IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1679	 37.14	0	1857868..1858998	+	376	197285594	nrdB	PMI1735	-	ribonucleoside-diphosphate reductase 1, beta subunit
1680	 42.29	0	1859023..1859301	+	92	197285595	-	PMI1736	-	ferredoxin
1681	 35.47	0	1859409..1859642	+	77	197285596	-	PMI1737	-	lipoprotein
1682	 41.25	0	1859833..1861044	+	403	197285597	tyrP	PMI1738	-	tyrosine-specific transport protein
1683	 41.07	0	1861149..1861691	-	180	197285598	-	PMI1739	-	hypothetical protein
1684	 40.48	0	1861974..1863428	+	484	197285599	katA	PMI1740	-	catalase
1685	 40.77	0	1863524..1864948	-	474	197285600	menE	PMI1741	-	O-succinylbenzoic acid--CoA ligase
1686	 44.34	0	1864936..1865907	-	323	197285601	menC	PMI1742	-	O-succinylbenzoate-CoA synthase
1687	 43.24	0	1865907..1866764	-	285	197285602	menB	PMI1743	-	naphthoate synthase
1688	 41.15	0	1866777..1867544	-	255	197285603	yfbB	PMI1744	-	acyl-CoA thioester hydrolase
1689	 43.06	0	1867528..1869213	-	561	197285604	menD	PMI1745	-	menaquinone biosynthesis protein mend [includes: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase and 2-oxoglutarate decarboxylase]
1690	 40.86	0	1869555..1870883	-	442	197285605	menF	PMI1746	-	menaquinone-specific isochorismate synthase
1691	 28.22	-2	1871095..1872306	+	403	197285606	xaxA	PMI1747	-	toxin
1692	 28.08	-2	1872321..1873328	+	335	197285607	xaxB	PMI1748	-	toxin
1693	 42.72	0	1873693..1875162	-	489	197285608	nuoN	PMI1750	-	NADH-quinone oxidoreductase chain N
1694	 42.61	0	1875169..1876698	-	509	197285609	nuoM	PMI1751	-	NADH-quinone oxidoreductase chain M
1695	 43.03	0	1876718..1878553	-	611	197285610	nuoL	PMI1752	-	NADH-quinone oxidoreductase chain L
1696	 42.57	0	1878550..1878852	-	100	197285611	nuoK	PMI1753	-	NADH-quinone oxidoreductase chain K
1697	 42.32	0	1878849..1879382	-	177	197285612	nuoJ	PMI1754	-	NADH-quinone oxidoreductase chain J
1698	 42.91	0	1879395..1879937	-	180	197285613	nuoI	PMI1755	-	NADH-quinone oxidoreductase chain I
1699	 42.02	0	1879952..1880929	-	325	197285614	nuoH	PMI1756	-	NADH-quinone oxidoreductase chain H
1700	 45.66	+1	1880929..1883661	-	910	197285615	nuoG	PMI1757	-	NADH-quinone oxidoreductase chain G
1701	 46.45	+1	1883715..1885079	-	454	197285616	nuoF	PMI1758	-	NADH-quinone oxidoreductase chain F
1702	 41.94	0	1885076..1885621	-	181	197285617	nuoE	PMI1759	-	NADH-quinone oxidoreductase chain E
1703	 45.08	+1	1885624..1887420	-	598	197285618	nuoC	PMI1760	-	NADH-quinone oxidoreductase chain C/D
1704	 45.48	+1	1887497..1888171	-	224	197285619	nuoB	PMI1761	-	NADH-quinone oxidoreductase chain B
1705	 46.36	+1	1888189..1888641	-	150	197285620	nuoA	PMI1762	-	NADH-quinone oxidoreductase chain A
1706	 33.33	-1	1888751..1889017	+	88	197285621	-	PMI1763	-	hypothetical protein
1707	 42.05	0	1889437..1890354	-	305	197285622	hexA	PMI1764	-	LysR-family transcriptional regulator
1708	 40.58	0	1891197..1892411	+	404	197285623	-	PMI1765	-	aminotransferase
1709	 37.29	0	1892544..1893125	+	193	197285624	-	PMI1766	-	5'-nucleotidase
1710	 42.57	0	1893195..1895024	-	609	197285625	-	PMI1767	-	cation transporter
