IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2197	 32.95	-1	2461997..2462257	+	86	197286112	rof	PMI2266	-	Rho-binding antiterminator
2198	 40.20	0	2462294..2463619	-	441	197286113	tilS	PMI2267	-	tRNA(Ile)-lysidine synthase
2199	 40.19	0	2463794..2464537	-	247	197286114	-	PMI2268	-	short chain dehydrogenase
2200	 41.46	0	2464834..2465793	-	319	197286115	accA	PMI2269	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
2201	 43.41	0	2465806..2469288	-	1160	197286116	dnaE	PMI2270	-	DNA polymerase III, alpha chain
2202	 43.15	0	2469311..2469901	-	196	197286117	rnhB	PMI2271	-	ribonuclease HII
2203	 42.37	0	2469901..2471073	-	390	197286118	lpxB	PMI2272	-	lipid-A-disaccharide synthase
2204	 40.55	0	2471081..2471884	-	267	197286119	lpxA	PMI2273	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase
2205	 43.49	0	2471888..2472340	-	150	197286120	fabZ	PMI2274	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
2206	 42.66	0	2472467..2473495	-	342	197286121	lpxD	PMI2275	-	UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2207	 39.76	0	2473499..2473996	-	165	197286122	ompH	PMI2276	-	outer membrane protein
2208	 41.05	0	2474089..2476497	-	802	197286123	yaeT	PMI2277	-	outer membrane protein assembly factor
2209	 42.50	0	2476538..2477890	-	450	197286124	ecfE	PMI2278	-	protease
2210	 42.82	0	2477900..2478763	-	287	197286125	cdsA	PMI2279	-	phosphatidate cytidylyltransferase
2211	 40.18	0	2478765..2479523	-	252	197286126	uppS	PMI2280	-	undecaprenyl pyrophosphate synthetase
2212	 41.37	0	2479749..2480942	-	397	197286127	dxr	PMI2281	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2213	 39.07	0	2481133..2481690	-	185	197286128	frr	PMI2282	-	ribosome recycling factor
2214	 44.86	+1	2481807..2482535	-	242	197286129	pyrH	PMI2283	-	uridylate kinase
2215	 44.37	0	2482671..2483522	-	283	197286130	tsf	PMI2284	-	elongation factor Ts
2216	 43.11	0	2483658..2484383	-	241	197286131	rpsB	PMI2285	-	30S ribosomal protein S2
2217	 40.73	0	2484902..2485699	+	265	197286132	map2	PMI2286	-	methionine aminopeptidase
2218	 40.59	0	2485854..2488499	+	881	197286133	glnD	PMI2287	-	[protein-PII] uridylyltransferase
2219	 40.61	0	2488534..2489358	+	274	197286134	dapD	PMI2288	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
2220	 32.30	-1	2489428..2489814	+	128	197286135	-	PMI2289	-	hypothetical protein
2221	 38.06	0	2489934..2490377	-	147	197286136	-	PMI2290	-	flavodoxin
2222	 22.33	-2	2490449..2491939	-	496	197286137	-	PMI2291	-	hypothetical protein
2223	 41.27	0	2492061..2493509	-	482	197286138	ptsG	PMI2292	-	glucose-specific PTS system, EIIBC component
2224	 42.44	0	2493792..2494571	-	259	197286139	truC	PMI2293	-	tRNA pseudouridine synthase C
2225	 40.12	0	2494580..2494903	-	107	197286140	-	PMI2294	-	hypothetical protein
2226	 36.43	0	2495377..2495925	-	182	197286141	syd	PMI2295	-	SecY-interacting protein
2227	 39.36	0	2496089..2496934	+	281	197286142	queF	PMI2296	-	NADPH-dependent 7-cyano-7-deazaguanine reductase
2228	 42.32	0	2497026..2498393	+	455	197286143	-	PMI2297	-	amino acid decarboxylase
2229	 41.87	0	2498400..2499149	+	249	197286144	xni	PMI2298	-	exodeoxyribonuclease IX
2230	 40.53	0	2499238..2500335	-	365	197286145	-	PMI2299	-	hypothetical protein
