IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1941	 40.58	0	2145255..2145530	-	91	197285856	-	PMI2005	-	phage Cox regulatory protein
1942	 34.33	-1	2145633..2145932	+	99	197285857	-	PMI2006	-	phage repressor protein C
1943	 37.40	0	2145999..2146982	+	327	197285858	-	PMI2007	-	phage integrase
1944	 40.66	0	2147151..2148665	-	504	197285859	lysS	PMI2008	-	lysyl-tRNA synthetase
1945	 42.31	0	2148674..2149772	-	365	197285860	prfB	PMI2009	-	peptide chain release factor 2
1946	 42.96	0	2149944..2151677	-	577	197285861	recJ	PMI2010	-	single-stranded-DNA-specific exonuclease
1947	 36.02	0	2151687..2152394	-	235	197285862	dsbC	PMI2011	-	thiol:disulfide interchange protein
1948	 42.04	0	2152428..2153369	-	313	197285863	xerD	PMI2012	-	tyrosine recombinase
1949	 37.57	0	2153477..2153995	+	172	197285864	fldB	PMI2013	-	flavodoxin 2
1950	 33.82	-1	2154096..2154503	-	135	197285865	-	PMI2014	-	hypothetical protein
1951	 25.13	-2	2154538..2154732	-	64	197285866	-	PMI2015	-	hypothetical protein
1952	 36.88	0	2154811..2155092	-	93	197285867	-	PMI2016	-	hypothetical protein
1953	 43.06	0	2155347..2156333	+	328	197285868	-	PMI2017	-	aminomethyltransferase
1954	 39.14	0	2156360..2156962	+	200	197285869	-	PMI2018	-	metal dependent phosphohydrolase
1955	 43.31	0	2157060..2159936	-	958	197285870	gcvP	PMI2019	-	glycine dehydrogenase [decarboxylating] (glycine cleavage system P-protein)
1956	 41.22	0	2160045..2160437	-	130	197285871	gcvH	PMI2020	-	glycine cleavage system H protein
1957	 43.01	0	2160470..2161564	-	364	197285872	gcvT	PMI2021	-	aminomethyltransferase (glycine cleavage system T protein)
1958	 42.48	0	2161978..2163213	-	411	197285873	visC	PMI2022	-	monooxygenase
1959	 43.05	0	2163243..2164415	-	390	197285874	ubiH	PMI2023	-	2-octaprenyl-6-methoxyphenol hydroxylase
1960	 40.73	0	2164429..2165739	-	436	197285875	pepP	PMI2024	-	Xaa-proline aminopeptidase
1961	 38.29	0	2165793..2166377	-	194	197285876	-	PMI2025	-	hypothetical protein
1962	 38.79	0	2166554..2166883	+	109	197285877	-	PMI2026	-	hypothetical protein
1963	 40.78	0	2167349..2167966	+	205	197285878	-	PMI2027	-	5-formyltetrahydrofolate cyclo ligase
1964	 31.84	-1	2168056..2170128	+	690	197285879	-	PMI2028	-	toxin transporter
1965	 30.70	-1	2170131..2171495	+	454	197285880	-	PMI2029	-	HlyD-family toxin secretion protein
1966	 33.38	-1	2171509..2173632	+	707	197285881	-	PMI2030	-	toxin transporter
1967	 40.85	0	2173709..2174959	-	416	197285882	serA	PMI2031	-	D-3-phosphoglycerate dehydrogenase
1968	 42.16	0	2175317..2175973	-	218	197285883	rpiA	PMI2032	-	ribose 5-phosphate isomerase A
1969	 44.44	0	2176134..2177033	+	299	197285884	iciA	PMI2033	-	chromosome initiation inhibitor (LysR-family transcriptional regulator)
1970	 42.79	0	2177236..2177457	+	73	197285885	-	PMI2034	-	hypothetical protein
1971	 34.59	-1	2177477..2177953	+	158	197285886	-	PMI2035	-	hypothetical protein
1972	 39.86	0	2178121..2178855	-	244	197285887	-	PMI2036	-	hypothetical protein
1973	 39.58	0	2178946..2179569	-	207	197285888	argO	PMI2037	-	arginine exporter
1974	 40.53	0	2179738..2180598	-	286	197285889	-	PMI2038	-	mechanosensitive ion channel protein