1711	 41.78	0	1895134..1895796	-	220	197285626	-	PMI1768	-	phosphatase
1712	 40.36	0	1895831..1896328	-	165	197285627	-	PMI1769	-	hypothetical protein
1713	 44.08	0	1896466..1896921	-	151	197285628	-	PMI1770	-	hypothetical protein
1714	 41.56	0	1897313..1898515	+	400	197285629	ackA	PMI1771	-	acetate kinase
1715	 41.59	0	1898593..1900737	+	714	197285630	pta	PMI1772	-	phosphate acetyltransferase
1716	 40.21	0	1902531..1904930	+	799	197285631	gcd	PMI1773	-	quinoprotein glucose dehydrogenase
1717	 37.01	0	1905008..1906231	-	407	197285632	-	PMI1774	-	alanine racemase
1718	 40.18	0	1906488..1907744	-	418	197285633	-	PMI1775	-	PTS system EIIC component
1719	 37.50	0	1907755..1908042	-	95	197285634	-	PMI1776	-	PTS system EIIB component
1720	 37.61	0	1908072..1908515	-	147	197285635	-	PMI1777	-	PTS system EIIA component
1721	 41.07	0	1908742..1909788	+	348	197285636	-	PMI1778	-	LacI-family transcriptional regulator
1722	 43.46	0	1909785..1910327	-	180	197285637	-	PMI1779	-	NUDIX hydrolase
1723	 40.65	0	1910523..1911137	+	204	197285638	-	PMI1780	-	glutathione-S transferase
1724	 40.07	0	1911202..1912107	+	301	197285639	-	PMI1781	-	cell division inhibitor, NAD(P)-binding
1725	 41.92	0	1912127..1912708	-	193	197285640	ubiX	PMI1782	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1726	 40.65	0	1912830..1914347	-	505	197285641	purF	PMI1783	-	amidophosphoribosyltransferase
1727	 42.28	0	1914378..1914869	-	163	197285642	cvpA	PMI1784	-	colicin V production protein
1728	 48.04	+1	1915052..1915690	-	212	197285643	dedD	PMI1785	-	hypothetical protein
1729	 43.96	0	1915680..1916978	-	432	197285644	folC	PMI1786	-	FolC bifunctional protein [includes: folylpolyglutamate synthase and dihydrofolate synthase]
1730	 42.89	0	1916971..1917933	-	320	197285645	accD	PMI1787	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
1731	 36.61	0	1918230..1918931	-	233	197285646	dedA	PMI1788	-	hypothetical protein
1732	 43.03	0	1918971..1919816	-	281	197285647	truA	PMI1789	-	tRNA pseudouridine synthase A
1733	 43.22	0	1919840..1920850	-	336	197285648	usg	PMI1790	-	aspartate-semialdehyde dehydrogenase
1734	 41.31	0	1920895..1922022	-	375	197285649	pdxB	PMI1792	-	erythronate-4-phosphate dehydrogenase
1735	 38.55	0	1922171..1922956	-	261	197285650	-	PMI1793	-	transcriptional regulator
1736	 38.00	0	1923078..1923998	+	306	197285651	-	PMI1794	-	hypothetical protein
1737	 42.74	0	1924567..1925778	-	403	197285652	fabB	PMI1795	-	3-oxoacyl-[acyl-carrier-protein] synthase I
1738	 40.44	0	1925983..1928022	+	679	197285653	-	PMI1796	-	FAD-dependent oxidoreductase
1739	 38.25	0	1928110..1928658	-	182	197285654	-	PMI1797	-	acetyltransferase
1740	 32.78	-1	1928760..1929656	-	298	197285655	-	PMI1798	-	lipoprotein
1741	 37.36	0	1929978..1930250	-	90	197285656	-	PMI1799	-	hypothetical protein
1742	 39.82	0	1930387..1930941	-	184	197285657	-	PMI1800	-	hypothetical protein
1743	 39.45	0	1930958..1931758	-	266	197285658	-	PMI1801	-	hypothetical protein
1744	 43.37	0	1931931..1933016	-	361	197285659	aroC	PMI1802	-	chorismate synthase
1745	 39.44	0	1933105..1934037	-	310	197285660	-	PMI1803	-	methylase
