IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
188	 40.60	0	230251..230883	-	210	197284103	-	PMI0193	-	two-component response regulator
189	 43.83	0	231084..231464	-	126	197284104	panD	PMI0194	-	aspartate 1-decarboxylase
190	 40.73	0	231493..232344	-	283	197284105	panC	PMI0195	-	pantoate--beta-alanine ligase
191	 43.31	0	232388..233179	-	263	197284106	panB	PMI0196	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
192	 42.97	0	233537..234034	-	165	197284107	folK	PMI0197	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase
193	 43.18	0	234027..235367	-	446	197284108	pcnB	PMI0198	-	poly(A) polymerase
194	 36.06	0	235698..236027	-	109	197284109	-	PMI0199	-	hypothetical protein
195	 45.61	+1	236089..236544	-	151	197284110	dksA	PMI0200	-	DnaK suppressor protein
196	 38.96	0	236741..237451	-	236	197284111	sfsA	PMI0202	-	sugar fermentation stimulation protein
197	 42.47	0	237537..239966	+	809	197284112	hrpB	PMI0203	-	ATP-dependent RNA helicase
198	 42.41	0	240095..242407	+	770	197284113	mrcB	PMI0204	-	penicillin-binding protein
199	 44.44	0	242510..243796	-	428	197284114	hemL	PMI0205	-	glutamate-1-semialdehyde 2,1-aminomutase
200	 41.74	0	244074..244418	+	114	197284115	-	PMI0206	-	iron-sulphur protein
201	 41.81	0	245183..245701	+	172	197284116	hcp	PMI0207	-	conserved hypothetical protein (hemolysin co-regulated protein)
202	 37.52	0	245814..247940	+	708	197284117	-	PMI0208	-	VgrG-like protein
203	 26.34	-2	247940..248740	+	266	197284118	-	PMI0209	-	hypothetical protein
204	 29.48	-2	248741..250660	+	639	197284119	-	PMI0210	-	lipase
205	 31.19	-1	250641..251435	+	264	197284120	-	PMI0211	-	lipoprotein
206	 30.44	-1	251619..252413	+	264	197284121	-	PMI0212	-	lipoprotein
207	 40.07	0	252452..253282	-	276	197284122	-	PMI0213	-	periplasmic binding protein
208	 41.24	0	253382..254089	-	235	197284123	mtnN	PMI0214	-	MTA/SAH nucleosidase (5'-methylthioadenosine nucleosidase) (s-adenosylhomocysteine nucleosidase)
209	 35.59	0	254209..255717	+	502	197284124	dgt	PMI0215	-	deoxyguanosinetriphosphate triphosphohydrolase
210	 41.86	0	256105..257430	+	441	197284125	rumA	PMI0216	-	23S rRNA (uracil-5-)-methyltransferase
211	 41.37	0	257486..259726	+	746	197284126	relA	PMI0217	-	GTP pyrophosphokinase
212	 39.35	0	259837..260634	+	265	197284127	mazG	PMI0218	-	nucleotide pyrophosphohydrolase
213	 30.09	-1	260773..260988	+	71	197284128	-	PMI0219	-	hypothetical protein
214	 42.31	0	261146..262783	+	545	197284129	pyrG	PMI0220	-	CTP synthase
215	 41.86	0	262848..264149	+	433	197284130	eno	PMI0221	-	enolase
216	 40.42	0	264470..265852	+	460	197284131	-	PMI0222	-	Sodium:sulfate symporter-family protein
217	 34.80	0	266036..267673	+	545	197284132	-	PMI0223	-	alpha-keto acid decarboxylase
218	 39.85	0	267762..269096	-	444	197284133	mltD	PMI0224	-	membrane-bound lytic murein transglycosylase D precursor
219	 35.19	0	269170..269925	-	251	197284134	gloB	PMI0225	-	hydroxyacylglutathione hydrolase
