IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1070	 44.25	0	1182894..1183415	+	173	197284985	ruvC	PMI1114	-	Holliday junction nuclease
1071	 42.15	0	1183518..1184141	+	207	197284986	ruvA	PMI1115	-	Holliday junction ATP-dependent DNA helicase
1072	 43.92	0	1184154..1185164	+	336	197284987	ruvB	PMI1116	-	Holliday junction ATP-dependent DNA helicase
1073	 48.17	+1	1185979..1186497	+	172	197284988	hcp	PMI1117	-	hypothetical protein
1074	 48.07	+1	1186581..1188683	+	700	197284989	-	PMI1118	-	Rhs-family protein
1075	 42.90	0	1188696..1189751	+	351	197284990	-	PMI1119	-	hypothetical protein
1076	 43.08	0	1189744..1194855	+	1703	197284991	-	PMI1120	-	Rhs-family protein
1077	 25.16	-2	1194871..1195482	+	203	197284992	-	PMI1121	-	hypothetical protein
1078	 26.67	-2	1195540..1195719	+	59	197284993	-	PMI1122	-	hypothetical protein
1079	 29.51	-2	1195694..1195876	+	60	197284994	-	PMI1123	-	hypothetical protein
1080	 25.23	-2	1195873..1196193	+	106	197284995	-	PMI1124	-	hypothetical protein
1081	 43.74	0	1196255..1197397	+	380	197284996	-	PMI1125	-	Rhs-family protein
1082	 29.09	-2	1197400..1197729	+	109	197284997	-	PMI1126	-	hypothetical protein
1083	 44.44	0	1197795..1197947	+	50	197284998	-	PMI1127	-	hypothetical protein
1084	 26.04	-2	1199654..1199941	+	95	197284999	-	PMI1129	-	hypothetical protein
1085	 36.43	0	1199975..1200103	+	42	197285000	-	PMI1130	-	hypothetical protein
1086	 29.63	-2	1201193..1201732	+	179	197285001	-	PMI1132	-	hypothetical protein
1087	 35.53	0	1202583..1202900	+	105	197285002	-	PMI1135	-	hypothetical protein
1088	 32.48	-1	1202903..1203370	+	155	197285003	-	PMI1136	-	hypothetical protein
1089	 23.58	-2	1204565..1204933	+	122	197285004	-	PMI1139	-	hypothetical protein
1090	 30.45	-1	1205946..1206257	+	103	197285005	-	PMI1141	-	hypothetical protein
1091	 31.27	-1	1208268..1208558	+	96	197285006	-	PMI1144	-	ribonuclease inhibitor
1092	 25.47	-2	1208895..1209212	+	105	197285007	-	PMI1145	-	hypothetical protein
1093	 40.11	0	1209300..1209476	-	58	197285008	-	PMI1146	-	hypothetical protein
1094	 31.18	-1	1209647..1209832	+	61	197285009	-	PMI1147	-	hypothetical protein
1095	 36.16	0	1209999..1210352	+	117	197285010	-	PMI1148	-	hypothetical protein
1096	 42.88	0	1210670..1211455	-	261	197285011	znuB	PMI1150	-	high-affinity zinc uptake system membrane protein
1097	 39.12	0	1211448..1212173	-	241	197285012	znuC	PMI1151	-	high-affinity zinc uptake system ATP-binding protein
1098	 37.57	0	1212248..1213192	+	314	197285013	znuA	PMI1152	-	high-affinity zinc uptake system substrate-binding protein
1099	 42.81	0	1213205..1214533	+	442	197285014	-	PMI1153	-	peptidase
1100	 43.28	0	1214640..1215614	+	324	197285015	msbB	PMI1154	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
1101	 43.10	0	1215704..1217146	-	480	197285016	pykA	PMI1155	-	pyruvate kinase II
1102	 39.98	0	1217377..1218219	-	280	197285017	hexR	PMI1156	-	hex regulon repressor (RpiR-family transcriptional regulator)
