IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1881	 39.66	0	2091575..2093614	-	679	197285796	ireA	PMI1945	-	TonB-dependent ferric siderophore receptor
1882	 40.18	0	2093852..2095486	-	544	197285797	sglT	PMI1946	-	sodium/glucose cotransporter
1883	 43.82	0	2095863..2096873	-	336	197285798	galR	PMI1947	-	galactose operon repressor (LacI-family transcriptional regulator)
1884	 41.46	0	2097053..2098123	-	356	197285799	galM	PMI1948	-	aldose 1-epimerase
1885	 40.07	0	2098110..2099282	-	390	197285800	galK	PMI1949	-	galactokinase
1886	 39.57	0	2099394..2100452	-	352	197285801	galT	PMI1950	-	galactose-1-phosphate uridylyltransferase
1887	 42.48	0	2100501..2101517	-	338	197285802	galE	PMI1951	-	UDP-glucose 4-epimerase
1888	 40.94	0	2101949..2102908	+	319	197285803	tkrA	PMI1952	-	2-ketogluconate reductase (2-ketoaldonate reductase)
1889	 39.00	0	2102982..2103899	-	305	197285804	-	PMI1953	-	cation efflux protein
1890	 38.58	0	2104440..2104877	+	145	197285805	-	PMI1954	-	universal stress protein
1891	 37.27	0	2104940..2105422	-	160	197285806	eco	PMI1955	-	ecotin precursor
1892	 33.80	-1	2105684..2105899	+	71	197285807	-	PMI1956	-	hypothetical protein
1893	 39.17	0	2106043..2106282	+	79	197285808	-	PMI1957	-	hypothetical protein
1894	 34.55	-1	2106395..2106640	-	81	197285809	-	PMI1958	-	DNA-damage-inducible protein
1895	 40.23	0	2106825..2107172	+	115	197285810	-	PMI1959	-	hypothetical protein
1896	 39.75	0	2107150..2107710	-	186	197285811	-	PMI1960	-	acetyltransferase
1897	 37.26	0	2107785..2108471	-	228	197285812	ccm	PMI1961	-	membrane protein (Ccm1 protein)
1898	 30.82	-1	2109559..2110395	+	278	197285813	-	PMI1962	-	AraC-family transcriptional regulator
1899	 27.54	-2	2110477..2111322	+	281	197285814	-	PMI1963	-	hypothetical protein
1900	 35.68	0	2111380..2113848	-	822	197285815	-	PMI1964	-	exported FKBP-type peptidyl-prolyl cis-trans isomerase
1901	 37.09	0	2113854..2114306	-	150	197285816	-	PMI1965	-	hypothetical protein
1902	 36.43	0	2114769..2115317	+	182	197285817	chrR	PMI1966	-	chromate reductase (NADPH-dependent FMN reductase)
1903	 32.86	-1	2115818..2116027	+	69	197285818	-	PMI1967	-	hypothetical protein
1904	 25.71	-2	2116335..2116544	+	69	197285819	-	PMI1968	-	hypothetical protein
1905	 29.66	-2	2117376..2118083	+	235	197285820	-	PMI1969	-	hypothetical protein
1906	 44.29	0	2118115..2118333	-	72	197285821	-	PMI1970	-	positive regulator of phage late gene transcription
1907	 45.08	+1	2118386..2119483	-	365	197285822	-	PMI1971	-	regulator of late phage gene expression
1908	 45.65	+1	2119483..2119953	-	156	197285823	-	PMI1972	-	phage tail assembly protein
1909	 45.50	+1	2119947..2122781	-	944	197285824	-	PMI1973	-	phage tail fiber protein (tape measure protein)
1910	 45.40	+1	2122908..2123255	-	115	197285825	-	PMI1974	-	phage tail protein
1911	 46.71	+1	2123275..2123790	-	171	197285826	-	PMI1975	-	probable major tail tube protein
1912	 46.38	+1	2123794..2124966	-	390	197285827	-	PMI1976	-	probable major tail sheath protein
