600	-	non-ribosomal peptide synthase (siderophore synthase)
2532	 38.29	0	2850279..2851367	+	362	197286447	nrpU	PMI2601	-	siderophore biosynthetic protein
2533	 34.24	-1	2851367..2852140	+	257	197286448	nrpT	PMI2602	-	siderophore biosynthetic protein (thioesterase)
2534	 32.65	-1	2852159..2853925	+	588	197286449	nrpA	PMI2603	-	siderophore ABC transporter, ATP-binding/permease protein
2535	 32.70	-1	2853918..2855645	+	575	197286450	nrpB	PMI2604	-	siderophore ABC transporter, ATP-binding/permease protein
2536	 26.80	-2	2855658..2856407	+	249	197286451	nrpG	PMI2605	-	4'-phosphopantetheinyl transferase
2537	 44.44	0	2857629..2857817	+	62	197286452	-	PMI2608	-	prophage regulatory protein
2538	 44.22	0	2857976..2858278	+	100	197286453	insN	PMI2610	-	transposase for insertion sequence element IS911
2539	 49.77	+2	2859139..2860203	+	354	197286454	-	PMI2612	-	transposase
2540	 33.88	-1	2862321..2864690	-	789	197286455	-	PMI2618	-	TonB-dependent receptor
2541	 35.86	0	2864701..2866794	-	697	197286456	-	PMI2619	-	TonB-dependent receptor
2542	 47.73	+1	2872070..2872993	-	307	197286457	-	PMI2627	-	transposase
2543	 44.66	+1	2873014..2873481	-	155	197286458	-	PMI2628	-	hypothetical protein
2544	 43.96	0	2873465..2873671	-	68	197286459	-	PMI2629	-	hypothetical protein
2545	 51.73	+2	2874365..2876419	-	684	197286460	-	PMI2630	-	topoisomerase
2546	 47.49	+1	2876429..2876965	-	178	197286461	-	PMI2631	-	lipoprotein
2547	 42.70	0	2877013..2877717	-	234	197286462	-	PMI2632	-	hypothetical protein
2548	 36.99	0	2878000..2878518	+	172	197286463	-	PMI2633	-	hypothetical protein
39.69	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.