1103	 40.51	0	1218574..1220049	+	491	197285018	zwf	PMI1157	-	glucose-6-phosphate 1-dehydrogenase
1104	 36.96	0	1220632..1221072	+	146	197285019	mdtJ	PMI1158	-	multidrug resistance protein
1105	 39.34	0	1221074..1221406	+	110	197285020	mdtI	PMI1159	-	multidrug resistance protein
1106	 28.79	-2	1221564..1221695	+	43	197285021	-	PMI1160	-	hypothetical protein
1107	 33.45	-1	1221697..1222560	+	287	197285022	-	PMI1161	-	hypothetical protein
1108	 40.00	0	1222590..1222934	-	114	197285023	-	PMI1162	-	endoribonuclease
1109	 42.26	0	1223020..1224957	+	645	197285024	-	PMI1163	-	ATP-dependent helicase
1110	 45.73	+1	1225051..1225752	+	233	197285025	rpf	PMI1164	-	resuscitation-promoting factor (glycoprotease)
1111	 42.42	0	1225843..1226436	+	197	197285026	-	PMI1165	-	lipoprotein
1112	 41.44	0	1226739..1228427	+	562	197285027	fadD	PMI1166	-	long-chain-fatty-acid-CoA ligase
1113	 41.11	0	1228527..1229645	+	372	197285028	rnd	PMI1167	-	ribonuclease D
1114	 38.89	0	1229919..1230188	-	89	197285029	minE	PMI1168	-	cell division topological specificity factor
1115	 40.34	0	1230192..1231004	-	270	197285030	minD	PMI1169	-	septum site-determining protein
1116	 39.89	0	1231027..1231728	-	233	197285031	minC	PMI1170	-	septum site-determining protein
1117	 34.69	-1	1231856..1232149	+	97	197285032	-	PMI1171	-	hypothetical protein
1118	 42.11	0	1232174..1233301	+	375	197285033	-	PMI1172	-	lipoprotein
1119	 42.47	0	1233355..1234011	+	218	197285034	-	PMI1173	-	fumarylacetoacetate hydrolase
1120	 39.86	0	1234045..1234488	+	147	197285035	-	PMI1174	-	hypothetical protein
1121	 35.93	0	1234533..1235303	-	256	197285036	-	PMI1175	-	hypothetical protein
1122	 34.56	-1	1235369..1236019	-	216	197285037	-	PMI1176	-	ABC transporter, ATP-binding protein
1123	 34.20	-1	1236311..1237234	-	307	197285038	-	PMI1177	-	hypothetical protein
1124	 36.94	0	1237353..1238267	-	304	197285039	-	PMI1178	-	AraC-family transcriptional regulator
1125	 35.04	0	1238341..1238985	+	214	197285040	-	PMI1179	-	TetR-family transcriptional regulator
1126	 39.12	0	1239665..1241218	+	517	197285041	-	PMI1180	-	methyl-accepting chemotaxis protein
1127	 40.84	0	1241347..1242345	-	332	197285042	ldhA	PMI1181	-	D-lactate dehydrogenase
1128	 40.69	0	1242504..1245140	+	878	197285043	-	PMI1182	-	hypothetical protein
1129	 30.39	-1	1245140..1245343	+	67	197285044	-	PMI1183	-	lipoprotein
1130	 37.54	0	1245358..1245690	+	110	197285045	-	PMI1184	-	hypothetical protein
1131	 29.57	-2	1245769..1246353	-	194	197285046	-	PMI1185	-	fimbrial subunit
1132	 29.11	-2	1246395..1248809	-	804	197285047	-	PMI1186	-	outer membrane fimbrial usher protein
1133	 24.79	-2	1248802..1249503	-	233	197285048	-	PMI1187	-	fimbrial chaperone
1134	 36.26	0	1249629..1250174	-	181	197285049	-	PMI1188	-	fimbrial subunit
1135	 35.32	0	1251058..1251612	-	184	197285050	-	PMI1190	-	fimbrial subunit
1136	 34.46	-1	1251902..1252522	-	206	197285051	acpD	PMI1191	-	acyl carrier protein phosphodiesterase
1137	 39.75	0	1252744..1256640	+	1298	197285052	hrpA	PMI1192	-	ATP-dependent helicase