2231	 38.13	0	2500328..2500723	-	131	197286146	-	PMI2300	-	hypothetical protein
2232	 39.96	0	2500767..2501687	-	306	197286147	gcvA	PMI2301	-	glycine cleavage system transcriptional activator (LysR-family transcriptional regulator)
2233	 43.21	0	2502339..2503553	+	404	197286148	csdA	PMI2302	-	cysteine sulfinate desulfinase
2234	 35.81	0	2503556..2503999	+	147	197286149	-	PMI2303	-	cysteine desulfuration protein
2235	 42.64	0	2504070..2504918	-	282	197286150	-	PMI2304	-	hypothetical protein
2236	 40.37	0	2505027..2506121	-	364	197286151	mltA	PMI2305	-	membrane-bound lytic murein transglycosylase
2237	 42.36	0	2506876..2508138	-	420	197286152	amiC	PMI2306	-	N-acetylmuramoyl-L-alanine amidase AmiC precursor
2238	 41.27	0	2508383..2509717	+	444	197286153	argA	PMI2307	-	amino-acid acetyltransferase
2239	 42.31	0	2509816..2511732	-	638	197286154	recD	PMI2308	-	exodeoxyribonuclease V alpha chain
2240	 41.33	0	2511725..2515363	-	1212	197286155	recB	PMI2309	-	exodeoxyribonuclease V beta chain
2241	 38.35	0	2515360..2518248	-	962	197286156	ptrA	PMI2310	-	protease III precursor
2242	 39.85	0	2518264..2521641	-	1125	197286157	recC	PMI2311	-	exodeoxyribonuclease V gamma chain
2243	 37.19	0	2521657..2521941	-	94	197286158	-	PMI2312	-	hypothetical protein
2244	 40.09	0	2521982..2522440	-	152	197286159	-	PMI2313	-	hypothetical protein
2245	 34.74	-1	2522437..2523075	-	212	197286160	ppdB	PMI2314	-	prepilin peptidase dependent protein B precursor
2246	 38.33	0	2523069..2523548	-	159	197286161	ppdA	PMI2315	-	prepilin peptidase dependent protein A precursor
2247	 40.97	0	2523778..2524707	-	309	197286162	-	PMI2316	-	hypothetical protein
2248	 42.13	0	2524700..2525233	-	177	197286163	-	PMI2317	-	hypothetical protein
2249	 40.38	0	2525410..2526261	-	283	197286164	thyA	PMI2318	-	thymidylate synthase
2250	 42.26	0	2526293..2527177	-	294	197286165	lgt	PMI2319	-	prolipoprotein diacylglyceryl transferase
2251	 41.92	0	2527264..2529510	-	748	197286166	ptsP	PMI2320	-	phosphoenolpyruvate-protein phosphotransferase
2252	 44.63	+1	2529519..2530049	-	176	197286167	nudH	PMI2321	-	(di)nucleoside polyphosphate hydrolase
2253	 41.42	0	2530319..2531332	+	337	197286168	thiB	PMI2322	-	thiamine ABC transporter, substrate-binding protein
2254	 41.62	0	2531332..2532912	+	526	197286169	thiP	PMI2323	-	thiamine ABC transporter, permease protein
2255	 41.17	0	2532905..2533606	+	233	197286170	thiQ	PMI2324	-	thiamine ABC transporter, ATP-binding protein
2256	 36.64	0	2533734..2534186	+	150	197286171	-	PMI2325	-	POSSIBLE EXCISIONASE
2257	 36.14	0	2534186..2534755	+	189	197286172	-	PMI2326	-	hypothetical protein
2258	 41.36	0	2534871..2537225	+	784	197286173	polB	PMI2327	-	DNA polymerase II
2259	 42.11	0	2537417..2540320	+	967	197286174	rapA	PMI2328	-	RNA polymerase-associated protein
2260	 43.63	0	2540382..2541032	+	216	197286175	rluA	PMI2329	-	ribosomal large subunit pseudouridine synthase A
2261	 40.95	0	2541277..2542077	-	266	197286176	djlA	PMI2330	-	DnaJ-like chaperone protein
2262	 41.32	0	2542503..2544869	+	788	197286177	imp	PMI2331	-	organic solvent tolerance protein
2263	 41.57	0	2544944..2546254	+	436	197286178	surA	PMI2332	-	chaperone SurA protein (peptidyl-prolyl cis-trans isomerase)
