IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1759	 38.76	0	1955083..1956501	+	472	197285674	gltX	PMI1818	-	glutamyl-tRNA synthetase
1760	 42.50	0	1956932..1957684	-	250	197285675	-	PMI1819	-	short-chain dehydrogenase
1761	 37.87	0	1957841..1958281	+	146	197285676	-	PMI1820	-	MarR-family transcriptional regulator
1762	 38.29	0	1958278..1958499	-	73	197285677	-	PMI1821	-	hypothetical protein
1763	 39.66	0	1958663..1959847	-	394	197285678	nupC	PMI1822	-	nucleoside permease
1764	 40.78	0	1960076..1962103	-	675	197285679	ligA	PMI1823	-	DNA ligase
1765	 41.95	0	1962278..1963333	-	351	197285680	zipA	PMI1824	-	cell division protein
1766	 37.22	0	1963556..1964326	+	256	197285681	cysZ	PMI1826	-	sulfate transporter
1767	 41.82	0	1964475..1965428	+	317	197285682	cysK	PMI1827	-	cysteine synthase A
1768	 38.37	0	1965759..1966016	+	85	197285683	hpr	PMI1828	-	PTS system phosphocarrier protein
1769	 40.05	0	1966160..1967887	+	575	197285684	ptsI	PMI1829	-	phosphoenolpyruvate-protein phosphotransferase
1770	 36.67	0	1967937..1968446	+	169	197285685	crr	PMI1830	-	PTS family enzyme IIA component
1771	 43.54	0	1968537..1969418	-	293	197285686	cysM	PMI1831	-	cysteine synthase B
1772	 42.52	0	1969628..1970716	-	362	197285687	cysA	PMI1832	-	sulfate/thiosulfate ABC transporter, ATP-binding protein
1773	 43.42	0	1970736..1971578	-	280	197285688	cysW	PMI1833	-	sulfate/thiosulfate ABC transporter, permease protein
1774	 42.33	0	1971578..1972411	-	277	197285689	cysT	PMI1834	-	sulfate/thiosulfate ABC transporter, permease protein
1775	 39.15	0	1972411..1973442	-	343	197285690	cysP	PMI1835	-	sulfate/thiosulfate ABC transporter, thiosulfate-binding protein
1776	 40.47	0	1973694..1974590	-	298	197285691	-	PMI1836	-	hypothetical protein
1777	 40.44	0	1974739..1975329	-	196	197285692	-	PMI1837	-	lipoprotein
1778	 41.10	0	1975624..1976061	-	145	197285693	-	PMI1838	-	GNAT-family acetyltransferase
1779	 41.14	0	1976195..1977103	+	302	197285694	hemF	PMI1839	-	Coproporphyrinogen III oxidase, aerobic
1780	 34.42	-1	1977183..1977551	-	122	197285695	-	PMI1840	-	lipoprotein
1781	 41.18	0	1977743..1979233	-	496	197285696	engA	PMI1841	-	GTP-binding protein
1782	 42.63	0	1979353..1980525	-	390	197285697	-	PMI1842	-	lipoprotein
1783	 37.84	0	1980540..1981160	-	206	197285698	-	PMI1843	-	hypothetical protein
1784	 41.82	0	1981171..1982454	-	427	197285699	hisS	PMI1844	-	histidyl-tRNA synthetase
1785	 39.93	0	1982577..1983698	-	373	197285700	ispG	PMI1845	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1786	 39.88	0	1983746..1984708	-	320	197285701	-	PMI1846	-	DNA-binding protein
1787	 36.32	0	1984781..1985215	-	144	197285702	-	PMI1847	-	lipoprotein
1788	 40.02	0	1985301..1986482	-	393	197285703	-	PMI1848	-	radical SAM superfamily protein
1789	 40.38	0	1986624..1987049	-	141	197285704	ndk	PMI1849	-	nucleoside diphosphate kinase
1790	 43.32	0	1987285..1989606	-	773	197285705	pbpC	PMI1850	-	penicillin-binding protein 1C
1791	 40.50	0	1989655..1994745	-	1696	197285706	-	PMI1851	-	alpha-2-macroglobulin-like lipoprotein (endopeptidase inhibitor)
