IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1587	 35.42	0	1754418..1754561	-	47	197285502	-	PMI1643	-	hypothetical protein
1588	 38.84	0	1754650..1755594	-	314	197285503	flgL	PMI1644	-	flagellar hook-associated protein 3 (hook-filament junction protein)
1589	 39.90	0	1755620..1757263	-	547	197285504	flgK	PMI1645	-	flagellar hook-associated protein 1
1590	 42.35	0	1757382..1758368	-	328	197285505	flgJ	PMI1646	-	peptidoglycan hydrolase (muramidase)
1591	 45.26	+1	1758368..1759474	-	368	197285506	flgI	PMI1647	-	flagellar P-ring protein precursor (basal body P-ring protein)
1592	 44.35	0	1759489..1760232	-	247	197285507	flgH	PMI1648	-	flagellar L-ring protein precursor
1593	 44.19	0	1760295..1761077	-	260	197285508	flgG	PMI1649	-	flagellar basal-body rod protein (distal rod protein)
1594	 48.15	+1	1761097..1761852	-	251	197285509	flgF	PMI1650	-	flagellar basal-body rod protein
1595	 40.79	0	1761874..1763094	-	406	197285510	flgE	PMI1651	-	flagellar hook protein
1596	 38.74	0	1763123..1763917	-	264	197285511	flgD	PMI1652	-	basal-body rod modification protein
1597	 42.72	0	1763930..1764334	-	134	197285512	flgC	PMI1653	-	flagellar basal-body rod protein
1598	 40.58	0	1764340..1764753	-	137	197285513	flgB	PMI1654	-	flagellar basal-body rod protein
1599	 40.33	0	1764963..1765619	+	218	197285514	flgA	PMI1655	-	flagella basal body P-ring formation protein
1600	 41.33	0	1766296..1766595	+	99	197285515	flgM	PMI1656	-	negative regulator of flagellin synthesis (anti-sigma-28 factor)
1601	 37.41	0	1766607..1767047	+	146	197285516	flgN	PMI1657	-	flagella synthesis protein
1602	 28.42	-2	1767216..1768478	-	420	197285517	floA	PMI1658	-	haemagglutinin
1603	 43.57	0	1768884..1770974	-	696	197285518	flhA	PMI1659	-	flagellar biosynthesis protein
1604	 42.91	0	1770967..1772115	-	382	197285519	flhB	PMI1660	-	flagellar biosynthetic protein
1605	 39.73	0	1772544..1773200	-	218	197285520	cheZ	PMI1661	-	chemotaxis phosphatase
1606	 40.51	0	1773210..1773599	-	129	197285521	cheY	PMI1662	-	chemotaxis response regulator
1607	 43.40	0	1773659..1774711	-	350	197285522	cheB	PMI1663	-	chemotaxis response regulator protein-glutamate methylesterase
1608	 38.38	0	1774704..1775594	-	296	197285523	cheR	PMI1664	-	chemotaxis protein methyltransferase
1609	 39.53	0	1775601..1777247	-	548	197285524	-	PMI1665	-	methyl-accepting chemotaxis protein
1610	 40.13	0	1777307..1779013	-	568	197285525	-	PMI1666	-	methyl-accepting chemotaxis protein
1611	 36.13	0	1779361..1779861	-	166	197285526	cheW	PMI1667	-	chemotaxis protein
1612	 40.63	0	1779883..1782102	-	739	197285527	cheA	PMI1668	-	chemotaxis protein
1613	 40.10	0	1782138..1783187	-	349	197285528	motB	PMI1669	-	chemotaxis protein (motility protein B)
1614	 42.51	0	1783190..1784083	-	297	197285529	motA	PMI1670	-	chemotaxis protein (motility protein A)
1615	 37.97	0	1784218..1784799	-	193	197285530	flhC	PMI1671	-	flagellar transcriptional activator
1616	 37.89	0	1784802..1785152	-	116	197285531	flhD	PMI1672	-	flagellar transcriptional activator
1617	 37.65	0	1787910..1788071	-	53	197285532	-	PMI1673	-	hypothetical protein
1618	 43.35	0	1788474..1789172	-	232	197285533	mgtC	PMI1674	-	Mg(2+) transport ATPase protein C
