IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.69   STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2374	 46.86	+1	2671485..2672438	-	317	197286289	-	PMI2443	-	plasmid-related protein
2375	 46.88	+1	2672537..2673304	-	255	197286290	-	PMI2444	-	plasmid-related protein
2376	 49.90	+2	2673304..2674263	-	319	197286291	-	PMI2445	-	plasmid-related ATPase
2377	 48.18	+1	2674473..2675489	-	338	197286292	-	PMI2446	-	plasmid-related protein
2378	 45.14	+1	2675550..2675693	-	47	197286293	-	PMI2447	-	plasmid-related protein
2379	 47.37	+1	2675777..2676595	-	272	197286294	-	PMI2448	-	phage recombination protein
2380	 48.57	+1	2676675..2677094	-	139	197286295	-	PMI2449	-	plasmid-related single-stranded DNA-binding protein
2381	 46.48	+1	2677110..2677436	-	108	197286296	-	PMI2450	-	plasmid-related protein
2382	 46.93	+1	2677804..2678406	+	200	197286297	-	PMI2451	-	plasmid-related protein
2383	 42.67	0	2678515..2679189	+	224	197286298	-	PMI2452	-	endonuclease precursor
2384	 39.11	0	2679254..2679772	-	172	197286299	-	PMI2453	-	plasmid-related regulatory protein
2385	 38.04	0	2679792..2682065	-	757	197286300	-	PMI2454	-	plasmid-related membrane protein
2386	 53.01	+2	2682075..2682323	-	82	197286301	-	PMI2455	-	plasmid-related glycin-rich membrane protein
2387	 49.88	+2	2682565..2686257	-	1230	197286302	-	PMI2456	-	mating pair stabilization protein
2388	 50.53	+2	2686260..2687288	-	342	197286303	-	PMI2457	-	plasmid pilus assembly
2389	 48.85	+1	2687272..2688399	-	375	197286304	-	PMI2458	-	plasmid pilus assembly protein
2390	 51.27	+2	2688407..2688919	-	170	197286305	-	PMI2459	-	plasmid conjugation signal peptidase
2391	 47.99	+1	2688903..2689250	-	115	197286306	-	PMI2460	-	plasmid-related protein
2392	 49.38	+1	2689243..2691642	-	799	197286307	-	PMI2461	-	plasmid pilus assembly protein
2393	 50.07	+2	2691642..2692334	-	230	197286308	-	PMI2462	-	plasmid-related disulfide bond isomerase
2394	 42.17	0	2692466..2693404	-	312	197286309	-	PMI2463	-	plasmid-related protein
2395	 41.37	0	2693397..2694230	-	277	197286310	-	PMI2464	-	plasmid-related protein
2396	 51.42	+2	2694408..2694794	-	128	197286311	-	PMI2465	-	plasmid-related protein
2397	 48.39	+1	2694791..2695441	-	216	197286312	-	PMI2466	-	plasmid-related protein
2398	 50.85	+2	2695438..2696727	-	429	197286313	-	PMI2467	-	plasmid pilus assembly protein
2399	 49.11	+1	2696730..2697629	-	299	197286314	-	PMI2468	-	plasmid-related protein
2400	 50.40	+2	2697610..2698236	-	208	197286315	-	PMI2469	-	plasmid pilus assembly protein
2401	 51.42	+2	2698233..2698514	-	93	197286316	-	PMI2470	-	plasmid pilus assembly protein
2402	 45.83	+1	2698550..2698789	+	79	197286317	-	PMI2471	-	plasmid-related protein
2403	 41.33	0	2698803..2699390	+	195	197286318	-	PMI2472	-	plasmid-related protein
2404	 47.13	+1	2699417..2700061	-	214	197286319	-	PMI2473	-	plasmid-related protein
2405	 49.38	+1	2700039..2700599	-	186	197286320	-	PMI2474	-	plasmid-related protein
