IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.69   STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1242	 38.02	0	1373662..1374621	-	319	197285157	-	PMI1298	-	hypothetical protein
1243	 21.15	-2	1374672..1374827	-	51	197285158	-	PMI1299	-	hypothetical protein
1244	 42.32	0	1375181..1376182	+	333	197285159	add	PMI1300	-	adenosine deaminase
1245	 40.26	0	1376241..1377236	-	331	197285160	-	PMI1301	-	hypothetical protein
1246	 40.71	0	1377259..1378302	-	347	197285161	-	PMI1302	-	oxidoreductase
1247	 37.82	0	1378435..1378902	+	155	197285162	-	PMI1303	-	hypothetical protein
1248	 39.52	0	1378996..1379577	+	193	197285163	rnfA	PMI1304	-	electron transport complex protein
1249	 43.22	0	1379577..1380203	+	208	197285164	rnfB	PMI1305	-	electron transport complex protein
1250	 45.20	+1	1380196..1382715	+	839	197285165	rnfC	PMI1306	-	electron transport complex protein
1251	 41.50	0	1382721..1383797	+	358	197285166	rnfD	PMI1307	-	electron transport complex protein
1252	 40.69	0	1383797..1384435	+	212	197285167	rnfG	PMI1308	-	electron transport complex protein
1253	 38.72	0	1384437..1385141	+	234	197285168	rnfE	PMI1309	-	electron transport complex protein
1254	 40.53	0	1385154..1385792	+	212	197285169	nth	PMI1310	-	endonuclease III
1255	 42.49	0	1385905..1387848	+	647	197285170	rnb	PMI1311	-	exoribonuclease II
1256	 41.67	0	1388071..1388394	-	107	197285171	-	PMI1312	-	translation initiaiton factor
1257	 45.92	+1	1388387..1389133	-	248	197285172	pyrF	PMI1313	-	orotidine-5'-phosphate decarboxylase
1258	 43.25	0	1389177..1390346	-	389	197285173	-	PMI1314	-	hypothetical protein
1259	 37.74	0	1390359..1390676	-	105	197285174	-	PMI1315	-	hypothetical protein
1260	 40.69	0	1390835..1391554	-	239	197285175	pgpB	PMI1316	-	phosphatidylglycerophosphatase B
1261	 38.00	0	1391833..1392432	+	199	197285176	ribA	PMI1317	-	GTP cyclohydrolase II
1262	 38.24	0	1392662..1393477	+	271	197285177	nlpA	PMI1318	-	lipoprotein-28
1263	 29.53	-2	1393532..1395004	-	490	197285178	-	PMI1319	-	transferase
1264	 42.80	0	1395199..1397871	-	890	197285179	acnA	PMI1320	-	aconitate hydratase 1
1265	 33.69	-1	1398087..1398926	+	279	197285180	-	PMI1321	-	hypothetical protein
1266	 40.21	0	1398986..1399960	-	324	197285181	cysB	PMI1322	-	cys regulon transcriptional activator (LysR-family transcriptional regulator)
1267	 33.33	-1	1400111..1400302	-	63	197285182	-	PMI1323	-	hypothetical protein
1268	 31.86	-1	1400402..1401148	-	248	197285183	-	PMI1324	-	lipoprotein
1269	 29.87	-2	1401253..1402002	-	249	197285184	-	PMI1325	-	lipoprotein
1270	 31.73	-1	1402106..1402855	-	249	197285185	-	PMI1326	-	lipoprotein
1271	 31.33	-1	1402960..1403709	-	249	197285186	-	PMI1327	-	lipoprotein
1272	 31.08	-1	1403814..1404566	-	250	197285187	-	PMI1328	-	lipoprotein
1273	 33.86	-1	1404547..1406457	-	636	197285188	-	PMI1329	-	lipase
1274	 36.01	0	1406479..1407264	-	261	197285189	-	PMI1330	-	regulatory protein
1275	 38.45	0	1407264..1409237	-	657	197285190	-	PMI1331	-	VgrG-like protein