1792	 38.03	0	1995007..1995432	-	141	197285707	-	PMI1852	-	hypothetical protein
1793	 41.67	0	1995460..1996755	-	431	197285708	pepB	PMI1853	-	peptidase B
1794	 35.38	0	1997036..1997230	-	64	197285709	-	PMI1854	-	hypothetical protein
1795	 41.96	0	1997246..1997581	-	111	197285710	fdx	PMI1855	-	2Fe-2S ferredoxin
1796	 42.90	0	1997584..1999434	-	616	197285711	hscA	PMI1856	-	chaperone protein HscA
1797	 39.85	0	1999446..1999967	-	173	197285712	hscB	PMI1857	-	co-chaperone protein HscB
1798	 41.36	0	2000016..2000339	-	107	197285713	iscA	PMI1858	-	iron-binding protein (iron-sulfur cluster assembly protein)
1799	 40.05	0	2000430..2000816	-	128	197285714	iscU	PMI1859	-	iron-binding protein
1800	 40.08	0	2000841..2002055	-	404	197285715	iscS	PMI1860	-	cysteine desulfurase
1801	 43.43	0	2002123..2002617	-	164	197285716	iscR	PMI1861	-	iron-sulfur cluster transcriptional regulator
1802	 41.98	0	2002747..2003475	-	242	197285717	-	PMI1862	-	hypothetical tRNA/rRNA methyltransferase
1803	 41.54	0	2003600..2004403	+	267	197285718	suhB	PMI1863	-	inositol-1-monophosphatase
1804	 35.56	0	2004510..2005184	-	224	197285719	-	PMI1864	-	TetR-family transcriptional regulator
1805	 39.72	0	2005210..2006478	-	422	197285720	-	PMI1865	-	peptidase
1806	 40.61	0	2006654..2007808	-	384	197285721	hcaT	PMI1866	-	probable 3-phenylpropionic acid transporter (MFS-family transporter)
1807	 41.55	0	2007901..2009154	-	417	197285722	glyA	PMI1867	-	serine hydroxymethyltransferase
1808	 39.38	0	2009521..2010711	+	396	197285723	hmp	PMI1868	-	flavohemoprotein
1809	 36.45	0	2010807..2011448	-	213	197285724	-	PMI1869	-	hypothetical protein
1810	 38.35	0	2011832..2012170	-	112	197285725	glnB	PMI1870	-	nitrogen regulatory protein P-II
1811	 41.74	0	2012186..2013802	-	538	197285726	nadE	PMI1871	-	glutamine-dependent NAD(+) synthetase
1812	 42.90	0	2013877..2015214	-	445	197285727	-	PMI1872	-	two-component system response regulator (sigma-54 interacting regulator)
1813	 40.35	0	2015226..2016152	-	308	197285728	-	PMI1873	-	lipoprotein
1814	 37.68	0	2016236..2017684	-	482	197285729	-	PMI1874	-	two-component system sensor kinase
1815	 43.43	0	2018372..2022262	-	1296	197285730	purL	PMI1875	-	phosphoribosylformylglycineamide synthetase
1816	 40.61	0	2022527..2023996	+	489	197285731	-	PMI1876	-	transglycosylase
1817	 37.12	0	2024828..2025382	+	184	197285732	pmfA	PMI1877	-	major fimbrial subunit
1818	 39.04	0	2025557..2028043	+	828	197285733	pmfC	PMI1878	-	outer membrane usher protein
1819	 38.56	0	2028075..2028839	+	254	197285734	pmfD	PMI1879	-	fimbrial chaperone protein
1820	 38.27	0	2028865..2029938	+	357	197285735	pmfE	PMI1880	-	minor fimbrial subunit
1821	 35.34	0	2029938..2030486	+	182	197285736	pmfF	PMI1881	-	minor fimbrial subunit
1822	 39.17	0	2030506..2031036	-	176	197285737	tadA	PMI1882	-	tRNA-specific adenosine deaminase
1823	 38.70	0	2031349..2031609	+	86	197285738	-	PMI1883	-	ferredoxin