2406	 49.92	+2	2700609..2702429	-	606	197286321	-	PMI2475	-	plasmid conjugative transfer protein
2407	 48.91	+1	2702478..2704628	-	716	197286322	-	PMI2476	-	plasmid conjugative relaxase
2408	 42.84	0	2704877..2707012	-	711	197286323	-	PMI2477	-	DNA helicase
2409	 47.02	+1	2707018..2713440	-	2140	197286324	-	PMI2478	-	DNA helicase
2410	 46.05	+1	2713633..2718603	-	1656	197286325	-	PMI2479	-	plasmid-related protein
2411	 45.61	+1	2718606..2721569	-	987	197286326	-	PMI2480	-	plasmid ATP-dependent helicase
2412	 48.38	+1	2721596..2722519	-	307	197286327	-	PMI2481	-	plasmid-related protein
2413	 52.33	+2	2722837..2723136	-	99	197286328	-	PMI2482	-	plasmid-related protein
2414	 48.90	+1	2723224..2724129	-	301	197286329	-	PMI2483	-	plasmid-related exonuclease
2415	 50.22	+2	2724786..2725235	+	149	197286330	umuD	PMI2484	-	DNA repair protein
2416	 48.46	+1	2725243..2726511	+	422	197286331	umuC	PMI2485	-	DNA repair protein
2417	 49.12	+1	2726550..2726720	+	56	197286332	-	PMI2485A	-	plasmid-related protein
2418	 45.68	+1	2726717..2726878	+	53	197286333	-	PMI2486	-	conjugative transposon protein
2419	 48.81	+1	2727158..2727325	+	55	197286334	-	PMI2487	-	conjugative transposon protein
2420	 49.85	+2	2727430..2728404	+	324	197286335	-	PMI2488	-	plasmid-related protein
2421	 50.00	+2	2728407..2728676	+	89	197286336	-	PMI2489	-	plasmid-related protein
2422	 46.05	+1	2728678..2729919	+	413	197286337	-	PMI2490	-	integrase
2423	 46.15	+1	2729936..2730130	-	64	197286338	-	PMI2491	-	DNA-binding protein
2424	 39.48	0	2731174..2731710	+	178	197286339	-	PMI2492	-	hypothetical protein
2425	 37.13	0	2731700..2732620	+	306	197286340	-	PMI2493	-	hypothetical protein
2426	 31.32	-1	2732932..2733378	-	148	197286341	rimI	PMI2494	-	ribosomal-protein-alanine acetyltransferase
2427	 38.93	0	2733347..2733757	-	136	197286342	holD	PMI2495	-	DNA polymerase III, psi subunit
2428	 40.73	0	2733887..2734900	+	337	197286343	rsmC	PMI2496	-	ribosomal RNA small subunit methyltransferase C
2429	 39.49	0	2735017..2735292	-	91	197286344	-	PMI2497	-	hypothetical protein
2430	 39.78	0	2735464..2736006	-	180	197286345	-	PMI2498	-	acetyltransferase
2431	 42.31	0	2736003..2737640	-	545	197286346	-	PMI2499	-	Na+/Pi-cotransporter
2432	 42.64	0	2738069..2739508	-	479	197286347	phoA	PMI2500	-	alkaline phosphatase precursor
2433	 47.45	+1	2739680..2740912	-	410	197286348	-	PMI2501	-	transposase
2434	 44.72	+1	2740959..2741327	+	122	197286349	-	PMI2502	-	transposase
2435	 41.94	0	2741466..2743010	-	514	197286350	-	PMI2503	-	esterase
2436	 39.30	0	2743195..2744334	-	379	197286351	-	PMI2504	-	hypothetical protein
2437	 37.19	0	2744652..2745896	-	414	197286352	nadR	PMI2505	-	transcriptional regulator
2438	 44.54	0	2745908..2747299	-	463	197286353	radA	PMI2506	-	DNA repair protein
2439	 41.82	0	2747333..2748310	-	325	197286354	serB	PMI2507	-	phosphoserine phosphatase
2440	 39.54	0	2748420..2749112	+	230	197286355	smp	PMI2508	-	hypothetical protein
2441	 40.34	0	2749359..2750900	+	513	197286356	-	PMI2509	-	hypothetical protein
