IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1830	 41.12	0	2036340..2038136	-	598	197285745	lepA	PMI1890	-	GTP-binding elongation factor
1831	 41.94	0	2038458..2038922	-	154	197285746	rseC	PMI1891	-	sigma-E factor regulatory protein
1832	 36.11	0	2038935..2039906	-	323	197285747	rseB	PMI1892	-	anti sigma E (sigma 24) factor, negative regulator
1833	 43.11	0	2039955..2040578	-	207	197285748	rseA	PMI1893	-	anti sigma E protein
1834	 41.45	0	2040616..2041194	-	192	197285749	rpoE	PMI1894	-	RNA polymerase sigma-E factor
1835	 24.44	-2	2041301..2041525	-	74	197285750	-	PMI1895	-	hypothetical protein
1836	 40.45	0	2041495..2042253	-	252	197285751	-	PMI1896	-	hypothetical protein
1837	 41.22	0	2042522..2043877	+	451	197285752	srmB	PMI1897	-	ATP-dependent RNA helicase
1838	 39.58	0	2044027..2044410	-	127	197285753	grcA	PMI1898	-	autonomous glycyl radical cofactor
1839	 40.68	0	2044745..2045425	+	226	197285754	ung	PMI1899	-	uracil-DNA glycosylase
1840	 40.69	0	2045517..2046128	-	203	197285755	grpE	PMI1900	-	heat shock protein
1841	 42.11	0	2046230..2047129	+	299	197285756	ppnK	PMI1901	-	probable inorganic polyphosphate/ATP-NAD kinase
1842	 40.25	0	2047215..2048876	+	553	197285757	recN	PMI1902	-	DNA repair protein RecN
1843	 39.39	0	2048990..2049352	+	120	197285758	smpA	PMI1903	-	lipoprotein
1844	 40.14	0	2049484..2049777	-	97	197285759	-	PMI1904	-	hypothetical protein
1845	 37.01	0	2049770..2050204	-	144	197285760	-	PMI1905	-	hypothetical protein
1846	 41.82	0	2050361..2050843	+	160	197285761	smpB	PMI1906	-	SsrA-binding protein (small protein B)
1847	 28.17	-2	2051841..2052092	-	83	197285762	-	PMI1907	-	hypothetical protein
1848	 33.22	-1	2052123..2053817	-	564	197285763	-	PMI1908	-	colicin
1849	 43.09	0	2053973..2054515	-	180	197285764	-	PMI1909	-	hypothetical protein
1850	 36.90	0	2054551..2054886	-	111	197285765	imm	PMI1910	-	colicin immunity protein
1851	 40.20	0	2054883..2056208	-	441	197285766	-	PMI1911	-	colicin
1852	 39.11	0	2056688..2058124	-	478	197285767	-	PMI1912	-	FtsK/SpoIIIE-family protein
1853	 35.63	0	2059975..2060541	-	188	197285768	-	PMI1915	-	hypothetical protein
1854	 39.04	0	2060770..2061540	+	256	197285769	-	PMI1916	-	hypothetical protein
1855	 35.79	0	2061556..2062206	+	216	197285770	-	PMI1917	-	hypothetical protein
1856	 35.63	0	2063649..2064344	+	231	197285771	-	PMI1920	-	fimbrial subunit
1857	 36.01	0	2064461..2065582	-	373	197285772	-	PMI1921	-	hypothetical protein
1858	 37.07	0	2066088..2066783	+	231	197285773	-	PMI1922	-	fimbrial subunit
1859	 36.35	0	2066910..2068037	-	375	197285774	-	PMI1923	-	hypothetical protein
1860	 35.73	0	2068566..2069273	+	235	197285775	-	PMI1924	-	fimbrial subunit
1861	 27.27	-2	2069390..2071633	-	747	197285776	-	PMI1925	-	hypothetical protein
1862	 30.59	-1	2071796..2072269	-	157	197285777	-	PMI1926	-	hypothetical protein
1863	 31.40	-1	2072496..2072753	+	85	197285778	-	PMI1927	-	hypothetical protein
