IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1329	 42.87	0	1463166..1464035	-	289	197285244	pdxY	PMI1385	-	pyridoxamine kinase
1330	 42.04	0	1464156..1465442	-	428	197285245	tyrS	PMI1386	-	tyrosyl-tRNA synthetase
1331	 38.99	0	1465561..1466214	-	217	197285246	pdxH	PMI1387	-	pyridoxamine 5'-phosphate oxidase
1332	 43.58	0	1466258..1467370	-	370	197285247	-	PMI1388	-	hypothetical protein
1333	 43.38	0	1467591..1468058	+	155	197285248	slyB	PMI1389	-	outer membrane lipoprotein
1334	 33.57	-1	1468403..1468831	-	142	197285249	slyA	PMI1390	-	MarR-family transcriptional regulator
1335	 36.25	0	1469294..1469533	-	79	197285250	-	PMI1391	-	hypothetical protein
1336	 42.65	0	1469714..1470121	+	135	197285251	gloA	PMI1392	-	lactoylglutathione lyase
1337	 41.00	0	1470217..1470855	+	212	197285252	rnt	PMI1393	-	ribonuclease T
1338	 40.12	0	1470977..1471315	-	112	197285253	-	PMI1394	-	glutaredoxin
1339	 34.82	0	1471720..1472055	-	111	197285254	-	PMI1395	-	hypothetical protein
1340	 38.85	0	1472352..1473167	+	271	197285255	-	PMI1396	-	hypothetical protein
1341	 38.34	0	1473407..1473985	+	192	197285256	sodB	PMI1397	-	superoxide dismutase [Fe]
1342	 26.92	-2	1474220..1474375	+	51	197285257	-	PMI1398	-	hypothetical protein
1343	 42.79	0	1474472..1475497	+	341	197285258	purR	PMI1399	-	purine nucleotide synthesis repressor (LacI-family transcriptional regulator)
1344	 45.07	+1	1475507..1476409	-	300	197285259	-	PMI1400	-	LysR-family transcriptional regulator
1345	 42.04	0	1476529..1477746	+	405	197285260	-	PMI1401	-	MFS-family transporter
1346	 39.74	0	1478049..1479203	+	384	197285261	cfa	PMI1402	-	cyclopropane-fatty-acyl-phospholipid synthase
1347	 38.51	0	1479293..1479949	-	218	197285262	ribE	PMI1403	-	riboflavin synthase alpha chain
1348	 41.56	0	1480253..1481626	+	457	197285263	mdtK	PMI1404	-	multidrug resistance protein
1349	 40.91	0	1482432..1483844	+	470	197285264	pykF	PMI1405	-	pyruvate kinase
1350	 40.48	0	1483959..1485512	-	517	197285265	gadC	PMI1406	-	probable glutamate/gamma-aminobutyrate antiporter (extreme acid sensitivity protein)
1351	 42.82	0	1485617..1487008	-	463	197285266	gadB	PMI1407	-	glutamate decarboxylase beta
1352	 37.80	0	1487412..1488464	+	350	197285267	-	PMI1408	-	conjugated bile acid hydrolase
1353	 38.33	0	1488740..1488979	+	79	197285268	lpp	PMI1409	-	major outer membrane lipoprotein (murein-lipoprotein)
1354	 42.70	0	1489083..1490000	-	305	197285269	-	PMI1410	-	peptidoglycan-binding protein
1355	 41.96	0	1490118..1490546	-	142	197285270	sufE	PMI1411	-	cysteine desulfuration protein
1356	 41.30	0	1490568..1491809	-	413	197285271	sufS	PMI1412	-	cysteine desulfurase (selenocysteine lyase)
1357	 40.37	0	1491816..1493123	-	435	197285272	sufD	PMI1413	-	subunit of cysteine desulfurase activator complex
1358	 39.22	0	1493098..1493844	-	248	197285273	sufC	PMI1414	-	probable ATP-binding component of cysteine desulfurase (ATP-dependent transporter)
1359	 41.68	0	1493889..1495385	-	498	197285274	sufB	PMI1415	-	component of cysteine desulfurase activator complex
1360	 40.11	0	1495403..1495771	-	122	197285275	sufA	PMI1416	-	scaffold protein for iron-sulfur cluster assembly