2264	 45.31	+1	2546244..2547245	+	333	197286179	pdxA	PMI2333	-	4-hydroxythreonine-4-phosphate dehydrogenase
2265	 42.49	0	2547238..2548056	+	272	197286180	ksgA	PMI2334	-	dimethyladenosine transferase
2266	 43.39	0	2548086..2548463	+	125	197286181	apaG	PMI2335	-	hypothetical protein
2267	 41.12	0	2548466..2549287	+	273	197286182	apaH	PMI2336	-	bis(5'-nucleosyl)-tetraphosphatase
2268	 37.65	0	2549655..2550140	-	161	197286183	folA	PMI2337	-	dihydrofolate reductase
2269	 47.23	+1	2550554..2551762	-	402	197286184	-	PMI2338	-	transposase
2270	 42.38	0	2551785..2552204	+	139	197286185	-	PMI2339	-	transposase
2271	 22.78	-2	2552268..2553461	-	397	197286186	-	PMI2340	-	hypothetical protein
2272	 39.78	0	2553568..2556822	-	1084	197286187	-	PMI2341	-	autotransporter (serine protease)
2273	 42.55	0	2557281..2558702	-	473	197286188	sufI	PMI2342	-	multicopper oxidase (suppressor of ftsI)
2274	 39.07	0	2559057..2559806	-	249	197286189	plsC	PMI2343	-	1-acyl-glycerol-3-phosphate acyltransferase
2275	 41.21	0	2559871..2562828	-	985	197286190	parC	PMI2344	-	DNA topoisomerase IV subunit A
2276	 42.77	0	2562862..2564757	-	631	197286191	parE	PMI2345	-	DNA topoisomerase IV subunit B
2277	 39.42	0	2564865..2565455	-	196	197286192	-	PMI2346	-	hypothetical protein
2278	 40.12	0	2565459..2566298	-	279	197286193	icc	PMI2347	-	cyclic 3',5'-adenosine monophosphate phosphodiesterase
2279	 43.02	0	2566530..2567159	-	209	197286194	nudF	PMI2348	-	ADP-ribose pyrophosphatase
2280	 40.20	0	2567373..2568770	+	465	197286195	tolC	PMI2349	-	outer membrane protein TolC precursor
2281	 47.60	+1	2569099..2569827	+	242	197286196	-	PMI2350	-	lipoprotein
2282	 40.89	0	2569835..2570998	+	387	197286197	-	PMI2351	-	glutathionylspermidine synthase
2283	 37.91	0	2571138..2571923	-	261	197286198	-	PMI2352	-	aromatic ring-opening dioxygenase
2284	 46.02	+1	2572099..2572752	-	217	197286199	ribB	PMI2353	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2285	 38.10	0	2573238..2573552	+	104	197286200	-	PMI2354	-	hypothetical protein
2286	 24.77	-2	2573613..2574920	-	435	197286201	-	PMI2355	-	hypothetical protein
2287	 21.07	-2	2574920..2575873	-	317	197286202	-	PMI2356	-	reverse transcriptase
2288	 36.41	0	2575851..2576045	-	64	197286203	-	PMI2357	-	hypothetical protein
2289	 44.07	0	2576084..2577508	-	474	197286204	rfaE	PMI2358	-	bifunctional protein HldE [includes: D-beta-D-heptose 7-phosphate kinase and D-beta-D-heptose 1-phosphate adenosyltransferase]
2290	 41.41	0	2577609..2580443	-	944	197286205	glnE	PMI2359	-	glutamate-ammonia-ligase adenylyltransferase
2291	 41.99	0	2580468..2581391	-	307	197286206	-	PMI2360	-	adenylate cyclase-like protein
2292	 40.74	0	2581611..2582231	+	206	197286207	-	PMI2361	-	hypothetical protein
2293	 45.02	+1	2582259..2583482	+	407	197286208	cca	PMI2362	-	multifunctional Cca protein [includes: tRNA nucleotidyltransferase; 2'-nucleotidase and 2',3'-cyclic phosphodiesterase]
2294	 40.74	0	2583502..2583852	-	116	197286209	folB	PMI2363	-	dihydroneopterin aldolase
2295	 44.29	0	2583957..2584613	+	218	197286210	-	PMI2364	-	hypothetical protein
2296	 34.91	0	2584983..2585681	+	232	197286211	-	PMI2365	-	demethylmenaquinone methyltransferase
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.