IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1126	 39.12	0	1239665..1241218	+	517	197285041	-	PMI1180	-	methyl-accepting chemotaxis protein
1127	 40.84	0	1241347..1242345	-	332	197285042	ldhA	PMI1181	-	D-lactate dehydrogenase
1128	 40.69	0	1242504..1245140	+	878	197285043	-	PMI1182	-	hypothetical protein
1129	 30.39	-1	1245140..1245343	+	67	197285044	-	PMI1183	-	lipoprotein
1130	 37.54	0	1245358..1245690	+	110	197285045	-	PMI1184	-	hypothetical protein
1131	 29.57	-2	1245769..1246353	-	194	197285046	-	PMI1185	-	fimbrial subunit
1132	 29.11	-2	1246395..1248809	-	804	197285047	-	PMI1186	-	outer membrane fimbrial usher protein
1133	 24.79	-2	1248802..1249503	-	233	197285048	-	PMI1187	-	fimbrial chaperone
1134	 36.26	0	1249629..1250174	-	181	197285049	-	PMI1188	-	fimbrial subunit
1135	 35.32	0	1251058..1251612	-	184	197285050	-	PMI1190	-	fimbrial subunit
1136	 34.46	-1	1251902..1252522	-	206	197285051	acpD	PMI1191	-	acyl carrier protein phosphodiesterase
1137	 39.75	0	1252744..1256640	+	1298	197285052	hrpA	PMI1192	-	ATP-dependent helicase
1138	 24.53	-2	1256699..1257016	-	105	197285053	-	PMI1193	-	hypothetical protein
1139	 28.16	-2	1257029..1258033	-	334	197285054	-	PMI1194	-	fimbrial subunit
1140	 27.40	-2	1258043..1260436	-	797	197285055	-	PMI1195	-	outer membrane fimbrial usher protein
1141	 25.93	-2	1260445..1261119	-	224	197285056	-	PMI1196	-	fimbrial chaparone
1142	 28.92	-2	1261147..1261713	-	188	197285057	-	PMI1197	-	fimbrial subunit
1143	 38.28	0	1262202..1263596	-	464	197285058	ydgI	PMI1198	-	arginine/ornithine antiporter
1144	 40.46	0	1263865..1264818	-	317	197285059	-	PMI1199	-	hypothetical protein
1145	 41.63	0	1265206..1266735	+	509	197285060	pntA	PMI1200	-	NAD(P) transhydrogenase subunit alpha (pyridine nucleotide transhydrogenase subunit alpha)
1146	 41.11	0	1266747..1268135	+	462	197285061	pntB	PMI1201	-	NAD(P) transhydrogenase subunit beta (pyridine nucleotide transhydrogenase subunit beta)
1147	 39.96	0	1268218..1269168	-	316	197285062	uspE	PMI1202	-	universal stress protein E
1148	 41.24	0	1269311..1270069	-	252	197285063	fnr	PMI1203	-	fumarate and nitrate reduction regulatory protein
1149	 40.63	0	1270635..1273031	+	798	197285064	-	PMI1204	-	dimethyl sulfoxide reductase chain A precursor
1150	 38.89	0	1273028..1273657	+	209	197285065	-	PMI1205	-	anaerobic dimethyl sulfoxide reductase chain B
1151	 36.66	0	1273654..1274526	+	290	197285066	-	PMI1206	-	anaerobic dimethyl sulfoxide reductase chain C
1152	 38.53	0	1274547..1275431	+	294	197285067	-	PMI1207	-	ferredoxin
1153	 39.28	0	1275562..1276587	+	341	197285068	-	PMI1208	-	probable zinc-binding dehydrogenase
1154	 36.27	0	1277098..1278933	+	611	197285069	disA	PMI1209	-	tyrosine decarboxylase
1155	 40.32	0	1279291..1280106	+	271	197285070	-	PMI1210	-	PadR-family transcriptional regulator
1156	 34.62	-1	1280099..1280254	+	51	197285071	-	PMI1211	-	hypothetical protein
1157	 38.84	0	1280536..1281243	+	235	197285072	-	PMI1212	-	hypothetical protein
1158	 40.60	0	1281536..1282099	+	187	197285073	ahpC	PMI1213	-	alkyl hydroperoxide reductase subunit C