1619	 35.38	0	1789537..1789731	-	64	197285534	dsrB	PMI1675	-	protein DsrB
1620	 41.78	0	1789840..1790052	-	70	197285535	cspC	PMI1676	-	cold shock-like protein
1621	 36.69	0	1790508..1791014	+	168	197285536	-	PMI1677	-	hypothetical protein
1622	 41.41	0	1792488..1793540	+	350	197285537	pyrC	PMI1678	-	dihydroorotase
1623	 34.90	0	1793752..1794006	+	84	197285538	-	PMI1679	-	hypothetical protein
1624	 29.02	-2	1794321..1794923	+	200	197285539	rcsA	PMI1680	-	colanic acid capsular biosynthesis activation protein (LuxR-family transcriptional regulator)
1625	 44.14	0	1795263..1798343	-	1026	197285540	ttrA	PMI1681	-	tetrathionate reductase subunit A
1626	 43.44	0	1798336..1799364	-	342	197285541	ttrC	PMI1682	-	tetrathionate reductase subunit C
1627	 44.53	0	1799361..1800101	-	246	197285542	ttrB	PMI1683	-	tetrathionate reductase subunit B
1628	 40.31	0	1800265..1802028	+	587	197285543	ttrS	PMI1684	-	two component system sensor kinase of tetrathionate reductase complex
1629	 39.64	0	1802039..1802641	+	200	197285544	ttrR	PMI1685	-	two component system response regulator of tetrathionate reductase complex
1630	 40.66	0	1802716..1803657	+	313	197285545	htrB	PMI1686	-	lipid A biosynthesis lauroyl acyltransferase (heat shock protein B)
1631	 40.03	0	1803942..1805150	+	402	197285546	mdtG	PMI1687	-	multidrug resistance protein (MFS-family transporter)
1632	 41.54	0	1805571..1807106	+	511	197285547	-	PMI1688	-	di-/tripeptide transporter
1633	 21.59	-2	1807417..1807731	+	104	197285548	-	PMI1689	-	hypothetical protein
1634	 38.97	0	1807896..1808675	+	259	197285549	-	PMI1690	-	hypothetical protein
1635	 40.66	0	1808776..1809198	+	140	197285550	-	PMI1691	-	thioesterase superfamilyl protein
1636	 40.25	0	1809428..1809745	-	105	197285551	-	PMI1692	-	hypothetical protein
1637	 35.99	0	1809899..1810537	-	212	197285552	-	PMI1693	-	acetyltransferase
1638	 40.57	0	1810806..1811897	-	363	197285553	-	PMI1694	-	NADH-dependent flavin oxidoreductase
1639	 34.83	0	1812166..1812432	-	88	197285554	-	PMI1695	-	hypothetical protein
1640	 37.54	0	1813416..1814081	+	221	197285555	rssB	PMI1696	-	swarming motility regulation two-component system, response regulator
1641	 36.47	0	1814082..1815485	+	467	197285556	rssA	PMI1697	-	swarming motility regulation two-component system, sensor kinase
1642	 40.61	0	1815542..1815871	-	109	197285557	-	PMI1698	-	hypothetical protein
1643	 39.22	0	1815868..1816530	-	220	197285558	-	PMI1699	-	branched-chain amino acid transporter
1644	 41.53	0	1816615..1817175	+	186	197285559	-	PMI1700	-	transcriptional regulator
1645	 37.53	0	1817238..1818095	-	285	197285560	-	PMI1701	-	D-alanine aminotransferase
1646	 35.41	0	1818282..1818860	+	192	197285561	-	PMI1702	-	hypothetical protein
1647	 36.39	0	1818940..1820577	-	545	197285562	-	PMI1703	-	hypothetical protein
1648	 38.11	0	1821177..1822433	+	418	197285563	-	PMI1704	-	mechanosensitive ion channel protein
1649	 41.66	0	1822787..1825225	+	812	197285564	dmsA	PMI1705	-	dimethyl sulfoxide reductase chain A
1650	 41.26	0	1825237..1825854	+	205	197285565	dmsB	PMI1706	-	anaerobic dimethyl sulfoxide reductase chain B
1651	 40.41	0	1825858..1826634	+	258	197285566	dmsC	PMI1707	-	anaerobic dimethyl sulfoxide reductase chain C
