IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.69   STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2409	 47.02	+1	2707018..2713440	-	2140	197286324	-	PMI2478	-	DNA helicase
2410	 46.05	+1	2713633..2718603	-	1656	197286325	-	PMI2479	-	plasmid-related protein
2411	 45.61	+1	2718606..2721569	-	987	197286326	-	PMI2480	-	plasmid ATP-dependent helicase
2412	 48.38	+1	2721596..2722519	-	307	197286327	-	PMI2481	-	plasmid-related protein
2413	 52.33	+2	2722837..2723136	-	99	197286328	-	PMI2482	-	plasmid-related protein
2414	 48.90	+1	2723224..2724129	-	301	197286329	-	PMI2483	-	plasmid-related exonuclease
2415	 50.22	+2	2724786..2725235	+	149	197286330	umuD	PMI2484	-	DNA repair protein
2416	 48.46	+1	2725243..2726511	+	422	197286331	umuC	PMI2485	-	DNA repair protein
2417	 49.12	+1	2726550..2726720	+	56	197286332	-	PMI2485A	-	plasmid-related protein
2418	 45.68	+1	2726717..2726878	+	53	197286333	-	PMI2486	-	conjugative transposon protein
2419	 48.81	+1	2727158..2727325	+	55	197286334	-	PMI2487	-	conjugative transposon protein
2420	 49.85	+2	2727430..2728404	+	324	197286335	-	PMI2488	-	plasmid-related protein
2421	 50.00	+2	2728407..2728676	+	89	197286336	-	PMI2489	-	plasmid-related protein
2422	 46.05	+1	2728678..2729919	+	413	197286337	-	PMI2490	-	integrase
2423	 46.15	+1	2729936..2730130	-	64	197286338	-	PMI2491	-	DNA-binding protein
2424	 39.48	0	2731174..2731710	+	178	197286339	-	PMI2492	-	hypothetical protein
2425	 37.13	0	2731700..2732620	+	306	197286340	-	PMI2493	-	hypothetical protein
2426	 31.32	-1	2732932..2733378	-	148	197286341	rimI	PMI2494	-	ribosomal-protein-alanine acetyltransferase
2427	 38.93	0	2733347..2733757	-	136	197286342	holD	PMI2495	-	DNA polymerase III, psi subunit
2428	 40.73	0	2733887..2734900	+	337	197286343	rsmC	PMI2496	-	ribosomal RNA small subunit methyltransferase C
2429	 39.49	0	2735017..2735292	-	91	197286344	-	PMI2497	-	hypothetical protein
2430	 39.78	0	2735464..2736006	-	180	197286345	-	PMI2498	-	acetyltransferase
2431	 42.31	0	2736003..2737640	-	545	197286346	-	PMI2499	-	Na+/Pi-cotransporter
2432	 42.64	0	2738069..2739508	-	479	197286347	phoA	PMI2500	-	alkaline phosphatase precursor
2433	 47.45	+1	2739680..2740912	-	410	197286348	-	PMI2501	-	transposase
2434	 44.72	+1	2740959..2741327	+	122	197286349	-	PMI2502	-	transposase
2435	 41.94	0	2741466..2743010	-	514	197286350	-	PMI2503	-	esterase
2436	 39.30	0	2743195..2744334	-	379	197286351	-	PMI2504	-	hypothetical protein
2437	 37.19	0	2744652..2745896	-	414	197286352	nadR	PMI2505	-	transcriptional regulator
2438	 44.54	0	2745908..2747299	-	463	197286353	radA	PMI2506	-	DNA repair protein
2439	 41.82	0	2747333..2748310	-	325	197286354	serB	PMI2507	-	phosphoserine phosphatase
2440	 39.54	0	2748420..2749112	+	230	197286355	smp	PMI2508	-	hypothetical protein
2441	 40.34	0	2749359..2750900	+	513	197286356	-	PMI2509	-	hypothetical protein