220	 39.62	0	270041..270676	+	211	197284135	-	PMI0226	-	hypothetical protein
221	 42.50	0	270701..271180	-	159	197284136	rnhA	PMI0227	-	ribonuclease HI
222	 41.24	0	271246..272004	+	252	197284137	dnaQ	PMI0228	-	DNA polymerase III, epsilon subunit
223	 43.03	0	272591..273673	+	360	197284138	-	PMI0229	-	ABC transporter, permease protein (FecCD transport family)
224	 41.26	0	273673..274467	+	264	197284139	-	PMI0230	-	ABC transporter, ATP-binding subunit
225	 37.16	0	274538..275374	-	278	197284140	-	PMI0231	-	citrate lyase beta chain
226	 41.99	0	275588..277471	+	627	197284141	-	PMI0232	-	siderophore biosynthesis protein
227	 42.52	0	277482..279593	+	703	197284142	-	PMI0233	-	TonB-dependent siderophore receptor
228	 41.38	0	279605..281008	+	467	197284143	-	PMI0234	-	decarboxylase
229	 44.15	0	281020..282036	+	338	197284144	-	PMI0235	-	pyridoxal-phosphate dependent enzyme
230	 43.35	0	282033..283190	+	385	197284145	-	PMI0236	-	octopine/opine/tauropine dehydrogenase
231	 44.39	0	283192..284403	+	403	197284146	-	PMI0237	-	MFS-family transporter
232	 42.64	0	284414..285541	+	375	197284147	-	PMI0238	-	substrate-binding protein
233	 39.37	0	285544..285990	+	148	197284148	-	PMI0239	-	hypothetical protein
234	 42.61	0	286327..288321	+	664	197284149	tktA	PMI0240	-	transketolase
235	 40.49	0	288580..289599	+	339	197284150	epd	PMI0241	-	D-erythrose 4-phosphate dehydrogenase
236	 41.84	0	289702..290865	+	387	197284151	pgk	PMI0242	-	phosphoglycerate kinase
237	 39.17	0	290930..292009	+	359	197284152	fbaA	PMI0243	-	fructose-bisphosphate aldolase class II
238	 33.33	-1	292101..292313	-	70	197284153	-	PMI0244	-	hypothetical protein
239	 39.01	0	292575..294053	-	492	197284154	-	PMI0245	-	MFS-family transporter
240	 41.04	0	294677..295195	-	172	197284155	hpaC	PMI0246	-	4-hydroxyphenylacetate 3-monooxygenase, reductase component
241	 37.56	0	295282..295494	+	70	197284156	-	PMI0247	-	hypothetical protein
242	 37.44	0	295772..296209	+	145	197284157	hpcR	PMI0248	-	homoprotocatechuate degradative operon repressor (MarR family transcriptional regulator)
243	 41.52	0	296280..298283	-	667	197284158	betU	PMI0249	-	secondary glycine betaine transporter
244	 37.24	0	298652..299317	-	221	197284159	-	PMI0250	-	lipoprotein
245	 32.89	-1	299567..300241	+	224	197284160	-	PMI0251	-	hypothetical protein
246	 39.98	0	300324..301241	-	305	197284161	rnz	PMI0252	-	ribonuclease Z
247	 17.09	-2	301428..301544	+	38	197284162	-	PMI0253	-	hypothetical protein
248	 39.39	0	302482..303009	+	175	197284163	-	PMI0254	-	fimbrial protein
249	 39.73	0	303249..305876	+	875	197284164	-	PMI0255	-	fimbrial outer membrane usher protein
250	 38.38	0	306695..307249	+	184	197284165	-	PMI0257	-	fimbrial protein
251	 37.38	0	307263..307781	+	172	197284166	-	PMI0258	-	minor fimbrial subunit
252	 37.80	0	307792..308328	+	178	197284167	-	PMI0259	-	fimbrial protein
253	 39.58	0	308347..309195	+	282	197284168	-	PMI0260	-	fimbrial adhesin