1652	 40.15	0	1826750..1827292	-	180	197285567	-	PMI1708	-	hypothetical protein
1653	 37.78	0	1827859..1828038	+	59	197285568	-	PMI1709	-	hypothetical protein
1654	 37.72	0	1828299..1829552	-	417	197285569	-	PMI1710	-	phage protein
1655	 33.64	-1	1829558..1830214	-	218	197285570	-	PMI1711	-	phage protein
1656	 40.82	0	1830211..1831398	-	395	197285571	-	PMI1712	-	phage protein
1657	 37.39	0	1831391..1831735	-	114	197285572	-	PMI1713	-	phage protein
1658	 42.28	0	1831732..1832424	-	230	197285573	-	PMI1714	-	phage protein
1659	 40.71	0	1832427..1833239	-	270	197285574	-	PMI1715	-	phage protein
1660	 37.38	0	1833208..1833528	-	106	197285575	-	PMI1716	-	phage protein
1661	 36.40	0	1833541..1834029	-	162	197285576	-	PMI1717	-	phage protein
1662	 37.07	0	1834032..1836335	-	767	197285577	-	PMI1718	-	phage protein
1663	 41.18	0	1836418..1836876	-	152	197285578	-	PMI1719	-	phage protein
1664	 43.05	0	1836936..1837388	-	150	197285579	-	PMI1720	-	phage protein
1665	 42.61	0	1837399..1838886	-	495	197285580	-	PMI1721	-	phage protein
1666	 31.19	-1	1838895..1839407	-	170	197285581	-	PMI1722	-	phage protein
1667	 37.78	0	1839444..1839893	-	149	197285582	-	PMI1723	-	phage protein (endopeptidase/lysis protein)
1668	 30.37	-1	1839890..1840294	-	134	197285583	-	PMI1724	-	phage protein
1669	 34.00	-1	1840297..1840596	-	99	197285584	-	PMI1725	-	phage holin (lysis protein)
1670	 37.75	0	1840978..1841793	-	271	197285585	-	PMI1726	-	phage antitermination protein
1671	 39.43	0	1842039..1842776	+	245	197285586	-	PMI1727	-	phage repressor protein
1672	 38.43	0	1842876..1843895	-	339	197285587	-	PMI1728	-	tryptophanyl-tRNA synthetase
1673	 33.04	-1	1845004..1847697	+	897	197285588	rsbA	PMI1729	-	swarming behavior regulation two-component system, sensor kinase
1674	 35.92	0	1847715..1848371	+	218	197285589	rcsB	PMI1730	-	two component system, response regulator (capsular synthesis regulator component B)
1675	 34.75	-1	1848619..1851447	-	942	197285590	rcsC	PMI1731	-	two component system, [includes both sensor kinase and response regulator domains] (capsular synthesis regulator component C)
1676	 43.20	0	1851648..1854281	-	877	197285591	gyrA	PMI1732	-	DNA gyrase subunit A
1677	 41.60	0	1854466..1855203	+	245	197285592	ubiG	PMI1733	-	3-demethylubiquinone-9 3-methyltransferase
1678	 39.70	0	1855565..1857856	+	763	197285593	nrdA	PMI1734	-	ribonucleoside-diphosphate reductase 1 alpha chain
1679	 37.14	0	1857868..1858998	+	376	197285594	nrdB	PMI1735	-	ribonucleoside-diphosphate reductase 1, beta subunit
1680	 42.29	0	1859023..1859301	+	92	197285595	-	PMI1736	-	ferredoxin
1681	 35.47	0	1859409..1859642	+	77	197285596	-	PMI1737	-	lipoprotein
1682	 41.25	0	1859833..1861044	+	403	197285597	tyrP	PMI1738	-	tyrosine-specific transport protein
1683	 41.07	0	1861149..1861691	-	180	197285598	-	PMI1739	-	hypothetical protein
1684	 40.48	0	1861974..1863428	+	484	197285599	katA	PMI1740	-	catalase
1685	 40.77	0	1863524..1864948	-	474	197285600	menE	PMI1741	-	O-succinylbenzoic acid--CoA ligase
1686	 44.34	0	1864936..1865907	-	323	197285601	menC	PMI1742	-	O-succinylbenzoate-CoA synthase
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.