IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1726	 40.65	0	1912830..1914347	-	505	197285641	purF	PMI1783	-	amidophosphoribosyltransferase
1727	 42.28	0	1914378..1914869	-	163	197285642	cvpA	PMI1784	-	colicin V production protein
1728	 48.04	+1	1915052..1915690	-	212	197285643	dedD	PMI1785	-	hypothetical protein
1729	 43.96	0	1915680..1916978	-	432	197285644	folC	PMI1786	-	FolC bifunctional protein [includes: folylpolyglutamate synthase and dihydrofolate synthase]
1730	 42.89	0	1916971..1917933	-	320	197285645	accD	PMI1787	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
1731	 36.61	0	1918230..1918931	-	233	197285646	dedA	PMI1788	-	hypothetical protein
1732	 43.03	0	1918971..1919816	-	281	197285647	truA	PMI1789	-	tRNA pseudouridine synthase A
1733	 43.22	0	1919840..1920850	-	336	197285648	usg	PMI1790	-	aspartate-semialdehyde dehydrogenase
1734	 41.31	0	1920895..1922022	-	375	197285649	pdxB	PMI1792	-	erythronate-4-phosphate dehydrogenase
1735	 38.55	0	1922171..1922956	-	261	197285650	-	PMI1793	-	transcriptional regulator
1736	 38.00	0	1923078..1923998	+	306	197285651	-	PMI1794	-	hypothetical protein
1737	 42.74	0	1924567..1925778	-	403	197285652	fabB	PMI1795	-	3-oxoacyl-[acyl-carrier-protein] synthase I
1738	 40.44	0	1925983..1928022	+	679	197285653	-	PMI1796	-	FAD-dependent oxidoreductase
1739	 38.25	0	1928110..1928658	-	182	197285654	-	PMI1797	-	acetyltransferase
1740	 32.78	-1	1928760..1929656	-	298	197285655	-	PMI1798	-	lipoprotein
1741	 37.36	0	1929978..1930250	-	90	197285656	-	PMI1799	-	hypothetical protein
1742	 39.82	0	1930387..1930941	-	184	197285657	-	PMI1800	-	hypothetical protein
1743	 39.45	0	1930958..1931758	-	266	197285658	-	PMI1801	-	hypothetical protein
1744	 43.37	0	1931931..1933016	-	361	197285659	aroC	PMI1802	-	chorismate synthase
1745	 39.44	0	1933105..1934037	-	310	197285660	-	PMI1803	-	methylase
1746	 39.46	0	1934432..1934986	+	184	197285661	-	PMI1804	-	ferritin-like protein
1747	 39.41	0	1935139..1935681	+	180	197285662	-	PMI1805	-	hypothetical protein
1748	 41.36	0	1935724..1936209	-	161	197285663	sixA	PMI1806	-	phosphohistidine phosphatase
1749	 39.37	0	1936643..1938811	-	722	197285664	fadJ	PMI1807	-	fatty acid oxidation complex alpha subunit [includes: enoyl-coa hydratase and 3-hydroxyacyl-coa dehydrogenase]
1750	 44.21	0	1938811..1940115	-	434	197285665	fadI	PMI1808	-	3-ketoacyl-CoA thiolase
1751	 39.06	0	1940352..1940648	-	98	197285666	-	PMI1809	-	hypothetical protein
1752	 42.22	0	1940994..1942355	+	453	197285667	fadL	PMI1810	-	long-chain fatty acid transport protein
1753	 41.67	0	1942431..1943174	-	247	197285668	vacJ	PMI1811	-	VacJ lipoprotein
1754	 36.35	0	1944497..1945192	+	231	197285669	-	PMI1812	-	fimbrial adapter
1755	 40.17	0	1945822..1946625	+	267	197285670	-	PMI1813	-	hypothetical protein
1756	 39.52	0	1947407..1949686	+	759	197285671	phsA	PMI1814	-	thiosulfate reductase precursor
1757	 38.54	0	1950280..1951047	+	255	197285672	phsC	PMI1816	-	thiosulfate reductase cytochrome b subunit
1758	 34.98	0	1951618..1951920	-	100	197285673	-	PMI1817	-	transcriptional regulator