1159	 41.32	0	1282192..1283757	+	521	197285074	ahpF	PMI1214	-	alkyl hydroperoxide reductase subunit F
1160	 34.94	0	1284070..1285062	+	330	197285075	-	PMI1215	-	hypothetical protein
1161	 29.19	-2	1285324..1285806	+	160	197285076	-	PMI1216	-	hypothetical protein
1162	 36.02	0	1285965..1286447	+	160	197285077	-	PMI1217	-	acetyltransferase
1163	 36.19	0	1286640..1287548	+	302	197285078	-	PMI1218	-	efflux protein
1164	 23.61	-2	1287671..1289131	+	486	197285079	-	PMI1219	-	hypothetical protein
1165	 37.53	0	1289203..1290654	+	483	197285080	amn	PMI1220	-	AMP nucleosidase
1166	 41.59	0	1290737..1291729	-	330	197285081	-	PMI1221	-	integrase/recombinase
1167	 40.46	0	1292037..1293074	-	345	197285082	-	PMI1222	-	exported L-asparaginase
1168	 42.92	0	1293788..1294861	+	357	197285083	-	PMI1223	-	HlyD-family secretion protein
1169	 41.17	0	1294858..1297626	+	922	197285084	-	PMI1224	-	ABC-type multidrug transport system
1170	 40.07	0	1297627..1298754	+	375	197285085	-	PMI1225	-	ABC-2 type transporter
1171	 40.06	0	1298782..1299465	-	227	197285086	kdpE	PMI1226	-	two-component response regulator of kdp operon
1172	 41.07	0	1299462..1302164	-	900	197285087	kdpD	PMI1227	-	two-component sensor kinase
1173	 29.20	-2	1302685..1303119	+	144	197285088	-	PMI1229	-	hypothetical protein
1174	 37.37	0	1303138..1304625	+	495	197285089	-	PMI1230	-	hypothetical protein
1175	 41.77	0	1304759..1305754	+	331	197285090	dhaK1	PMI1231	-	dihydroxyacetone kinase (glycerone kinase), kinase subunit
1176	 39.71	0	1305754..1306365	+	203	197285091	dhaK2	PMI1232	-	dihydroxyacetone kinase, phosphatase subunit
1177	 38.93	0	1306389..1307300	+	303	197285092	-	PMI1233	-	dihydrodipicolinate synthase
1178	 37.96	0	1307395..1308366	-	323	197285093	-	PMI1234	-	pyridoxal-phosphate dependent
1179	 37.09	0	1308363..1308761	-	132	197285094	-	PMI1235	-	endoribonuclease
1180	 38.74	0	1309076..1309834	-	252	197285095	-	PMI1236	-	acetyltransferase
1181	 34.41	-1	1310674..1311321	+	215	197285096	-	PMI1237	-	transport protein
1182	 37.54	0	1311426..1312043	+	205	197285097	-	PMI1238	-	pyridoxamine 5'-phosphate oxidase
1183	 36.76	0	1312164..1312775	+	203	197285098	-	PMI1239	-	probable base excision DNA repair protein
1184	 38.66	0	1312855..1313718	+	287	197285099	ada	PMI1240	-	regulatory protein of adaptative response [contains: methylated-DNA--protein-cysteine methyltransferase]
1185	 29.39	-2	1313763..1314092	+	109	197285100	-	PMI1241	-	hypothetical protein
1186	 37.06	0	1314187..1315929	-	580	197285101	-	PMI1242	-	ABC transporter ATP-binding protein
1187	 35.88	0	1316402..1317502	+	366	197285102	ddlA	PMI1243	-	D-alanine:D-alanine ligase A
1188	 37.24	0	1317538..1317921	+	127	197285103	-	PMI1244	-	hydrolase
1189	 33.85	-1	1318167..1318556	+	129	197285104	-	PMI1245	-	hypothetical protein
1190	 28.93	-2	1318746..1319267	+	173	197285105	-	PMI1246	-	hypothetical protein
1191	 36.20	0	1319484..1320284	+	266	197285106	metQ	PMI1247	-	probable D-methionine-binding lipoprotein