1864	 35.06	0	2072954..2073184	+	76	197285779	-	PMI1928	-	hypothetical protein
1865	 33.04	-1	2073454..2074140	+	228	197285780	-	PMI1929	-	fimbrial subunit
1866	 38.64	0	2074733..2075128	+	131	197285781	-	PMI1930	-	hypothetical protein
1867	 39.55	0	2075140..2076636	+	498	197285782	mqo	PMI1931	-	malate:quinone oxidoreductase
1868	 37.01	0	2076748..2077671	-	307	197285783	-	PMI1932	-	transporter
1869	 35.75	0	2078091..2078669	-	192	197285784	-	PMI1933	-	hypothetical protein
1870	 37.48	0	2078698..2079276	-	192	197285785	mdaB	PMI1934	-	modulator of drug activity B (subunit of NADPH quinone reductase)
1871	 40.28	0	2081254..2082780	+	508	197285786	-	PMI1935	-	L-lactate permease
1872	 41.67	0	2082917..2083636	+	239	197285787	-	PMI1936	-	oxidoreductase subunit
1873	 42.12	0	2083647..2085068	+	473	197285788	-	PMI1937	-	iron-sulphur protein protein
1874	 38.87	0	2085070..2085774	+	234	197285789	-	PMI1938	-	hypothetical protein
1875	 36.47	0	2085881..2086294	-	137	197285790	umoC	PMI1939	-	upregulator of flagellar master operon
1876	 35.31	0	2086742..2087095	+	117	197285791	-	PMI1940	-	hypothetical protein
1877	 43.79	0	2087513..2087866	+	117	197285792	-	PMI1941	-	hypothetical protein
1878	 38.07	0	2088334..2088945	-	203	197285793	-	PMI1942	-	hypothetical protein
1879	 39.16	0	2089112..2090278	-	388	197285794	-	PMI1943	-	MFS-family transporter
1880	 40.91	0	2090637..2091494	-	285	197285795	-	PMI1944	-	hypothetical protein
1881	 39.66	0	2091575..2093614	-	679	197285796	ireA	PMI1945	-	TonB-dependent ferric siderophore receptor
1882	 40.18	0	2093852..2095486	-	544	197285797	sglT	PMI1946	-	sodium/glucose cotransporter
1883	 43.82	0	2095863..2096873	-	336	197285798	galR	PMI1947	-	galactose operon repressor (LacI-family transcriptional regulator)
1884	 41.46	0	2097053..2098123	-	356	197285799	galM	PMI1948	-	aldose 1-epimerase
1885	 40.07	0	2098110..2099282	-	390	197285800	galK	PMI1949	-	galactokinase
1886	 39.57	0	2099394..2100452	-	352	197285801	galT	PMI1950	-	galactose-1-phosphate uridylyltransferase
1887	 42.48	0	2100501..2101517	-	338	197285802	galE	PMI1951	-	UDP-glucose 4-epimerase
1888	 40.94	0	2101949..2102908	+	319	197285803	tkrA	PMI1952	-	2-ketogluconate reductase (2-ketoaldonate reductase)
1889	 39.00	0	2102982..2103899	-	305	197285804	-	PMI1953	-	cation efflux protein
1890	 38.58	0	2104440..2104877	+	145	197285805	-	PMI1954	-	universal stress protein
1891	 37.27	0	2104940..2105422	-	160	197285806	eco	PMI1955	-	ecotin precursor
1892	 33.80	-1	2105684..2105899	+	71	197285807	-	PMI1956	-	hypothetical protein
1893	 39.17	0	2106043..2106282	+	79	197285808	-	PMI1957	-	hypothetical protein
1894	 34.55	-1	2106395..2106640	-	81	197285809	-	PMI1958	-	DNA-damage-inducible protein
1895	 40.23	0	2106825..2107172	+	115	197285810	-	PMI1959	-	hypothetical protein
1896	 39.75	0	2107150..2107710	-	186	197285811	-	PMI1960	-	acetyltransferase
1897	 37.26	0	2107785..2108471	-	228	197285812	ccm	PMI1961	-	membrane protein (Ccm1 protein)