1913	 45.16	+1	2125066..2126697	-	543	197285828	-	PMI1977	-	phage variable tail fiber protein
1914	 48.69	+1	2126687..2127298	-	203	197285829	-	PMI1978	-	phage tail protein
1915	 48.29	+1	2127291..2128199	-	302	197285830	-	PMI1979	-	phage baseplate assembly protein
1916	 43.95	0	2128201..2128539	-	112	197285831	-	PMI1980	-	phage baseplate assembly protein
1917	 49.44	+1	2128536..2129162	-	208	197285832	-	PMI1981	-	phage baseplate assembly protein
1918	 42.77	0	2129228..2129863	-	211	197285833	-	PMI1982	-	phage tail completion protein S
1919	 42.47	0	2129853..2130290	-	145	197285834	-	PMI1983	-	phage tail completion protein R
1920	 42.46	0	2130265..2130768	-	167	197285835	-	PMI1984	-	phage lysis protein
1921	 40.00	0	2130765..2131169	-	134	197285836	-	PMI1985	-	phage protein
1922	 42.22	0	2131162..2131476	-	104	197285837	-	PMI1986	-	phage holin
1923	 46.86	+1	2131496..2131702	-	68	197285838	-	PMI1987	-	phage tail protein X
1924	 43.42	0	2131702..2132157	-	151	197285839	-	PMI1988	-	phage head completion/stabilization protein
1925	 46.64	+1	2132235..2132903	-	222	197285840	-	PMI1989	-	phage terminase, endonuclease subunit
1926	 43.72	0	2132903..2134048	-	381	197285841	-	PMI1990	-	phage major capsid protein
1927	 45.68	+1	2134064..2134873	-	269	197285842	-	PMI1991	-	phage capsid scaffolding protein
1928	 44.73	+1	2135046..2136800	+	584	197285843	-	PMI1992	-	phage terminase, ATPase subunit
1929	 42.18	0	2136800..2137828	+	342	197285844	-	PMI1993	-	phage portal protein
1930	 36.44	0	2138439..2139566	-	375	197285845	-	PMI1994	-	transcriptional regulator
1931	 35.86	0	2139577..2140170	-	197	197285846	-	PMI1995	-	hypothetical protein
1932	 26.29	-2	2140281..2140493	-	70	197285847	-	PMI1996	-	hypothetical protein
1933	 40.82	0	2140486..2142864	-	792	197285848	-	PMI1997	-	phage replication protein
1934	 42.59	0	2142864..2143187	-	107	197285849	-	PMI1998	-	hypothetical protein
1935	 36.24	0	2143187..2144011	-	274	197285850	-	PMI1999	-	DNA adenine methylase
1936	 42.79	0	2144013..2144234	-	73	197285851	-	PMI2000	-	phage protein
1937	 36.43	0	2144227..2144484	-	85	197285852	-	PMI2001	-	phage protein
1938	 30.05	-1	2144502..2144897	-	131	197285853	-	PMI2002	-	hypothetical protein
1939	 28.00	-2	2144906..2145055	-	49	197285854	-	PMI2003	-	hypothetical protein
1940	 35.86	0	2145052..2145249	-	65	197285855	-	PMI2004	-	hypothetical protein
1941	 40.58	0	2145255..2145530	-	91	197285856	-	PMI2005	-	phage Cox regulatory protein
1942	 34.33	-1	2145633..2145932	+	99	197285857	-	PMI2006	-	phage repressor protein C
1943	 37.40	0	2145999..2146982	+	327	197285858	-	PMI2007	-	phage integrase
1944	 40.66	0	2147151..2148665	-	504	197285859	lysS	PMI2008	-	lysyl-tRNA synthetase
1945	 42.31	0	2148674..2149772	-	365	197285860	prfB	PMI2009	-	peptide chain release factor 2
1946	 42.96	0	2149944..2151677	-	577	197285861	recJ	PMI2010	-	single-stranded-DNA-specific exonuclease
1947	 36.02	0	2151687..2152394	-	235	197285862	dsbC	PMI2011	-	thiol:disulfide interchange protein
1948	 42.04	0	2152428..2153369	-	313	197285863	xerD	PMI2012	-	tyrosine recombinase