1361	 31.37	-1	1496179..1496790	-	203	197285276	-	PMI1417	-	lipoprotein
1362	 39.86	0	1496941..1497354	-	137	197285277	-	PMI1418	-	thioesterase
1363	 41.28	0	1497351..1500407	-	1018	197285278	-	PMI1419	-	FAD-binding oxidase (flavoprotein)
1364	 39.89	0	1500625..1501737	+	370	197285279	-	PMI1420	-	hypothetical protein
1365	 42.63	0	1502191..1504566	-	791	197285280	ppsA	PMI1421	-	phosphoenolpyruvate synthase
1366	 36.45	0	1504785..1505651	+	288	197285281	-	PMI1422	-	hypothetical protein
1367	 42.10	0	1505772..1506821	+	349	197285282	aroH	PMI1423	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1368	 32.79	-1	1507078..1507260	+	60	197285283	-	PMI1424	-	hemin uptake protein
1369	 37.27	0	1507335..1509569	+	744	197285284	hmuR1	PMI1425	-	hemin receptor
1370	 40.97	0	1509649..1511691	+	680	197285285	hmuR2	PMI1426	-	hemin receptor
1371	 39.19	0	1511685..1512776	+	363	197285286	hmuS	PMI1427	-	hemin transport protein
1372	 40.44	0	1512792..1513607	+	271	197285287	hmuT	PMI1428	-	hemin-binding periplasmic protein
1373	 40.80	0	1513607..1514611	+	334	197285288	hmuU	PMI1429	-	hemin transport system permease protein HmuU
1374	 40.91	0	1514572..1515402	+	276	197285289	hmuV	PMI1430	-	hemin transport system ATP-binding protein
1375	 39.32	0	1515512..1515979	-	155	197285290	-	PMI1431	-	AsnC-family transcriptional regulator
1376	 37.42	0	1516140..1516751	+	203	197285291	-	PMI1432	-	LysE-type transporter
1377	 41.03	0	1516834..1518249	-	471	197285292	-	PMI1433	-	GntR-family transcriptional regulator
1378	 40.22	0	1518398..1519732	+	444	197285293	-	PMI1434	-	cytochrome oxidase subunit I
1379	 40.48	0	1519722..1520729	+	335	197285294	-	PMI1435	-	cytochrome oxidase subunit II
1380	 38.27	0	1520710..1520871	+	53	197285295	-	PMI1436	-	hypothetical protein
1381	 43.09	0	1521159..1522019	+	286	197285296	-	PMI1437	-	iron utilization protein
1382	 35.16	0	1522540..1522923	+	127	197285297	-	PMI1438	-	hypothetical protein
1383	 37.91	0	1523193..1523978	-	261	197285298	phoH	PMI1439	-	PhoH protein (phosphate starvation-inducible protein PsiH)
1384	 38.51	0	1524325..1524768	+	147	197285299	-	PMI1440	-	hypothetical protein
1385	 40.80	0	1524779..1525756	-	325	197285300	endA	PMI1441	-	endonuclease I precursor
1386	 29.71	-2	1525918..1526193	+	91	197285301	-	PMI1442	-	hypothetical protein
1387	 39.45	0	1526199..1526672	-	157	197285302	-	PMI1443	-	hypothetical protein
1388	 40.55	0	1526663..1527466	-	267	197285303	-	PMI1444	-	hypothetical protein
1389	 31.16	-1	1527656..1528483	-	275	197285304	-	PMI1445	-	hypothetical protein
1390	 33.06	-1	1528470..1529564	-	364	197285305	-	PMI1446	-	hypothetical protein
1391	 38.20	0	1529768..1530178	-	136	197285306	-	PMI1447	-	hypothetical protein
1392	 30.80	-1	1530498..1531169	+	223	197285307	-	PMI1448	-	lipoprotein
1393	 37.21	0	1531297..1531734	-	145	197285308	uspG1	PMI1449	-	universal stress protein G
1394	 35.99	0	1531801..1532139	-	112	197285309	-	PMI1450	-	hypothetical protein
1395	 39.39	0	1532255..1532683	-	142	197285310	uspG2	PMI1451	-	universal stress protein G
1396	 43.66	0	1532830..1533720	-	296	197285311	-	PMI1452	-	hypothetical protein