1759	 38.76	0	1955083..1956501	+	472	197285674	gltX	PMI1818	-	glutamyl-tRNA synthetase
1760	 42.50	0	1956932..1957684	-	250	197285675	-	PMI1819	-	short-chain dehydrogenase
1761	 37.87	0	1957841..1958281	+	146	197285676	-	PMI1820	-	MarR-family transcriptional regulator
1762	 38.29	0	1958278..1958499	-	73	197285677	-	PMI1821	-	hypothetical protein
1763	 39.66	0	1958663..1959847	-	394	197285678	nupC	PMI1822	-	nucleoside permease
1764	 40.78	0	1960076..1962103	-	675	197285679	ligA	PMI1823	-	DNA ligase
1765	 41.95	0	1962278..1963333	-	351	197285680	zipA	PMI1824	-	cell division protein
1766	 37.22	0	1963556..1964326	+	256	197285681	cysZ	PMI1826	-	sulfate transporter
1767	 41.82	0	1964475..1965428	+	317	197285682	cysK	PMI1827	-	cysteine synthase A
1768	 38.37	0	1965759..1966016	+	85	197285683	hpr	PMI1828	-	PTS system phosphocarrier protein
1769	 40.05	0	1966160..1967887	+	575	197285684	ptsI	PMI1829	-	phosphoenolpyruvate-protein phosphotransferase
1770	 36.67	0	1967937..1968446	+	169	197285685	crr	PMI1830	-	PTS family enzyme IIA component
1771	 43.54	0	1968537..1969418	-	293	197285686	cysM	PMI1831	-	cysteine synthase B
1772	 42.52	0	1969628..1970716	-	362	197285687	cysA	PMI1832	-	sulfate/thiosulfate ABC transporter, ATP-binding protein
1773	 43.42	0	1970736..1971578	-	280	197285688	cysW	PMI1833	-	sulfate/thiosulfate ABC transporter, permease protein
1774	 42.33	0	1971578..1972411	-	277	197285689	cysT	PMI1834	-	sulfate/thiosulfate ABC transporter, permease protein
1775	 39.15	0	1972411..1973442	-	343	197285690	cysP	PMI1835	-	sulfate/thiosulfate ABC transporter, thiosulfate-binding protein
1776	 40.47	0	1973694..1974590	-	298	197285691	-	PMI1836	-	hypothetical protein
1777	 40.44	0	1974739..1975329	-	196	197285692	-	PMI1837	-	lipoprotein
1778	 41.10	0	1975624..1976061	-	145	197285693	-	PMI1838	-	GNAT-family acetyltransferase
1779	 41.14	0	1976195..1977103	+	302	197285694	hemF	PMI1839	-	Coproporphyrinogen III oxidase, aerobic
1780	 34.42	-1	1977183..1977551	-	122	197285695	-	PMI1840	-	lipoprotein
1781	 41.18	0	1977743..1979233	-	496	197285696	engA	PMI1841	-	GTP-binding protein
1782	 42.63	0	1979353..1980525	-	390	197285697	-	PMI1842	-	lipoprotein
1783	 37.84	0	1980540..1981160	-	206	197285698	-	PMI1843	-	hypothetical protein
1784	 41.82	0	1981171..1982454	-	427	197285699	hisS	PMI1844	-	histidyl-tRNA synthetase
1785	 39.93	0	1982577..1983698	-	373	197285700	ispG	PMI1845	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1786	 39.88	0	1983746..1984708	-	320	197285701	-	PMI1846	-	DNA-binding protein
1787	 36.32	0	1984781..1985215	-	144	197285702	-	PMI1847	-	lipoprotein
1788	 40.02	0	1985301..1986482	-	393	197285703	-	PMI1848	-	radical SAM superfamily protein
1789	 40.38	0	1986624..1987049	-	141	197285704	ndk	PMI1849	-	nucleoside diphosphate kinase
1790	 43.32	0	1987285..1989606	-	773	197285705	pbpC	PMI1850	-	penicillin-binding protein 1C
1791	 40.50	0	1989655..1994745	-	1696	197285706	-	PMI1851	-	alpha-2-macroglobulin-like lipoprotein (endopeptidase inhibitor)
1792	 38.03	0	1995007..1995432	-	141	197285707	-	PMI1852	-	hypothetical protein