1949	 37.57	0	2153477..2153995	+	172	197285864	fldB	PMI2013	-	flavodoxin 2
1950	 33.82	-1	2154096..2154503	-	135	197285865	-	PMI2014	-	hypothetical protein
1951	 25.13	-2	2154538..2154732	-	64	197285866	-	PMI2015	-	hypothetical protein
1952	 36.88	0	2154811..2155092	-	93	197285867	-	PMI2016	-	hypothetical protein
1953	 43.06	0	2155347..2156333	+	328	197285868	-	PMI2017	-	aminomethyltransferase
1954	 39.14	0	2156360..2156962	+	200	197285869	-	PMI2018	-	metal dependent phosphohydrolase
1955	 43.31	0	2157060..2159936	-	958	197285870	gcvP	PMI2019	-	glycine dehydrogenase [decarboxylating] (glycine cleavage system P-protein)
1956	 41.22	0	2160045..2160437	-	130	197285871	gcvH	PMI2020	-	glycine cleavage system H protein
1957	 43.01	0	2160470..2161564	-	364	197285872	gcvT	PMI2021	-	aminomethyltransferase (glycine cleavage system T protein)
1958	 42.48	0	2161978..2163213	-	411	197285873	visC	PMI2022	-	monooxygenase
1959	 43.05	0	2163243..2164415	-	390	197285874	ubiH	PMI2023	-	2-octaprenyl-6-methoxyphenol hydroxylase
1960	 40.73	0	2164429..2165739	-	436	197285875	pepP	PMI2024	-	Xaa-proline aminopeptidase
1961	 38.29	0	2165793..2166377	-	194	197285876	-	PMI2025	-	hypothetical protein
1962	 38.79	0	2166554..2166883	+	109	197285877	-	PMI2026	-	hypothetical protein
1963	 40.78	0	2167349..2167966	+	205	197285878	-	PMI2027	-	5-formyltetrahydrofolate cyclo ligase
1964	 31.84	-1	2168056..2170128	+	690	197285879	-	PMI2028	-	toxin transporter
1965	 30.70	-1	2170131..2171495	+	454	197285880	-	PMI2029	-	HlyD-family toxin secretion protein
1966	 33.38	-1	2171509..2173632	+	707	197285881	-	PMI2030	-	toxin transporter
1967	 40.85	0	2173709..2174959	-	416	197285882	serA	PMI2031	-	D-3-phosphoglycerate dehydrogenase
1968	 42.16	0	2175317..2175973	-	218	197285883	rpiA	PMI2032	-	ribose 5-phosphate isomerase A
1969	 44.44	0	2176134..2177033	+	299	197285884	iciA	PMI2033	-	chromosome initiation inhibitor (LysR-family transcriptional regulator)
1970	 42.79	0	2177236..2177457	+	73	197285885	-	PMI2034	-	hypothetical protein
1971	 34.59	-1	2177477..2177953	+	158	197285886	-	PMI2035	-	hypothetical protein
1972	 39.86	0	2178121..2178855	-	244	197285887	-	PMI2036	-	hypothetical protein
1973	 39.58	0	2178946..2179569	-	207	197285888	argO	PMI2037	-	arginine exporter
1974	 40.53	0	2179738..2180598	-	286	197285889	-	PMI2038	-	mechanosensitive ion channel protein
1975	 36.29	0	2180690..2181061	-	123	197285890	-	PMI2039	-	hypothetical protein
1976	 44.03	0	2181232..2183829	-	865	197285891	acnB	PMI2040	-	aconitate hydratase 2 (citrate hydro-lyase 2)
1977	 37.73	0	2185083..2198945	+	4620	197285892	-	PMI2043	-	toxin
1978	 42.93	0	2199158..2200585	-	475	197285893	lpdA	PMI2044	-	dihydrolipoyl dehydrogenase (glycine cleavage system L protein)
1979	 44.80	+1	2200787..2202652	-	621	197285894	aceF	PMI2045	-	dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
1980	 42.78	0	2202665..2205331	-	888	197285895	aceE	PMI2046	-	pyruvate dehydrogenase E1 component
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.