1824	 39.90	0	2031639..2032019	-	126	197285739	acpS	PMI1884	-	holo-[acyl-carrier protein] synthase
1825	 42.76	0	2032019..2032750	-	243	197285740	pdxJ	PMI1885	-	pyridoxal phosphate biosynthetic protein
1826	 41.84	0	2032820..2033560	-	246	197285741	recO	PMI1886	-	DNA repair protein
1827	 39.05	0	2033573..2034481	-	302	197285742	era	PMI1887	-	GTP-binding protein
1828	 40.53	0	2034478..2035158	-	226	197285743	rnc	PMI1888	-	RNase III, ds RNA
1829	 40.64	0	2035354..2036325	-	323	197285744	lepB	PMI1889	-	signal peptidase I
1830	 41.12	0	2036340..2038136	-	598	197285745	lepA	PMI1890	-	GTP-binding elongation factor
1831	 41.94	0	2038458..2038922	-	154	197285746	rseC	PMI1891	-	sigma-E factor regulatory protein
1832	 36.11	0	2038935..2039906	-	323	197285747	rseB	PMI1892	-	anti sigma E (sigma 24) factor, negative regulator
1833	 43.11	0	2039955..2040578	-	207	197285748	rseA	PMI1893	-	anti sigma E protein
1834	 41.45	0	2040616..2041194	-	192	197285749	rpoE	PMI1894	-	RNA polymerase sigma-E factor
1835	 24.44	-2	2041301..2041525	-	74	197285750	-	PMI1895	-	hypothetical protein
1836	 40.45	0	2041495..2042253	-	252	197285751	-	PMI1896	-	hypothetical protein
1837	 41.22	0	2042522..2043877	+	451	197285752	srmB	PMI1897	-	ATP-dependent RNA helicase
1838	 39.58	0	2044027..2044410	-	127	197285753	grcA	PMI1898	-	autonomous glycyl radical cofactor
1839	 40.68	0	2044745..2045425	+	226	197285754	ung	PMI1899	-	uracil-DNA glycosylase
1840	 40.69	0	2045517..2046128	-	203	197285755	grpE	PMI1900	-	heat shock protein
1841	 42.11	0	2046230..2047129	+	299	197285756	ppnK	PMI1901	-	probable inorganic polyphosphate/ATP-NAD kinase
1842	 40.25	0	2047215..2048876	+	553	197285757	recN	PMI1902	-	DNA repair protein RecN
1843	 39.39	0	2048990..2049352	+	120	197285758	smpA	PMI1903	-	lipoprotein
1844	 40.14	0	2049484..2049777	-	97	197285759	-	PMI1904	-	hypothetical protein
1845	 37.01	0	2049770..2050204	-	144	197285760	-	PMI1905	-	hypothetical protein
1846	 41.82	0	2050361..2050843	+	160	197285761	smpB	PMI1906	-	SsrA-binding protein (small protein B)
1847	 28.17	-2	2051841..2052092	-	83	197285762	-	PMI1907	-	hypothetical protein
1848	 33.22	-1	2052123..2053817	-	564	197285763	-	PMI1908	-	colicin
1849	 43.09	0	2053973..2054515	-	180	197285764	-	PMI1909	-	hypothetical protein
1850	 36.90	0	2054551..2054886	-	111	197285765	imm	PMI1910	-	colicin immunity protein
1851	 40.20	0	2054883..2056208	-	441	197285766	-	PMI1911	-	colicin
1852	 39.11	0	2056688..2058124	-	478	197285767	-	PMI1912	-	FtsK/SpoIIIE-family protein
1853	 35.63	0	2059975..2060541	-	188	197285768	-	PMI1915	-	hypothetical protein
1854	 39.04	0	2060770..2061540	+	256	197285769	-	PMI1916	-	hypothetical protein
1855	 35.79	0	2061556..2062206	+	216	197285770	-	PMI1917	-	hypothetical protein
1856	 35.63	0	2063649..2064344	+	231	197285771	-	PMI1920	-	fimbrial subunit
1857	 36.01	0	2064461..2065582	-	373	197285772	-	PMI1921	-	hypothetical protein
1858	 37.07	0	2066088..2066783	+	231	197285773	-	PMI1922	-	fimbrial subunit
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.