1276	 41.30	0	1409271..1409546	-	91	197285191	-	PMI1332	-	hypothetical protein
1277	 43.24	0	1410453..1410977	-	174	197285192	sodC	PMI1333	-	copper-zinc superoxide dismutase
1278	 42.88	0	1411151..1413748	-	865	197285193	topA	PMI1334	-	DNA topoisomerase I
1279	 36.51	0	1414051..1414302	+	83	197285194	-	PMI1335	-	hypothetical protein
1280	 40.02	0	1414635..1415681	-	348	197285195	sohB	PMI1336	-	probable protease
1281	 42.75	0	1415892..1416656	+	254	197285196	-	PMI1337	-	short chain dehydrogenase
1282	 40.78	0	1416680..1417270	+	196	197285197	btuR	PMI1338	-	cobalamin adenosyltransferase
1283	 31.54	-1	1417323..1418270	-	315	197285198	-	PMI1339	-	lipoprotein
1284	 44.88	+1	1418468..1419394	-	308	197285199	rluB	PMI1340	-	ribosomal large subunit pseudouridine synthase B
1285	 38.33	0	1419761..1420381	-	206	197285200	-	PMI1341	-	dsRNA-binding protein
1286	 43.09	0	1420406..1421266	-	286	197285201	trpH	PMI1342	-	hypothetical protein
1287	 41.06	0	1421585..1423162	+	525	197285202	trpE	PMI1343	-	anthranilate synthase component I
1288	 43.83	0	1423156..1423755	+	199	197285203	trpD	PMI1344	-	anthranilate synthase component (glutamine amidotransferase)
1289	 44.04	0	1423757..1424755	+	332	197285204	trpD'	PMI1345	-	anthranilate synthase component (anthranilate phosphoribosyltransferase)
1290	 39.01	0	1424761..1426134	+	457	197285205	trpC	PMI1346	-	tryptophan biosynthesis protein [includes: indole-3-glycerol phosphate synthase; N-(5'-phospho-ribosyl)anthranilate isomerase]
1291	 43.74	0	1426151..1427341	+	396	197285206	trpB	PMI1347	-	tryptophan synthase beta chain
1292	 41.60	0	1427341..1428150	+	269	197285207	trpA	PMI1348	-	tryptophan synthase alpha chain
1293	 40.32	0	1428421..1428735	+	104	197285208	-	PMI1349	-	lipoprotein
1294	 38.16	0	1429387..1430028	-	213	197285209	ompW	PMI1350	-	outer membrane protein
1295	 37.40	0	1430472..1431233	+	253	197285210	-	PMI1351	-	hypothetical protein
1296	 40.22	0	1431366..1433150	-	594	197285211	-	PMI1352	-	sulfate transporter
1297	 36.24	0	1433456..1434109	+	217	197285212	ispZ	PMI1353	-	probable intracellular septation protein
1298	 42.59	0	1434183..1434614	+	143	197285213	-	PMI1354	-	acyl-CoA thioester hydrolase
1299	 45.87	+1	1434713..1435438	-	241	197285214	tonB	PMI1355	-	TonB protein
1300	 45.56	+1	1435554..1435733	-	59	197285215	-	PMI1356	-	hypothetical protein
1301	 41.55	0	1436041..1437501	+	486	197285216	cls	PMI1357	-	cardiolipin synthetase
1302	 39.70	0	1437609..1437938	+	109	197285217	-	PMI1358	-	hypothetical protein
1303	 30.91	-1	1438086..1438622	-	178	197285218	-	PMI1359	-	outer membrane protein (attachment invasion locus protein)
1304	 36.92	0	1438975..1439364	+	129	197285219	-	PMI1360	-	hypothetical protein
1305	 30.36	-1	1439453..1439755	-	100	197285220	-	PMI1361	-	hypothetical protein
1306	 38.23	0	1440211..1440864	+	217	197285221	-	PMI1362	-	transport protein
1307	 38.76	0	1441215..1442135	+	306	197285222	-	PMI1363	-	hypothetical protein
1308	 41.16	0	1442450..1443433	-	327	197285223	-	PMI1364	-	transport protein