1138	 24.53	-2	1256699..1257016	-	105	197285053	-	PMI1193	-	hypothetical protein
1139	 28.16	-2	1257029..1258033	-	334	197285054	-	PMI1194	-	fimbrial subunit
1140	 27.40	-2	1258043..1260436	-	797	197285055	-	PMI1195	-	outer membrane fimbrial usher protein
1141	 25.93	-2	1260445..1261119	-	224	197285056	-	PMI1196	-	fimbrial chaparone
1142	 28.92	-2	1261147..1261713	-	188	197285057	-	PMI1197	-	fimbrial subunit
1143	 38.28	0	1262202..1263596	-	464	197285058	ydgI	PMI1198	-	arginine/ornithine antiporter
1144	 40.46	0	1263865..1264818	-	317	197285059	-	PMI1199	-	hypothetical protein
1145	 41.63	0	1265206..1266735	+	509	197285060	pntA	PMI1200	-	NAD(P) transhydrogenase subunit alpha (pyridine nucleotide transhydrogenase subunit alpha)
1146	 41.11	0	1266747..1268135	+	462	197285061	pntB	PMI1201	-	NAD(P) transhydrogenase subunit beta (pyridine nucleotide transhydrogenase subunit beta)
1147	 39.96	0	1268218..1269168	-	316	197285062	uspE	PMI1202	-	universal stress protein E
1148	 41.24	0	1269311..1270069	-	252	197285063	fnr	PMI1203	-	fumarate and nitrate reduction regulatory protein
1149	 40.63	0	1270635..1273031	+	798	197285064	-	PMI1204	-	dimethyl sulfoxide reductase chain A precursor
1150	 38.89	0	1273028..1273657	+	209	197285065	-	PMI1205	-	anaerobic dimethyl sulfoxide reductase chain B
1151	 36.66	0	1273654..1274526	+	290	197285066	-	PMI1206	-	anaerobic dimethyl sulfoxide reductase chain C
1152	 38.53	0	1274547..1275431	+	294	197285067	-	PMI1207	-	ferredoxin
1153	 39.28	0	1275562..1276587	+	341	197285068	-	PMI1208	-	probable zinc-binding dehydrogenase
1154	 36.27	0	1277098..1278933	+	611	197285069	disA	PMI1209	-	tyrosine decarboxylase
1155	 40.32	0	1279291..1280106	+	271	197285070	-	PMI1210	-	PadR-family transcriptional regulator
1156	 34.62	-1	1280099..1280254	+	51	197285071	-	PMI1211	-	hypothetical protein
1157	 38.84	0	1280536..1281243	+	235	197285072	-	PMI1212	-	hypothetical protein
1158	 40.60	0	1281536..1282099	+	187	197285073	ahpC	PMI1213	-	alkyl hydroperoxide reductase subunit C
1159	 41.32	0	1282192..1283757	+	521	197285074	ahpF	PMI1214	-	alkyl hydroperoxide reductase subunit F
1160	 34.94	0	1284070..1285062	+	330	197285075	-	PMI1215	-	hypothetical protein
1161	 29.19	-2	1285324..1285806	+	160	197285076	-	PMI1216	-	hypothetical protein
1162	 36.02	0	1285965..1286447	+	160	197285077	-	PMI1217	-	acetyltransferase
1163	 36.19	0	1286640..1287548	+	302	197285078	-	PMI1218	-	efflux protein
1164	 23.61	-2	1287671..1289131	+	486	197285079	-	PMI1219	-	hypothetical protein
1165	 37.53	0	1289203..1290654	+	483	197285080	amn	PMI1220	-	AMP nucleosidase
1166	 41.59	0	1290737..1291729	-	330	197285081	-	PMI1221	-	integrase/recombinase
1167	 40.46	0	1292037..1293074	-	345	197285082	-	PMI1222	-	exported L-asparaginase
1168	 42.92	0	1293788..1294861	+	357	197285083	-	PMI1223	-	HlyD-family secretion protein
1169	 41.17	0	1294858..1297626	+	922	197285084	-	PMI1224	-	ABC-type multidrug transport system
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.