IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2268	 37.65	0	2549655..2550140	-	161	197286183	folA	PMI2337	-	dihydrofolate reductase
2269	 47.23	+1	2550554..2551762	-	402	197286184	-	PMI2338	-	transposase
2270	 42.38	0	2551785..2552204	+	139	197286185	-	PMI2339	-	transposase
2271	 22.78	-2	2552268..2553461	-	397	197286186	-	PMI2340	-	hypothetical protein
2272	 39.78	0	2553568..2556822	-	1084	197286187	-	PMI2341	-	autotransporter (serine protease)
2273	 42.55	0	2557281..2558702	-	473	197286188	sufI	PMI2342	-	multicopper oxidase (suppressor of ftsI)
2274	 39.07	0	2559057..2559806	-	249	197286189	plsC	PMI2343	-	1-acyl-glycerol-3-phosphate acyltransferase
2275	 41.21	0	2559871..2562828	-	985	197286190	parC	PMI2344	-	DNA topoisomerase IV subunit A
2276	 42.77	0	2562862..2564757	-	631	197286191	parE	PMI2345	-	DNA topoisomerase IV subunit B
2277	 39.42	0	2564865..2565455	-	196	197286192	-	PMI2346	-	hypothetical protein
2278	 40.12	0	2565459..2566298	-	279	197286193	icc	PMI2347	-	cyclic 3',5'-adenosine monophosphate phosphodiesterase
2279	 43.02	0	2566530..2567159	-	209	197286194	nudF	PMI2348	-	ADP-ribose pyrophosphatase
2280	 40.20	0	2567373..2568770	+	465	197286195	tolC	PMI2349	-	outer membrane protein TolC precursor
2281	 47.60	+1	2569099..2569827	+	242	197286196	-	PMI2350	-	lipoprotein
2282	 40.89	0	2569835..2570998	+	387	197286197	-	PMI2351	-	glutathionylspermidine synthase
2283	 37.91	0	2571138..2571923	-	261	197286198	-	PMI2352	-	aromatic ring-opening dioxygenase
2284	 46.02	+1	2572099..2572752	-	217	197286199	ribB	PMI2353	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2285	 38.10	0	2573238..2573552	+	104	197286200	-	PMI2354	-	hypothetical protein
2286	 24.77	-2	2573613..2574920	-	435	197286201	-	PMI2355	-	hypothetical protein
2287	 21.07	-2	2574920..2575873	-	317	197286202	-	PMI2356	-	reverse transcriptase
2288	 36.41	0	2575851..2576045	-	64	197286203	-	PMI2357	-	hypothetical protein
2289	 44.07	0	2576084..2577508	-	474	197286204	rfaE	PMI2358	-	bifunctional protein HldE [includes: D-beta-D-heptose 7-phosphate kinase and D-beta-D-heptose 1-phosphate adenosyltransferase]
2290	 41.41	0	2577609..2580443	-	944	197286205	glnE	PMI2359	-	glutamate-ammonia-ligase adenylyltransferase
2291	 41.99	0	2580468..2581391	-	307	197286206	-	PMI2360	-	adenylate cyclase-like protein
2292	 40.74	0	2581611..2582231	+	206	197286207	-	PMI2361	-	hypothetical protein
2293	 45.02	+1	2582259..2583482	+	407	197286208	cca	PMI2362	-	multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase and 2',3'-cyclic phosphodiesterase]
2294	 40.74	0	2583502..2583852	-	116	197286209	folB	PMI2363	-	dihydroneopterin aldolase
2295	 44.29	0	2583957..2584613	+	218	197286210	-	PMI2364	-	hypothetical protein
2296	 34.91	0	2584983..2585681	+	232	197286211	-	PMI2365	-	demethylmenaquinone methyltransferase
2297	 30.29	-1	2585701..2586225	+	174	197286212	-	PMI2366	-	hypothetical protein
2298	 35.09	0	2586296..2586694	+	132	197286213	-	PMI2367	-	hypothetical protein
2299	 37.88	0	2586754..2588160	+	468	197286214	aroH	PMI2368	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2300	 46.63	+1	2588230..2589252	-	340	197286215	gcp	PMI2369	-	O-sialoglycoprotein endopeptidase