1746	 39.46	0	1934432..1934986	+	184	197285661	-	PMI1804	-	ferritin-like protein
1747	 39.41	0	1935139..1935681	+	180	197285662	-	PMI1805	-	hypothetical protein
1748	 41.36	0	1935724..1936209	-	161	197285663	sixA	PMI1806	-	phosphohistidine phosphatase
1749	 39.37	0	1936643..1938811	-	722	197285664	fadJ	PMI1807	-	fatty acid oxidation complex alpha subunit [includes: enoyl-coa hydratase and 3-hydroxyacyl-coa dehydrogenase]
1750	 44.21	0	1938811..1940115	-	434	197285665	fadI	PMI1808	-	3-ketoacyl-CoA thiolase
1751	 39.06	0	1940352..1940648	-	98	197285666	-	PMI1809	-	hypothetical protein
1752	 42.22	0	1940994..1942355	+	453	197285667	fadL	PMI1810	-	long-chain fatty acid transport protein
1753	 41.67	0	1942431..1943174	-	247	197285668	vacJ	PMI1811	-	VacJ lipoprotein
1754	 36.35	0	1944497..1945192	+	231	197285669	-	PMI1812	-	fimbrial adapter
1755	 40.17	0	1945822..1946625	+	267	197285670	-	PMI1813	-	hypothetical protein
1756	 39.52	0	1947407..1949686	+	759	197285671	phsA	PMI1814	-	thiosulfate reductase precursor
1757	 38.54	0	1950280..1951047	+	255	197285672	phsC	PMI1816	-	thiosulfate reductase cytochrome b subunit
1758	 34.98	0	1951618..1951920	-	100	197285673	-	PMI1817	-	transcriptional regulator
1759	 38.76	0	1955083..1956501	+	472	197285674	gltX	PMI1818	-	glutamyl-tRNA synthetase
1760	 42.50	0	1956932..1957684	-	250	197285675	-	PMI1819	-	short-chain dehydrogenase
1761	 37.87	0	1957841..1958281	+	146	197285676	-	PMI1820	-	MarR-family transcriptional regulator
1762	 38.29	0	1958278..1958499	-	73	197285677	-	PMI1821	-	hypothetical protein
1763	 39.66	0	1958663..1959847	-	394	197285678	nupC	PMI1822	-	nucleoside permease
1764	 40.78	0	1960076..1962103	-	675	197285679	ligA	PMI1823	-	DNA ligase
1765	 41.95	0	1962278..1963333	-	351	197285680	zipA	PMI1824	-	cell division protein
1766	 37.22	0	1963556..1964326	+	256	197285681	cysZ	PMI1826	-	sulfate transporter
1767	 41.82	0	1964475..1965428	+	317	197285682	cysK	PMI1827	-	cysteine synthase A
1768	 38.37	0	1965759..1966016	+	85	197285683	hpr	PMI1828	-	PTS system phosphocarrier protein
1769	 40.05	0	1966160..1967887	+	575	197285684	ptsI	PMI1829	-	phosphoenolpyruvate-protein phosphotransferase
1770	 36.67	0	1967937..1968446	+	169	197285685	crr	PMI1830	-	PTS family enzyme IIA component
1771	 43.54	0	1968537..1969418	-	293	197285686	cysM	PMI1831	-	cysteine synthase B
1772	 42.52	0	1969628..1970716	-	362	197285687	cysA	PMI1832	-	sulfate/thiosulfate ABC transporter, ATP-binding protein
1773	 43.42	0	1970736..1971578	-	280	197285688	cysW	PMI1833	-	sulfate/thiosulfate ABC transporter, permease protein
1774	 42.33	0	1971578..1972411	-	277	197285689	cysT	PMI1834	-	sulfate/thiosulfate ABC transporter, permease protein
1775	 39.15	0	1972411..1973442	-	343	197285690	cysP	PMI1835	-	sulfate/thiosulfate ABC transporter, thiosulfate-binding protein
1776	 40.47	0	1973694..1974590	-	298	197285691	-	PMI1836	-	hypothetical protein
1777	 40.44	0	1974739..1975329	-	196	197285692	-	PMI1837	-	lipoprotein
1778	 41.10	0	1975624..1976061	-	145	197285693	-	PMI1838	-	GNAT-family acetyltransferase
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.