2442	 36.91	0	2750872..2751738	+	288	197286357	-	PMI2510	-	radical SAM superfamily protein
2443	 35.66	0	2751837..2754803	+	988	197286358	-	PMI2511	-	autotransporter
2444	 40.52	0	2754905..2755516	-	203	197286359	yntE	PMI2512	-	nickel/di-oligopepetide ABC transporter, ATP-binding protein
2445	 42.41	0	2755584..2756387	-	267	197286360	yntD	PMI2513	-	nickel/di-oligopepetide ABC transporter, ATP-binding protein
2446	 40.96	0	2756381..2757193	-	270	197286361	yntC	PMI2514	-	nickel/di-oligopepetide ABC transporter, permease protein
2447	 43.70	0	2757190..2758173	-	327	197286362	yntB	PMI2515	-	nickel/di-oligopepetide ABC transporter, permease protein
2448	 42.68	0	2758158..2759741	-	527	197286363	yntA	PMI2516	-	nickel/di-oligopepetide ABC transporter, substrate-binding protein
2449	 37.06	0	2760142..2761134	-	330	197286364	-	PMI2517	-	glycosyltransferase
2450	 41.12	0	2761552..2762052	-	166	197286365	hycI	PMI2518	-	hydrogenase maturation protease
2451	 37.47	0	2762049..2762459	-	136	197286366	hyfJ	PMI2519	-	hydrogenase-4 component J
2452	 43.30	0	2762452..2763234	-	260	197286367	hyfI	PMI2520	-	hydrogenase-4 component I
2453	 40.36	0	2763231..2763785	-	184	197286368	hyfH	PMI2521	-	hydrogenase-4 component H
2454	 42.16	0	2763797..2765530	-	577	197286369	hyfG	PMI2522	-	hydrogenase-4 component G
2455	 41.11	0	2765532..2767100	-	522	197286370	hyfF	PMI2523	-	hydrogenase-4 component F
2456	 42.86	0	2767105..2767755	-	216	197286371	hyfE	PMI2524	-	hydrogenase-4 component E
2457	 42.37	0	2767767..2769215	-	482	197286372	hyfD	PMI2525	-	hydrogenase-4 component D
2458	 44.16	0	2769222..2770172	-	316	197286373	hyfC	PMI2526	-	hydrogenase-4 component C
2459	 43.55	0	2770185..2772200	-	671	197286374	hyfB	PMI2527	-	hydrogenase-4 component B
2460	 46.86	+1	2772202..2772822	-	206	197286375	hyfA	PMI2528	-	hydrogenase-4 component A
2461	 36.27	0	2773060..2773536	-	158	197286376	rpiB	PMI2529	-	ribose 5-phosphate isomerase
2462	 41.98	0	2774425..2774991	-	188	197286377	efp	PMI2530	-	elongation factor P
2463	 43.05	0	2775035..2776063	+	342	197286378	-	PMI2531	-	radical SAM superfamily protein
2464	 37.04	0	2776204..2776824	-	206	197286379	-	PMI2532	-	hypothetical protein
2465	 35.50	0	2776918..2779461	-	847	197286380	-	PMI2533	-	outer membrane usher protein
2466	 28.68	-2	2779505..2780320	-	271	197286381	-	PMI2534	-	fimbrial chaperone
2467	 29.71	-2	2780325..2781041	-	238	197286382	-	PMI2535	-	fimbrial chaperone
2468	 34.77	-1	2781049..2781606	-	185	197286383	-	PMI2536	-	fimbrial protein
2469	 34.55	-1	2781609..2782184	-	191	197286384	-	PMI2537	-	fimbrial protein
2470	 30.47	-1	2782162..2782860	-	232	197286385	-	PMI2538	-	fimbrial chaperone
2471	 37.06	0	2782954..2783517	-	187	197286386	-	PMI2539	-	fimbrial subunit
2472	 36.46	0	2784650..2785288	+	212	197286387	-	PMI2540	-	hypothetical protein
2473	 43.77	0	2785397..2785741	-	114	197286388	-	PMI2541	-	lipoprotein
39.69	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.