2301	 44.44	0	2589595..2589810	+	71	197286216	rpsU	PMI2370	-	30S ribosomal subunit protein S21
2302	 41.22	0	2589924..2591672	+	582	197286217	dnaG	PMI2371	-	DNA primase
2303	 42.81	0	2591863..2593719	+	618	197286218	rpoD	PMI2372	-	RNA polymerase sigma-70 factor
2304	 32.28	-1	2594655..2595410	+	251	197286219	-	PMI2373	-	DNA-binding protein
2305	 34.10	-1	2595666..2596583	+	305	197286220	-	PMI2374	-	hypothetical protein
2306	 30.00	-1	2596665..2596844	-	59	197286221	-	PMI2375	-	hypothetical protein
2307	 38.49	0	2596822..2597829	-	335	197286222	-	PMI2376	-	cytochrome bd ubiquinol oxidase subunit II
2308	 39.25	0	2597829..2599181	-	450	197286223	-	PMI2377	-	cytochrome bd ubiquinol oxidase, subunit I
2309	 41.16	0	2599844..2602129	+	761	197286224	cbbbC	PMI2378	-	probable molybdopterin-containing oxidoreductase
2310	 37.89	0	2602202..2603101	-	299	197286225	-	PMI2379	-	LysR-family transcriptional regulator
2311	 38.03	0	2603326..2604858	-	510	197286226	-	PMI2380	-	methyl-accepting chemotaxis protein
2312	 34.48	-1	2605002..2606570	-	522	197286227	-	PMI2381	-	methyl-accepting chemotaxis protein
2313	 38.62	0	2606971..2607651	+	226	197286228	-	PMI2382	-	phosphotransferase/phosphoserine phosphatase
2314	 42.19	0	2607748..2608323	-	191	197286229	terE	PMI2383	-	tellurite resistance protein
2315	 42.66	0	2608400..2608978	-	192	197286230	terD	PMI2384	-	tellurite resistance protein
2316	 41.33	0	2609046..2610071	-	341	197286231	terC	PMI2385	-	tellurite resistance protein
2317	 40.13	0	2610106..2610561	-	151	197286232	terB	PMI2386	-	tellurite resistance protein
2318	 41.38	0	2610586..2611728	-	380	197286233	terA	PMI2387	-	tellurite resistance protein
2319	 39.83	0	2611729..2612313	-	194	197286234	terZ	PMI2388	-	tellurite resistance protein
2320	 40.58	0	2612706..2613851	+	381	197286235	-	PMI2389	-	hypothetical protein
2321	 39.17	0	2613844..2614614	+	256	197286236	-	PMI2390	-	hypothetical protein
2322	 41.04	0	2614617..2615693	+	358	197286237	-	PMI2391	-	hypothetical protein
2323	 39.79	0	2615693..2616637	+	314	197286238	-	PMI2392	-	ATP/GTP-binding protein
2324	 35.04	0	2616912..2617379	+	155	197286239	terW	PMI2393	-	tellurium resistance protein
2325	 34.56	-1	2617514..2617921	-	135	197286240	-	PMI2394	-	TonB-like protein
2326	 39.36	0	2618018..2618731	-	237	197286241	-	PMI2395	-	NUDIX-family hydrolase
2327	 39.63	0	2618884..2619900	+	338	197286242	-	PMI2396	-	hypothetical protein
2328	 38.41	0	2619904..2620848	+	314	197286243	-	PMI2397	-	hypothetical protein
2329	 37.82	0	2620845..2621468	-	207	197286244	tetRJ	PMI2398	-	tetracycline repressor protein
2330	 38.76	0	2621559..2622755	+	398	197286245	tetAJ	PMI2399	-	tetracycline resistance protein (MFS-family transporter)
2331	 42.16	0	2623022..2623327	-	101	197286246	-	PMI2400	-	phage lysis protein (holin)
2332	 38.31	0	2623819..2624079	+	86	197286247	-	PMI2401	-	hypothetical protein
2333	 42.72	0	2624374..2625438	+	354	197286248	dhaK	PMI2402	-	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit
2334	 41.23	0	2625471..2626103	+	210	197286249	dhaL	PMI2403	-	PTS-dependent dihydroxyacetone kinase, ADP-binding subunit