2442	 36.91	0	2750872..2751738	+	288	197286357	-	PMI2510	-	radical SAM superfamily protein
2443	 35.66	0	2751837..2754803	+	988	197286358	-	PMI2511	-	autotransporter
2444	 40.52	0	2754905..2755516	-	203	197286359	yntE	PMI2512	-	nickel/di-oligopepetide ABC transporter, ATP-binding protein
2445	 42.41	0	2755584..2756387	-	267	197286360	yntD	PMI2513	-	nickel/di-oligopepetide ABC transporter, ATP-binding protein
2446	 40.96	0	2756381..2757193	-	270	197286361	yntC	PMI2514	-	nickel/di-oligopepetide ABC transporter, permease protein
2447	 43.70	0	2757190..2758173	-	327	197286362	yntB	PMI2515	-	nickel/di-oligopepetide ABC transporter, permease protein
2448	 42.68	0	2758158..2759741	-	527	197286363	yntA	PMI2516	-	nickel/di-oligopepetide ABC transporter, substrate-binding protein
2449	 37.06	0	2760142..2761134	-	330	197286364	-	PMI2517	-	glycosyltransferase
2450	 41.12	0	2761552..2762052	-	166	197286365	hycI	PMI2518	-	hydrogenase maturation protease
2451	 37.47	0	2762049..2762459	-	136	197286366	hyfJ	PMI2519	-	hydrogenase-4 component J
2452	 43.30	0	2762452..2763234	-	260	197286367	hyfI	PMI2520	-	hydrogenase-4 component I
2453	 40.36	0	2763231..2763785	-	184	197286368	hyfH	PMI2521	-	hydrogenase-4 component H
2454	 42.16	0	2763797..2765530	-	577	197286369	hyfG	PMI2522	-	hydrogenase-4 component G
2455	 41.11	0	2765532..2767100	-	522	197286370	hyfF	PMI2523	-	hydrogenase-4 component F
2456	 42.86	0	2767105..2767755	-	216	197286371	hyfE	PMI2524	-	hydrogenase-4 component E
2457	 42.37	0	2767767..2769215	-	482	197286372	hyfD	PMI2525	-	hydrogenase-4 component D
2458	 44.16	0	2769222..2770172	-	316	197286373	hyfC	PMI2526	-	hydrogenase-4 component C
2459	 43.55	0	2770185..2772200	-	671	197286374	hyfB	PMI2527	-	hydrogenase-4 component B
2460	 46.86	+1	2772202..2772822	-	206	197286375	hyfA	PMI2528	-	hydrogenase-4 component A
2461	 36.27	0	2773060..2773536	-	158	197286376	rpiB	PMI2529	-	ribose 5-phosphate isomerase
2462	 41.98	0	2774425..2774991	-	188	197286377	efp	PMI2530	-	elongation factor P
2463	 43.05	0	2775035..2776063	+	342	197286378	-	PMI2531	-	radical SAM superfamily protein
2464	 37.04	0	2776204..2776824	-	206	197286379	-	PMI2532	-	hypothetical protein
2465	 35.50	0	2776918..2779461	-	847	197286380	-	PMI2533	-	outer membrane usher protein
2466	 28.68	-2	2779505..2780320	-	271	197286381	-	PMI2534	-	fimbrial chaperone
2467	 29.71	-2	2780325..2781041	-	238	197286382	-	PMI2535	-	fimbrial chaperone
2468	 34.77	-1	2781049..2781606	-	185	197286383	-	PMI2536	-	fimbrial protein
2469	 34.55	-1	2781609..2782184	-	191	197286384	-	PMI2537	-	fimbrial protein
2470	 30.47	-1	2782162..2782860	-	232	197286385	-	PMI2538	-	fimbrial chaperone
2471	 37.06	0	2782954..2783517	-	187	197286386	-	PMI2539	-	fimbrial subunit
2472	 36.46	0	2784650..2785288	+	212	197286387	-	PMI2540	-	hypothetical protein
2473	 43.77	0	2785397..2785741	-	114	197286388	-	PMI2541	-	lipoprotein