254	 39.25	0	309216..309536	+	106	197284169	-	PMI0261	-	fimbrial operon regulator
255	 36.86	0	310101..310667	-	188	197284170	mrpI	PMI0262	-	fimbriae recombinase
256	 38.64	0	311346..311873	+	175	197284171	mrpA	PMI0263	-	major mannose-resistant/Proteus-like fimbrial protein
257	 45.45	+1	311959..312519	+	186	197284172	mrpB	PMI0264	-	fimbrial subunit
258	 41.13	0	312542..315157	+	871	197284173	mrpC	PMI0265	-	fimbrial outer membrane usher protein
259	 40.05	0	315213..315971	+	252	197284174	mrpD	PMI0266	-	fimbrial chaperone protein
260	 41.21	0	315985..316530	+	181	197284175	mrpE	PMI0267	-	fimbrial subunit
261	 38.07	0	316543..317028	+	161	197284176	mrpF	PMI0268	-	fimbrial subunit
262	 39.53	0	317039..317587	+	182	197284177	mrpG	PMI0269	-	fimbrial subunit
263	 41.79	0	317609..318436	+	275	197284178	mrpH	PMI0270	-	fimbrial adhesin
264	 33.64	-1	318461..318781	+	106	197284179	mrpJ	PMI0271	-	fimbrial operon regulator
265	 39.43	0	319405..320979	+	524	197284180	mtrF	PMI0272	-	efflux pump component
266	 37.50	0	321019..321402	-	127	197284181	-	PMI0273	-	hypothetical protein
267	 42.48	0	321534..321872	+	112	197284182	-	PMI0274	-	hypothetical protein
268	 35.58	0	322226..323872	+	548	197284183	arnT	PMI0275	-	undecaprenyl phosphate-alpha-4-amino-4-deoxy-l-arabinose arabinosyl transferase
269	 33.63	-1	324361..325713	-	450	197284184	zapD	PMI0276	-	type I secretion outer membrane protein
270	 32.96	-1	325713..327038	-	441	197284185	zapC	PMI0277	-	type I secretion protein
271	 34.89	0	327055..328794	-	579	197284186	zapB	PMI0278	-	Type I secretion ATP-binding protein
272	 34.55	-1	328957..330432	-	491	197284187	zapA	PMI0279	-	metalloprotease
273	 29.12	-2	331042..333105	-	687	197284188	zapE	PMI0281	-	metalloprotease
274	 30.74	-1	333336..335300	-	654	197284189	-	PMI0282	-	metalloprotease
275	 32.11	-1	335607..337571	-	654	197284190	-	PMI0283	-	metalloprotease
276	 22.54	-2	337728..338144	+	138	197284191	-	PMI0284	-	hypothetical protein
277	 33.08	-1	338218..340167	-	649	197284192	-	PMI0285	-	metalloprotease
278	 34.01	-1	340636..341520	+	294	197284193	-	PMI0286	-	transcriptional regulator
279	 39.70	0	341514..342770	-	418	197284194	-	PMI0287	-	amidohydrolase/metallopeptidase
280	 33.55	-1	343139..344524	-	461	197284195	rafY	PMI0288	-	glycoporin
281	 32.87	-1	344579..345223	-	214	197284196	pgmB	PMI0289	-	beta-phosphoglucomutase
282	 36.31	0	345216..347933	-	905	197284197	-	PMI0290	-	glycosyl hydrolase
283	 37.13	0	347959..349380	-	473	197284198	treB	PMI0291	-	trehalose-specific PTS system, EIIBC component
284	 29.17	-2	349391..349486	-	31	197284199	-	PMI0292	-	hypothetical protein
285	 34.98	0	349499..350467	-	322	197284200	treR	PMI0293	-	trehalose operon repressor (LacI-family transcriptional regulator)
286	 27.15	-2	350630..351082	-	150	197284201	-	PMI0294	-	hypothetical protein
287	 21.21	-2	351079..351903	-	274	197284202	-	PMI0295	-	hypothetical protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.