1192	 38.08	0	1320420..1321703	+	427	197285107	-	PMI1248	-	methionine gamma-lyase
1193	 36.81	0	1321773..1322318	-	181	197285108	-	PMI1249	-	acetyltransferase
1194	 33.92	-1	1322515..1323360	+	281	197285109	-	PMI1250	-	transcriptional regulator
1195	 36.46	0	1323367..1324551	-	394	197285110	-	PMI1251	-	MFS-family transporter
1196	 39.67	0	1324814..1325776	+	320	197285111	accA	PMI1252	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
1197	 38.40	0	1325849..1326736	+	295	197285112	-	PMI1253	-	LysR-family transcriptional regulator
1198	 38.39	0	1326740..1328242	-	500	197285113	-	PMI1254	-	MFS-family transporter
1199	 37.19	0	1328397..1328993	+	198	197285114	-	PMI1255	-	TetR-family transcriptional regulator
1200	 24.78	-2	1329427..1330431	+	334	197285115	-	PMI1256	-	hypothetical protein
1201	 39.40	0	1330564..1332162	-	532	197285116	-	PMI1257	-	ABC transporter ATP-binding protein
1202	 41.67	0	1332413..1332868	+	151	197285117	-	PMI1258	-	hypothetical protein
1203	 39.61	0	1332925..1334325	+	466	197285118	-	PMI1259	-	probable amidohydrolase
1204	 32.82	-1	1334399..1335370	-	323	197285119	-	PMI1260	-	LysR-family transcriptional regulator
1205	 31.90	-1	1335363..1336547	-	394	197285120	-	PMI1261	-	MFS-family transporter
1206	 41.51	0	1336739..1337827	-	362	197285121	-	PMI1262	-	ATP-binding protein
1207	 31.91	-1	1338131..1338412	+	93	197285122	-	PMI1263	-	hypothetical protein
1208	 37.94	0	1338416..1339456	+	346	197285123	-	PMI1264	-	HlyD-family secretion protein (multidrug resistance protein)
1209	 35.00	0	1339443..1341299	+	618	197285124	-	PMI1265	-	multidrug resistance protein
1210	 39.44	0	1341299..1342771	+	490	197285125	-	PMI1266	-	channel-forming component of a multidrug resistance efflux pump
1211	 37.84	0	1342829..1343227	+	132	197285126	-	PMI1267	-	hypothetical protein
1212	 39.84	0	1343319..1344671	+	450	197285127	-	PMI1268	-	ATP-binding/heat shock protein
1213	 39.38	0	1344809..1345834	+	341	197285128	-	PMI1269	-	beta-eliminating lyase
1214	 42.42	0	1346007..1346270	+	87	197285129	-	PMI1270	-	hypothetical protein
1215	 33.67	-1	1346630..1347229	+	199	197285130	-	PMI1271	-	LysE-family transporter
1216	 42.68	0	1347291..1348745	-	484	197285131	xylB	PMI1272	-	xylulose kinase
1217	 39.94	0	1348824..1350140	-	438	197285132	xylA	PMI1273	-	xylose isomerase
1218	 42.75	0	1350151..1351626	-	491	197285133	-	PMI1274	-	Na+/H+ antiporter
1219	 35.98	0	1351633..1352802	-	389	197285134	-	PMI1275	-	aminotransferase
1220	 37.01	0	1352991..1354160	+	389	197285135	xylR	PMI1276	-	xylose operon regulator (AraC-family transcriptional regulator)
1221	 37.54	0	1354173..1354457	-	94	197285136	-	PMI1277	-	hypothetical protein
1222	 35.86	0	1354562..1355629	-	355	197285137	-	PMI1278	-	hypothetical protein
1223	 34.29	-1	1355851..1356165	+	104	197285138	-	PMI1279	-	hypothetical protein
1224	 37.61	0	1356199..1356900	+	233	197285139	-	PMI1280	-	ArsR-family transcriptional regulator
1225	 28.82	-2	1356937..1357401	-	154	197285140	-	PMI1281	-	hypothetical protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.