2474	 33.54	-1	2786110..2786583	+	157	197286389	-	PMI2542	-	hypothetical protein
2475	 43.59	0	2786681..2788327	-	548	197286390	groL	PMI2543	-	60 Kda chaperonin
2476	 39.46	0	2788380..2788673	-	97	197286391	groS	PMI2544	-	10 Kda chaperonin
2477	 39.25	0	2788843..2789349	-	168	197286392	fxsA	PMI2545	-	membrane protein FxsA (suppressor of F exclusion of phage T7)
2478	 39.44	0	2789722..2791146	+	474	197286393	aspA	PMI2546	-	aspartate ammonia-lyase
2479	 39.59	0	2791305..2792630	+	441	197286394	dcuA	PMI2547	-	anaerobic C4-dicarboxylate transporter
2480	 41.54	0	2792823..2793395	+	190	197286395	-	PMI2548	-	hypothetical protein
2481	 41.74	0	2793999..2795069	-	356	197286396	-	PMI2549	-	phage integrase
2482	 48.65	+1	2795085..2796677	-	530	197286397	-	PMI2550	-	helicase
2483	 50.15	+2	2796853..2797179	-	108	197286398	-	PMI2551	-	hypothetical protein
2484	 54.49	+2	2797323..2798324	-	333	197286399	-	PMI2552	-	plasmid-related protein
2485	 49.67	+2	2798409..2798708	-	99	197286400	-	PMI2553	-	hypothetical protein
2486	 57.03	+2	2798718..2799692	-	324	197286401	-	PMI2554	-	DNA primase
2487	 51.85	+2	2799845..2800492	-	215	197286402	-	PMI2555	-	hypothetical protein
2488	 47.95	+1	2800492..2801004	-	170	197286403	-	PMI2556	-	hypothetical protein
2489	 51.26	+2	2801115..2801471	-	118	197286404	-	PMI2557	-	hypothetical protein
2490	 52.01	+2	2801568..2801990	-	140	197286405	-	PMI2558	-	hypothetical protein
2491	 46.83	+1	2802157..2802534	-	125	197286406	-	PMI2559	-	hypothetical protein
2492	 49.28	+1	2802556..2802831	-	91	197286407	-	PMI2560	-	hypothetical protein
2493	 42.56	0	2802881..2803075	-	64	197286408	-	PMI2561	-	hypothetical protein
2494	 43.41	0	2803142..2803270	-	42	197286409	-	PMI2562	-	hypothetical protein
2495	 33.01	-1	2803267..2803878	-	203	197286410	-	PMI2563	-	hypothetical protein
2496	 46.20	+1	2803886..2804794	-	302	197286411	-	PMI2564	-	hypothetical protein
2497	 45.56	+1	2804931..2805110	-	59	197286412	-	PMI2565	-	hypothetical protein
2498	 48.65	+1	2805195..2805416	+	73	197286413	-	PMI2566	-	hypothetical protein
2499	 29.17	-2	2805837..2806076	-	79	197286414	-	PMI2567	-	hypothetical protein
2500	 30.00	-1	2806076..2806375	-	99	197286415	-	PMI2568	-	hypothetical protein
2501	 38.48	0	2806718..2807125	+	135	197286416	-	PMI2569	-	hypothetical protein
2502	 53.17	+2	2807168..2808679	-	503	197286417	-	PMI2570	-	hypothetical protein
2503	 61.36	+2	2808679..2809017	-	112	197286418	-	PMI2571	-	hypothetical protein
2504	 58.06	+2	2809018..2810457	-	479	197286419	-	PMI2572	-	hypothetical protein
2505	 59.79	+2	2810475..2811449	-	324	197286420	-	PMI2573	-	hypothetical protein
2506	 59.41	+2	2811446..2811886	-	146	197286421	-	PMI2574	-	lipoprotein
2507	 55.35	+2	2811965..2814190	-	741	197286422	-	PMI2575	-	adhesin
2508	 60.46	+2	2814285..2817152	-	955	197286423	-	PMI2576	-	hypothetical protein
39.69	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.