1309	 37.24	0	1443798..1444130	+	110	197285224	-	PMI1365	-	lipoprotein
1310	 33.87	-1	1444423..1444983	+	186	197285225	-	PMI1366	-	hypothetical protein
1311	 38.77	0	1445339..1446958	-	539	197285226	mppA	PMI1367	-	periplasmic murein peptide-binding protein precursor
1312	 39.48	0	1447184..1447687	+	167	197285227	tpx	PMI1368	-	thiol peroxidase
1313	 36.53	0	1447787..1449352	-	521	197285228	tyrR	PMI1369	-	transcriptional regulator
1314	 27.19	-2	1449489..1449911	-	140	197285229	-	PMI1370	-	hypothetical protein
1315	 39.45	0	1450376..1451422	-	348	197285230	-	PMI1371	-	hypothetical protein
1316	 40.36	0	1451419..1452813	-	464	197285231	-	PMI1372	-	ATP-binding protein
1317	 38.37	0	1452794..1453051	-	85	197285232	pspD	PMI1373	-	phage shock protein D
1318	 36.41	0	1453136..1453492	-	118	197285233	pspC	PMI1374	-	phage shock protein C
1319	 40.69	0	1453492..1453722	-	76	197285234	pspB	PMI1375	-	phage shock protein B
1320	 38.57	0	1453759..1454427	-	222	197285235	pspA	PMI1376	-	phage shock protein A
1321	 43.68	0	1454644..1455648	+	334	197285236	pspF	PMI1377	-	psp operon transcriptional activator
1322	 40.37	0	1455927..1457618	+	563	197285237	sapA	PMI1378	-	peptide transport periplasmic protein
1323	 41.20	0	1457615..1458580	+	321	197285238	sapB	PMI1379	-	peptide transport system permease protein
1324	 41.28	0	1458567..1459460	+	297	197285239	sapC	PMI1380	-	peptide transport system permease protein
1325	 42.61	0	1459460..1460461	+	333	197285240	sapD	PMI1381	-	peptide transport system ATP-binding protein
1326	 40.37	0	1460451..1461260	+	269	197285241	sapF	PMI1382	-	peptide transport system ATP-binding protein
1327	 42.08	0	1461469..1462257	+	262	197285242	fabI	PMI1383	-	enoyl-[acyl-carrier-protein] reductase (NADH)
1328	 39.71	0	1462476..1463087	+	203	197285243	gst	PMI1384	-	glutathione S-transferase
1329	 42.87	0	1463166..1464035	-	289	197285244	pdxY	PMI1385	-	pyridoxamine kinase
1330	 42.04	0	1464156..1465442	-	428	197285245	tyrS	PMI1386	-	tyrosyl-tRNA synthetase
1331	 38.99	0	1465561..1466214	-	217	197285246	pdxH	PMI1387	-	pyridoxamine 5'-phosphate oxidase
1332	 43.58	0	1466258..1467370	-	370	197285247	-	PMI1388	-	hypothetical protein
1333	 43.38	0	1467591..1468058	+	155	197285248	slyB	PMI1389	-	outer membrane lipoprotein
1334	 33.57	-1	1468403..1468831	-	142	197285249	slyA	PMI1390	-	MarR-family transcriptional regulator
1335	 36.25	0	1469294..1469533	-	79	197285250	-	PMI1391	-	hypothetical protein
1336	 42.65	0	1469714..1470121	+	135	197285251	gloA	PMI1392	-	lactoylglutathione lyase
1337	 41.00	0	1470217..1470855	+	212	197285252	rnt	PMI1393	-	ribonuclease T
1338	 40.12	0	1470977..1471315	-	112	197285253	-	PMI1394	-	glutaredoxin
1339	 34.82	0	1471720..1472055	-	111	197285254	-	PMI1395	-	hypothetical protein
1340	 38.85	0	1472352..1473167	+	271	197285255	-	PMI1396	-	hypothetical protein
1341	 38.34	0	1473407..1473985	+	192	197285256	sodB	PMI1397	-	superoxide dismutase [Fe]
39.69	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.