1898	 30.82	-1	2109559..2110395	+	278	197285813	-	PMI1962	-	AraC-family transcriptional regulator
1899	 27.54	-2	2110477..2111322	+	281	197285814	-	PMI1963	-	hypothetical protein
1900	 35.68	0	2111380..2113848	-	822	197285815	-	PMI1964	-	exported FKBP-type peptidyl-prolyl cis-trans isomerase
1901	 37.09	0	2113854..2114306	-	150	197285816	-	PMI1965	-	hypothetical protein
1902	 36.43	0	2114769..2115317	+	182	197285817	chrR	PMI1966	-	chromate reductase (NADPH-dependent FMN reductase)
1903	 32.86	-1	2115818..2116027	+	69	197285818	-	PMI1967	-	hypothetical protein
1904	 25.71	-2	2116335..2116544	+	69	197285819	-	PMI1968	-	hypothetical protein
1905	 29.66	-2	2117376..2118083	+	235	197285820	-	PMI1969	-	hypothetical protein
1906	 44.29	0	2118115..2118333	-	72	197285821	-	PMI1970	-	positive regulator of phage late gene transcription
1907	 45.08	+1	2118386..2119483	-	365	197285822	-	PMI1971	-	regulator of late phage gene expression
1908	 45.65	+1	2119483..2119953	-	156	197285823	-	PMI1972	-	phage tail assembly protein
1909	 45.50	+1	2119947..2122781	-	944	197285824	-	PMI1973	-	phage tail fiber protein (tape measure protein)
1910	 45.40	+1	2122908..2123255	-	115	197285825	-	PMI1974	-	phage tail protein
1911	 46.71	+1	2123275..2123790	-	171	197285826	-	PMI1975	-	probable major tail tube protein
1912	 46.38	+1	2123794..2124966	-	390	197285827	-	PMI1976	-	probable major tail sheath protein
1913	 45.16	+1	2125066..2126697	-	543	197285828	-	PMI1977	-	phage variable tail fiber protein
1914	 48.69	+1	2126687..2127298	-	203	197285829	-	PMI1978	-	phage tail protein
1915	 48.29	+1	2127291..2128199	-	302	197285830	-	PMI1979	-	phage baseplate assembly protein
1916	 43.95	0	2128201..2128539	-	112	197285831	-	PMI1980	-	phage baseplate assembly protein
1917	 49.44	+1	2128536..2129162	-	208	197285832	-	PMI1981	-	phage baseplate assembly protein
1918	 42.77	0	2129228..2129863	-	211	197285833	-	PMI1982	-	phage tail completion protein S
1919	 42.47	0	2129853..2130290	-	145	197285834	-	PMI1983	-	phage tail completion protein R
1920	 42.46	0	2130265..2130768	-	167	197285835	-	PMI1984	-	phage lysis protein
1921	 40.00	0	2130765..2131169	-	134	197285836	-	PMI1985	-	phage protein
1922	 42.22	0	2131162..2131476	-	104	197285837	-	PMI1986	-	phage holin
1923	 46.86	+1	2131496..2131702	-	68	197285838	-	PMI1987	-	phage tail protein X
1924	 43.42	0	2131702..2132157	-	151	197285839	-	PMI1988	-	phage head completion/stabilization protein
1925	 46.64	+1	2132235..2132903	-	222	197285840	-	PMI1989	-	phage terminase, endonuclease subunit
1926	 43.72	0	2132903..2134048	-	381	197285841	-	PMI1990	-	phage major capsid protein
1927	 45.68	+1	2134064..2134873	-	269	197285842	-	PMI1991	-	phage capsid scaffolding protein
1928	 44.73	+1	2135046..2136800	+	584	197285843	-	PMI1992	-	phage terminase, ATPase subunit
1929	 42.18	0	2136800..2137828	+	342	197285844	-	PMI1993	-	phage portal protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.