1975	 36.29	0	2180690..2181061	-	123	197285890	-	PMI2039	-	hypothetical protein
1976	 44.03	0	2181232..2183829	-	865	197285891	acnB	PMI2040	-	aconitate hydratase 2 (citrate hydro-lyase 2)
1977	 37.73	0	2185083..2198945	+	4620	197285892	-	PMI2043	-	toxin
1978	 42.93	0	2199158..2200585	-	475	197285893	lpdA	PMI2044	-	dihydrolipoyl dehydrogenase (glycine cleavage system L protein)
1979	 44.80	+1	2200787..2202652	-	621	197285894	aceF	PMI2045	-	dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
1980	 42.78	0	2202665..2205331	-	888	197285895	aceE	PMI2046	-	pyruvate dehydrogenase E1 component
1981	 43.84	0	2205495..2206265	-	256	197285896	pdhR	PMI2047	-	pyruvate dehydrogenase complex repressor (GntR-family transcriptional regulator)
1982	 42.73	0	2206592..2207134	-	180	197285897	ampD	PMI2048	-	N-acetylmuramoyl-L-alanine amidase
1983	 38.96	0	2207345..2207788	+	147	197285898	ppdD	PMI2049	-	prelipin peptidase dependent protein D
1984	 35.69	0	2207887..2208990	+	367	197285899	hofB	PMI2050	-	protein transport protein
1985	 32.83	-1	2208987..2210186	+	399	197285900	hofC	PMI2051	-	protein transport protein
1986	 37.72	0	2210464..2211078	+	204	197285901	coaE	PMI2052	-	dephospho-CoA kinase
1987	 36.12	0	2211081..2211833	+	250	197285902	-	PMI2053	-	hypothetical protein
1988	 43.06	0	2211886..2212101	+	71	197285903	-	PMI2054	-	hypothetical protein
1989	 37.63	0	2212154..2212549	-	131	197285904	mutT	PMI2055	-	mutator MutT protein (dGTP pyrophosphohydrolase)
1990	 38.02	0	2213247..2214932	+	561	197285905	hpmB	PMI2056	-	hemolysin activator protein (two-partner secretion system accessory protein)
1991	 39.29	0	2214966..2219699	+	1577	197285906	hpmA	PMI2057	-	hemolysin
1992	 37.50	0	2222564..2222971	+	135	197285907	-	PMI2060	-	MerR-family transcriptional regulator
1993	 40.57	0	2223118..2225826	-	902	197285908	secA	PMI2061	-	preprotein translocase SecA subunit
1994	 42.42	0	2225934..2226461	-	175	197285909	secM	PMI2062	-	secretion monitor protein
1995	 37.76	0	2226505..2227023	+	172	197285910	-	PMI2063	-	hypothetical protein
1996	 39.76	0	2227054..2227971	-	305	197285911	lpxC	PMI2064	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1997	 45.24	+1	2228070..2229236	-	388	197285912	ftsZ	PMI2065	-	cell division protein
1998	 43.68	0	2229306..2230562	-	418	197285913	ftsA	PMI2066	-	cell division protein
1999	 40.81	0	2230608..2231396	-	262	197285914	ftsQ	PMI2067	-	cell division protein
2000	 30.75	-1	2231408..2231755	-	115	197285915	-	PMI2068	-	hypothetical protein
2001	 42.01	0	2231761..2233224	-	487	197285916	murC	PMI2069	-	UDP-N-acetylmuramate--L-alanine ligase
2002	 44.51	0	2233266..2234348	-	360	197285917	murG	PMI2070	-	UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2003	 43.13	0	2234345..2235538	-	397	197285918	ftsW	PMI2071	-	cell division protein
2004	 43.33	0	2235538..2236848	-	436	197285919	murD	PMI2072	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
2005	 41.46	0	2236850..2237932	-	360	197285920	mraY	PMI2073	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2006	 41.00	0	2237926..2239308	-	460	197285921	murF	PMI2074	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