2335	 40.92	0	2626135..2627583	+	482	197286250	dhaM	PMI2404	-	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit [includes: phosphocarrier protein Hpr and phosphotransferase enzyme IIa component]
2336	 40.92	0	2627627..2628904	-	425	197286251	pgtA	PMI2405	-	phosphoglycerate transport system transcriptional regulator
2337	 37.61	0	2628882..2631245	-	787	197286252	pgtB	PMI2406	-	phosphoglycerate transport system sensor kinase
2338	 39.39	0	2631315..2632601	-	428	197286253	pgtC	PMI2407	-	phosphoglycerate transport system, substrate-binding/regulatory protein
2339	 45.14	+1	2632914..2634251	+	445	197286254	-	PMI2408	-	MFS-family transporter
2340	 43.11	0	2634314..2635765	+	483	197286255	-	PMI2409	-	pyruvate kinase
2341	 41.57	0	2635986..2636252	+	88	197286256	-	PMI2410	-	zinc-finger
2342	 37.65	0	2636339..2638075	-	578	197286257	-	PMI2411	-	pyridoxal-dependent decarboxylase
2343	 40.11	0	2638876..2640189	-	437	197286258	-	PMI2412	-	Mg(2+)/citrate complex transporter
2344	 39.75	0	2640434..2641150	-	238	197286259	deoD	PMI2413	-	purine nucleoside phosphorylase
2345	 41.56	0	2641229..2642455	-	408	197286260	deoB	PMI2414	-	phosphopentomutase
2346	 42.25	0	2642522..2643844	-	440	197286261	deoA	PMI2415	-	thymidine phosphorylase
2347	 42.44	0	2643914..2644693	-	259	197286262	deoC	PMI2416	-	deoxyribose-phosphate aldolase
2348	 48.85	+1	2644690..2644863	-	57	197286263	-	PMI2417	-	hypothetical protein
2349	 42.70	0	2645217..2646518	-	433	197286264	-	PMI2418	-	Na+ dependent nucleoside transporter
2350	 41.12	0	2646806..2647588	-	260	197286265	-	PMI2419	-	TatD-related deoxyribonuclease
2351	 40.58	0	2647585..2648646	-	353	197286266	-	PMI2420	-	patatin-like phospholipase
2352	 34.77	-1	2648743..2649090	-	115	197286267	-	PMI2421	-	phospholipid-binding protein
2353	 41.51	0	2649499..2651088	-	529	197286268	prfC	PMI2422	-	peptide chain release factor 3
2354	 48.30	+1	2651345..2651992	-	215	197286269	-	PMI2423	-	phage repressor
2355	 49.60	+2	2652110..2652361	+	83	197286270	-	PMI2424	-	phage regulatory protein
2356	 46.55	+1	2652417..2653286	+	289	197286271	-	PMI2425	-	hypothetical protein
2357	 47.45	+1	2653327..2653935	+	202	197286272	-	PMI2426	-	hypothetical protein
2358	 48.45	+1	2653922..2654470	+	182	197286273	-	PMI2427	-	phage transglycosylase
2359	 47.00	+1	2654467..2654766	+	99	197286274	-	PMI2428	-	hypothetical protein
2360	 44.19	0	2654763..2655296	+	177	197286275	-	PMI2429	-	phage regulatory protein
2361	 40.05	0	2655354..2655785	+	143	197286276	-	PMI2430	-	phage membrane protein
2362	 48.49	+1	2655818..2659387	-	1189	197286277	-	PMI2431	-	pilus assembly protein
2363	 47.08	+1	2659391..2660779	-	462	197286278	-	PMI2432	-	pilus assembly protein
2364	 48.36	+1	2660782..2661726	-	314	197286279	-	PMI2433	-	pilus assembly
2365	 41.63	0	2662014..2663906	-	630	197286280	-	PMI2434	-	plasmid-related helicase
2366	 47.12	+1	2663903..2665867	-	654	197286281	-	PMI2435	-	plasmid-related protein
2367	 44.78	+1	2666041..2666241	-	66	197286282	-	PMI2436	-	plasmid-related protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.