1397	 36.94	0	1534011..1534232	+	73	197285312	-	PMI1453	-	hypothetical protein
1398	 36.00	0	1534499..1534873	+	124	197285313	-	PMI1454	-	hypothetical protein
1399	 43.66	0	1535091..1536068	+	325	197285314	hemB	PMI1455	-	delta-aminolevulinic acid dehydratase
1400	 39.78	0	1536223..1536687	+	154	197285315	-	PMI1456	-	hypothetical protein
1401	 40.53	0	1536773..1538050	-	425	197285316	codA	PMI1457	-	cytosine deaminase
1402	 43.25	0	1538040..1539290	-	416	197285317	codB	PMI1458	-	cytosine permease
1403	 43.65	0	1539677..1541344	-	555	197285318	betA	PMI1459	-	choline dehydrogenase
1404	 43.56	0	1541390..1542865	-	491	197285319	betB	PMI1460	-	betaine aldehyde dehydrogenase
1405	 41.79	0	1542890..1543492	-	200	197285320	betI	PMI1461	-	TetR-family transcriptional regulator
1406	 39.65	0	1543702..1545744	+	680	197285321	betT	PMI1462	-	high-affinity choline transport protein
1407	 39.81	0	1546004..1547161	+	385	197285322	-	PMI1463	-	aminotransferase
1408	 32.08	-1	1547222..1547779	-	185	197285323	-	PMI1464	-	fimbrial subunit
1409	 34.01	-1	1547798..1548832	-	344	197285324	-	PMI1465	-	fimbrial adhesin
1410	 31.11	-1	1548820..1551423	-	867	197285325	-	PMI1466	-	fimbrial outer membrane usher protein
1411	 31.02	-1	1551457..1552149	-	230	197285326	-	PMI1467	-	fimbrial chaperone protein
1412	 28.36	-2	1552174..1552716	-	180	197285327	-	PMI1468	-	fimbrial subunit
1413	 35.29	0	1552778..1553338	-	186	197285328	-	PMI1469	-	fimbrial subunit
1414	 23.51	-2	1553584..1553919	-	111	197285329	-	PMI1470	-	fimbrial operon regulator
1415	 42.36	0	1554709..1555716	-	335	197285330	oppF	PMI1471	-	oligopeptide ABC transporter, ATP-binding protein
1416	 42.73	0	1555713..1556702	-	329	197285331	oppD	PMI1472	-	oligopeptide ABC transporter, ATP-binding protein
1417	 42.13	0	1556710..1557618	-	302	197285332	oppC	PMI1473	-	oligopeptide ABC transporter, permease protein
1418	 40.50	0	1557637..1558557	-	306	197285333	oppB	PMI1474	-	oligopeptide ABC transporter, permease protein
1419	 39.01	0	1558636..1560273	-	545	197285334	oppA	PMI1475	-	oligopeptide ABC transporter, oligopeptide-binding protein
1420	 39.31	0	1560540..1562180	-	546	197285335	oppA2	PMI1476	-	oligopeptide ABC transporter, oligopeptide-binding protein
1421	 43.38	0	1562831..1564213	-	460	197285336	cysG	PMI1477	-	siroheme synthase [includes: uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase]
1422	 43.84	0	1564239..1564571	-	110	197285337	nirD	PMI1478	-	nitrite reductase [NAD(P)H] small subunit
1423	 43.27	0	1564568..1567114	-	848	197285338	nirB	PMI1479	-	nitrite reductase [NAD(P)H] large subunit
1424	 41.54	0	1567443..1569014	+	523	197285339	-	PMI1480	-	ABC transporter, substrate binding protein
1425	 41.79	0	1569089..1570129	+	346	197285340	-	PMI1481	-	ABC transporter, permease protein
1426	 45.37	+1	1570129..1570959	+	276	197285341	-	PMI1482	-	ABC transporter, permease protein
1427	 42.65	0	1570952..1571788	+	278	197285342	-	PMI1483	-	ABC transporter, ATP-binding protein
1428	 39.08	0	1571778..1572491	+	237	197285343	-	PMI1484	-	ABC transporter, ATP-binding protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.