2007	 44.62	+1	2239305..2240792	-	495	197285922	murE	PMI2075	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
2008	 43.85	0	2240779..2242575	-	598	197285923	ftsI	PMI2076	-	penicillin-binding protein (peptidoglycan synthetase protein)
2009	 40.57	0	2242587..2242904	-	105	197285924	ftsL	PMI2077	-	cell division protein
2010	 42.19	0	2242905..2243852	-	315	197285925	mraW	PMI2078	-	S-adenosyl-methyltransferase
2011	 44.66	+1	2243856..2244314	-	152	197285926	mraZ	PMI2079	-	hypothetical protein
2012	 44.05	0	2245002..2246009	-	335	197285927	fruR	PMI2080	-	fructose repressor (catabolite repressor/activator) (LacI-family transcriptional regulator)
2013	 39.58	0	2246231..2248039	-	602	197285928	-	PMI2081	-	AMP-binding protein
2014	 35.03	0	2248569..2249513	-	314	197285929	leuO	PMI2082	-	LysR-family transcriptional regulator
2015	 26.02	-2	2249712..2249957	+	81	197285930	-	PMI2083	-	hypothetical protein
2016	 40.90	0	2250396..2251955	+	519	197285931	leuA	PMI2084	-	2-isopropylmalate synthase
2017	 42.95	0	2251961..2253052	+	363	197285932	leuB	PMI2085	-	3-isopropylmalate dehydrogenase
2018	 43.19	0	2253054..2254463	+	469	197285933	leuC	PMI2086	-	3-isopropylmalate dehydratase large subunit
2019	 40.30	0	2254475..2255077	+	200	197285934	leuD	PMI2087	-	3-isopropylmalate dehydratase small subunit
2020	 40.89	0	2255359..2257038	+	559	197285935	-	PMI2088	-	solute-binding protein
2021	 44.69	+1	2257641..2258318	+	225	197285936	mutH	PMI2089	-	DNA mismatch repair protein
2022	 37.97	0	2258397..2258741	-	114	197285937	-	PMI2090	-	DNA-binding prophage protein
2023	 35.96	0	2258731..2259072	-	113	197285938	-	PMI2091	-	hypothetical protein
2024	 43.46	0	2259253..2260032	-	259	197285939	budC	PMI2092	-	acetoin(diacetyl) reductase
2025	 42.78	0	2260362..2261282	-	306	197285940	speB	PMI2093	-	Agmatinase
2026	 42.24	0	2261381..2263288	-	635	197285941	speA	PMI2094	-	biosynthetic arginine decarboxylase
2027	 42.60	0	2263980..2265134	+	384	197285942	metK	PMI2095	-	S-adenosylmethionine synthetase
2028	 38.30	0	2265295..2267004	-	569	197285943	-	PMI2096	-	hypothetical protein
2029	 24.48	-2	2267832..2268023	+	63	197285944	-	PMI2097	-	hypothetical protein
2030	 37.70	0	2268032..2268763	+	243	197285945	-	PMI2098	-	hypothetical protein
2031	 39.68	0	2268769..2271366	+	865	197285946	bcsA	PMI2099	-	cellulose synthase catalytic subunit [UDP-forming]
2032	 39.70	0	2271433..2273724	+	763	197285947	bcsB	PMI2100	-	cyclic di-GMP binding protein
2033	 40.26	0	2273728..2277003	+	1091	197285948	bcsC	PMI2101	-	cellulose synthase protein
2034	 42.03	0	2277088..2277501	-	137	197285949	-	PMI2102	-	hypothetical protein
2035	 43.91	0	2277506..2277940	-	144	197285950	-	PMI2103	-	hypothetical protein
2036	 38.58	0	2277944..2278267	-	107	197285951	-	PMI2104	-	ArsR-family transcriptional regulator
2037	 39.84	0	2278372..2278878	+	168	197285952	sprT	PMI2105	-	metallopeptidase
2038	 26.78	-2	2278994..2279176	+	60	197285953	-	PMI2106	-	hypothetical protein
2039	 36.35	0	2279366..2279962	+	198	197285954	-	PMI2107	-	hypothetical protein
2040	 40.63	0	2279953..2280363	+	136	197285955	-	PMI2108	-	hypothetical protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.