IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1912	 46.38	+1	2123794..2124966	-	390	197285827	-	PMI1976	-	probable major tail sheath protein
1913	 45.16	+1	2125066..2126697	-	543	197285828	-	PMI1977	-	phage variable tail fiber protein
1914	 48.69	+1	2126687..2127298	-	203	197285829	-	PMI1978	-	phage tail protein
1915	 48.29	+1	2127291..2128199	-	302	197285830	-	PMI1979	-	phage baseplate assembly protein
1916	 43.95	0	2128201..2128539	-	112	197285831	-	PMI1980	-	phage baseplate assembly protein
1917	 49.44	+1	2128536..2129162	-	208	197285832	-	PMI1981	-	phage baseplate assembly protein
1918	 42.77	0	2129228..2129863	-	211	197285833	-	PMI1982	-	phage tail completion protein S
1919	 42.47	0	2129853..2130290	-	145	197285834	-	PMI1983	-	phage tail completion protein R
1920	 42.46	0	2130265..2130768	-	167	197285835	-	PMI1984	-	phage lysis protein
1921	 40.00	0	2130765..2131169	-	134	197285836	-	PMI1985	-	phage protein
1922	 42.22	0	2131162..2131476	-	104	197285837	-	PMI1986	-	phage holin
1923	 46.86	+1	2131496..2131702	-	68	197285838	-	PMI1987	-	phage tail protein X
1924	 43.42	0	2131702..2132157	-	151	197285839	-	PMI1988	-	phage head completion/stabilization protein
1925	 46.64	+1	2132235..2132903	-	222	197285840	-	PMI1989	-	phage terminase, endonuclease subunit
1926	 43.72	0	2132903..2134048	-	381	197285841	-	PMI1990	-	phage major capsid protein
1927	 45.68	+1	2134064..2134873	-	269	197285842	-	PMI1991	-	phage capsid scaffolding protein
1928	 44.73	+1	2135046..2136800	+	584	197285843	-	PMI1992	-	phage terminase, ATPase subunit
1929	 42.18	0	2136800..2137828	+	342	197285844	-	PMI1993	-	phage portal protein
1930	 36.44	0	2138439..2139566	-	375	197285845	-	PMI1994	-	transcriptional regulator
1931	 35.86	0	2139577..2140170	-	197	197285846	-	PMI1995	-	hypothetical protein
1932	 26.29	-2	2140281..2140493	-	70	197285847	-	PMI1996	-	hypothetical protein
1933	 40.82	0	2140486..2142864	-	792	197285848	-	PMI1997	-	phage replication protein
1934	 42.59	0	2142864..2143187	-	107	197285849	-	PMI1998	-	hypothetical protein
1935	 36.24	0	2143187..2144011	-	274	197285850	-	PMI1999	-	DNA adenine methylase
1936	 42.79	0	2144013..2144234	-	73	197285851	-	PMI2000	-	phage protein
1937	 36.43	0	2144227..2144484	-	85	197285852	-	PMI2001	-	phage protein
1938	 30.05	-1	2144502..2144897	-	131	197285853	-	PMI2002	-	hypothetical protein
1939	 28.00	-2	2144906..2145055	-	49	197285854	-	PMI2003	-	hypothetical protein
1940	 35.86	0	2145052..2145249	-	65	197285855	-	PMI2004	-	hypothetical protein
1941	 40.58	0	2145255..2145530	-	91	197285856	-	PMI2005	-	phage Cox regulatory protein
1942	 34.33	-1	2145633..2145932	+	99	197285857	-	PMI2006	-	phage repressor protein C
1943	 37.40	0	2145999..2146982	+	327	197285858	-	PMI2007	-	phage integrase
1944	 40.66	0	2147151..2148665	-	504	197285859	lysS	PMI2008	-	lysyl-tRNA synthetase
1945	 42.31	0	2148674..2149772	-	365	197285860	prfB	PMI2009	-	peptide chain release factor 2
1946	 42.96	0	2149944..2151677	-	577	197285861	recJ	PMI2010	-	single-stranded-DNA-specific exonuclease