1793	 41.67	0	1995460..1996755	-	431	197285708	pepB	PMI1853	-	peptidase B
1794	 35.38	0	1997036..1997230	-	64	197285709	-	PMI1854	-	hypothetical protein
1795	 41.96	0	1997246..1997581	-	111	197285710	fdx	PMI1855	-	2Fe-2S ferredoxin
1796	 42.90	0	1997584..1999434	-	616	197285711	hscA	PMI1856	-	chaperone protein HscA
1797	 39.85	0	1999446..1999967	-	173	197285712	hscB	PMI1857	-	co-chaperone protein HscB
1798	 41.36	0	2000016..2000339	-	107	197285713	iscA	PMI1858	-	iron-binding protein (iron-sulfur cluster assembly protein)
1799	 40.05	0	2000430..2000816	-	128	197285714	iscU	PMI1859	-	iron-binding protein
1800	 40.08	0	2000841..2002055	-	404	197285715	iscS	PMI1860	-	cysteine desulfurase
1801	 43.43	0	2002123..2002617	-	164	197285716	iscR	PMI1861	-	iron-sulfur cluster transcriptional regulator
1802	 41.98	0	2002747..2003475	-	242	197285717	-	PMI1862	-	hypothetical tRNA/rRNA methyltransferase
1803	 41.54	0	2003600..2004403	+	267	197285718	suhB	PMI1863	-	inositol-1-monophosphatase
1804	 35.56	0	2004510..2005184	-	224	197285719	-	PMI1864	-	TetR-family transcriptional regulator
1805	 39.72	0	2005210..2006478	-	422	197285720	-	PMI1865	-	peptidase
1806	 40.61	0	2006654..2007808	-	384	197285721	hcaT	PMI1866	-	probable 3-phenylpropionic acid transporter (MFS-family transporter)
1807	 41.55	0	2007901..2009154	-	417	197285722	glyA	PMI1867	-	serine hydroxymethyltransferase
1808	 39.38	0	2009521..2010711	+	396	197285723	hmp	PMI1868	-	flavohemoprotein
1809	 36.45	0	2010807..2011448	-	213	197285724	-	PMI1869	-	hypothetical protein
1810	 38.35	0	2011832..2012170	-	112	197285725	glnB	PMI1870	-	nitrogen regulatory protein P-II
1811	 41.74	0	2012186..2013802	-	538	197285726	nadE	PMI1871	-	glutamine-dependent NAD(+) synthetase
1812	 42.90	0	2013877..2015214	-	445	197285727	-	PMI1872	-	two-component system response regulator (sigma-54 interacting regulator)
1813	 40.35	0	2015226..2016152	-	308	197285728	-	PMI1873	-	lipoprotein
1814	 37.68	0	2016236..2017684	-	482	197285729	-	PMI1874	-	two-component system sensor kinase
1815	 43.43	0	2018372..2022262	-	1296	197285730	purL	PMI1875	-	phosphoribosylformylglycineamide synthetase
1816	 40.61	0	2022527..2023996	+	489	197285731	-	PMI1876	-	transglycosylase
1817	 37.12	0	2024828..2025382	+	184	197285732	pmfA	PMI1877	-	major fimbrial subunit
1818	 39.04	0	2025557..2028043	+	828	197285733	pmfC	PMI1878	-	outer membrane usher protein
1819	 38.56	0	2028075..2028839	+	254	197285734	pmfD	PMI1879	-	fimbrial chaperone protein
1820	 38.27	0	2028865..2029938	+	357	197285735	pmfE	PMI1880	-	minor fimbrial subunit
1821	 35.34	0	2029938..2030486	+	182	197285736	pmfF	PMI1881	-	minor fimbrial subunit
1822	 39.17	0	2030506..2031036	-	176	197285737	tadA	PMI1882	-	tRNA-specific adenosine deaminase
1823	 38.70	0	2031349..2031609	+	86	197285738	-	PMI1883	-	ferredoxin
1824	 39.90	0	2031639..2032019	-	126	197285739	acpS	PMI1884	-	holo-[acyl-carrier protein] synthase
1825	 42.76	0	2032019..2032750	-	243	197285740	pdxJ	PMI1885	-	pyridoxal phosphate biosynthetic protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.