1947	 36.02	0	2151687..2152394	-	235	197285862	dsbC	PMI2011	-	thiol:disulfide interchange protein
1948	 42.04	0	2152428..2153369	-	313	197285863	xerD	PMI2012	-	tyrosine recombinase
1949	 37.57	0	2153477..2153995	+	172	197285864	fldB	PMI2013	-	flavodoxin 2
1950	 33.82	-1	2154096..2154503	-	135	197285865	-	PMI2014	-	hypothetical protein
1951	 25.13	-2	2154538..2154732	-	64	197285866	-	PMI2015	-	hypothetical protein
1952	 36.88	0	2154811..2155092	-	93	197285867	-	PMI2016	-	hypothetical protein
1953	 43.06	0	2155347..2156333	+	328	197285868	-	PMI2017	-	aminomethyltransferase
1954	 39.14	0	2156360..2156962	+	200	197285869	-	PMI2018	-	metal dependent phosphohydrolase
1955	 43.31	0	2157060..2159936	-	958	197285870	gcvP	PMI2019	-	glycine dehydrogenase [decarboxylating] (glycine cleavage system P-protein)
1956	 41.22	0	2160045..2160437	-	130	197285871	gcvH	PMI2020	-	glycine cleavage system H protein
1957	 43.01	0	2160470..2161564	-	364	197285872	gcvT	PMI2021	-	aminomethyltransferase (glycine cleavage system T protein)
1958	 42.48	0	2161978..2163213	-	411	197285873	visC	PMI2022	-	monooxygenase
1959	 43.05	0	2163243..2164415	-	390	197285874	ubiH	PMI2023	-	2-octaprenyl-6-methoxyphenol hydroxylase
1960	 40.73	0	2164429..2165739	-	436	197285875	pepP	PMI2024	-	Xaa-proline aminopeptidase
1961	 38.29	0	2165793..2166377	-	194	197285876	-	PMI2025	-	hypothetical protein
1962	 38.79	0	2166554..2166883	+	109	197285877	-	PMI2026	-	hypothetical protein
1963	 40.78	0	2167349..2167966	+	205	197285878	-	PMI2027	-	5-formyltetrahydrofolate cyclo ligase
1964	 31.84	-1	2168056..2170128	+	690	197285879	-	PMI2028	-	toxin transporter
1965	 30.70	-1	2170131..2171495	+	454	197285880	-	PMI2029	-	HlyD-family toxin secretion protein
1966	 33.38	-1	2171509..2173632	+	707	197285881	-	PMI2030	-	toxin transporter
1967	 40.85	0	2173709..2174959	-	416	197285882	serA	PMI2031	-	D-3-phosphoglycerate dehydrogenase
1968	 42.16	0	2175317..2175973	-	218	197285883	rpiA	PMI2032	-	ribose 5-phosphate isomerase A
1969	 44.44	0	2176134..2177033	+	299	197285884	iciA	PMI2033	-	chromosome initiation inhibitor (LysR-family transcriptional regulator)
1970	 42.79	0	2177236..2177457	+	73	197285885	-	PMI2034	-	hypothetical protein
1971	 34.59	-1	2177477..2177953	+	158	197285886	-	PMI2035	-	hypothetical protein
1972	 39.86	0	2178121..2178855	-	244	197285887	-	PMI2036	-	hypothetical protein
1973	 39.58	0	2178946..2179569	-	207	197285888	argO	PMI2037	-	arginine exporter
1974	 40.53	0	2179738..2180598	-	286	197285889	-	PMI2038	-	mechanosensitive ion channel protein
1975	 36.29	0	2180690..2181061	-	123	197285890	-	PMI2039	-	hypothetical protein
1976	 44.03	0	2181232..2183829	-	865	197285891	acnB	PMI2040	-	aconitate hydratase 2 (citrate hydro-lyase 2)
1977	 37.73	0	2185083..2198945	+	4620	197285892	-	PMI2043	-	toxin
1978	 42.93	0	2199158..2200585	-	475	197285893	lpdA	PMI2044	-	dihydrolipoyl dehydrogenase (glycine cleavage system L protein)
1979	 44.80	+1	2200787..2202652	-	621	197285894	aceF	PMI2045	-	dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
1980	 42.78	0	2202665..2205331	-	888	197285895	aceE	PMI2046	-	pyruvate dehydrogenase E1 component
1981	 43.84	0	2205495..2206265	-	256	197285896	pdhR	PMI2047	-	pyruvate dehydrogenase complex repressor (GntR-family transcriptional regulator)
1982	 42.73	0	2206592..2207134	-	180	197285897	ampD	PMI2048	-	N-acetylmuramoyl-L-alanine amidase
1983	 38.96	0	2207345..2207788	+	147	197285898	ppdD	PMI2049	-	prelipin peptidase dependent protein D
1984	 35.69	0	2207887..2208990	+	367	197285899	hofB	PMI2050	-	protein transport protein
1985	 32.83	-1	2208987..2210186	+	399	197285900	hofC	PMI2051	-	protein transport protein
1986	 37.72	0	2210464..2211078	+	204	197285901	coaE	PMI2052	-	dephospho-CoA kinase
1987	 36.12	0	2211081..2211833	+	250	197285902	-	PMI2053	-	hypothetical protein
1988	 43.06	0	2211886..2212101	+	71	197285903	-	PMI2054	-	hypothetical protein
1989	 37.63	0	2212154..2212549	-	131	197285904	mutT	PMI2055	-	mutator MutT protein (dGTP pyrophosphohydrolase)
1990	 38.02	0	2213247..2214932	+	561	197285905	hpmB	PMI2056	-	hemolysin activator protein (two-partner secretion system accessory protein)
1991	 39.29	0	2214966..2219699	+	1577	197285906	hpmA	PMI2057	-	hemolysin
1992	 37.50	0	2222564..2222971	+	135	197285907	-	PMI2060	-	MerR-family transcriptional regulator
1993	 40.57	0	2223118..2225826	-	902	197285908	secA	PMI2061	-	preprotein translocase SecA subunit
1994	 42.42	0	2225934..2226461	-	175	197285909	secM	PMI2062	-	secretion monitor protein
1995	 37.76	0	2226505..2227023	+	172	197285910	-	PMI2063	-	hypothetical protein
1996	 39.76	0	2227054..2227971	-	305	197285911	lpxC	PMI2064	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1997	 45.24	+1	2228070..2229236	-	388	197285912	ftsZ	PMI2065	-	cell division protein
1998	 43.68	0	2229306..2230562	-	418	197285913	ftsA	PMI2066	-	cell division protein
1999	 40.81	0	2230608..2231396	-	262	197285914	ftsQ	PMI2067	-	cell division protein
2000	 30.75	-1	2231408..2231755	-	115	197285915	-	PMI2068	-	hypothetical protein
2001	 42.01	0	2231761..2233224	-	487	197285916	murC	PMI2069	-	UDP-N-acetylmuramate--L-alanine ligase
2002	 44.51	0	2233266..2234348	-	360	197285917	murG	PMI2070	-	UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2003	 43.13	0	2234345..2235538	-	397	197285918	ftsW	PMI2071	-	cell division protein
2004	 43.33	0	2235538..2236848	-	436	197285919	murD	PMI2072	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
2005	 41.46	0	2236850..2237932	-	360	197285920	mraY	PMI2073	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2006	 41.00	0	2237926..2239308	-	460	197285921	murF	PMI2074	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
2007	 44.62	+1	2239305..2240792	-	495	197285922	murE	PMI2075	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
2008	 43.85	0	2240779..2242575	-	598	197285923	ftsI	PMI2076	-	penicillin-binding protein (peptidoglycan synthetase protein)
2009	 40.57	0	2242587..2242904	-	105	197285924	ftsL	PMI2077	-	cell division protein
2010	 42.19	0	2242905..2243852	-	315	197285925	mraW	PMI2078	-	S-adenosyl-methyltransferase
2011	 44.66	+1	2243856..2244314	-	152	197285926	mraZ	PMI2079	-	hypothetical protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.