IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
987	 38.34	0	1089417..1090274	-	285	197284902	sitD	PMI1024	-	iron ABC transporter, membrane protein
988	 41.56	0	1090271..1091182	-	303	197284903	sitC	PMI1025	-	iron ABC transporter, membrane protein
989	 40.32	0	1091185..1092072	-	295	197284904	sitB	PMI1026	-	iron ABC transporter, ATP-binding protein
990	 39.49	0	1092069..1092977	-	302	197284905	sitA	PMI1027	-	iron ABC transporter, periplasmic substrate-binding protein
991	 40.74	0	1093368..1094069	+	233	197284906	-	PMI1028	-	membrane-bound lytic murein transglycosylase
992	 42.99	0	1094021..1094755	-	244	197284907	marC	PMI1029	-	multiple antibiotic resistance protein
993	 38.36	0	1094862..1095458	-	198	197284908	-	PMI1030	-	acetyltransferase
994	 44.63	+1	1095725..1096078	+	117	197284909	csaA	PMI1031	-	protein secretion chaperone
995	 39.30	0	1096170..1096856	+	228	197284910	-	PMI1032	-	transcriptional regulator
996	 35.75	0	1097083..1097994	+	303	197284911	-	PMI1033	-	fimbrial subunit
997	 40.80	0	1098276..1100204	+	642	197284912	thrS	PMI1034	-	threonyl-tRNA synthetase
998	 42.59	0	1100208..1100747	+	179	197284913	-	PMI1035	-	translation initiation factor IF-3
999	 42.42	0	1100842..1101039	+	65	197284914	rpmI	PMI1036	-	50S ribosomal subunit protein L35
1000	 46.22	+1	1101083..1101439	+	118	197284915	rplT	PMI1037	-	50S ribosomal protein L20
1001	 42.78	0	1101764..1102747	+	327	197284916	pheS	PMI1038	-	phenylalanyl-tRNA synthetase alpha chain
1002	 41.79	0	1102762..1105149	+	795	197284917	pheT	PMI1039	-	phenylalanyl-tRNA synthetase beta chain
1003	 45.12	+1	1105154..1105450	+	98	197284918	ihfA	PMI1040	-	integration host factor alpha-subunit
1004	 38.95	0	1105755..1106768	+	337	197284919	btuC	PMI1041	-	vitamin B12 import system permease protein
1005	 31.60	-1	1106770..1107519	+	249	197284920	btuD	PMI1042	-	vitamin B12 import ATP-binding protein
1006	 42.41	0	1107654..1108799	+	381	197284921	arnB	PMI1043	-	UDP-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferase
1007	 40.47	0	1108799..1109779	+	326	197284922	arnC	PMI1044	-	undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferase
1008	 39.49	0	1109779..1111761	+	660	197284923	arnA	PMI1045	-	bifunctional polymyxin resistance protein [includes: UDP-glucuronic acid decarboxylase and UDP-4-amino-4-deoxy-l-arabinose formyltransferase
1009	 41.50	0	1111761..1112654	+	297	197284924	-	PMI1046	-	polysaccharide deacetylase
1010	 40.31	0	1112662..1114323	+	553	197284925	arnT	PMI1047	-	undecaprenyl phosphate-alpha-4-amino-4-deoxy-l-arabinose arabinosyl transferase
1011	 37.13	0	1114323..1114664	+	113	197284926	-	PMI1048	-	hypothetical protein
1012	 38.81	0	1114661..1115062	+	133	197284927	-	PMI1049	-	hypothetical protein
1013	 39.43	0	1115210..1115701	+	163	197284928	nlpC	PMI1050	-	lipoprotein
1014	 40.00	0	1115779..1116798	+	339	197284929	lplA	PMI1051	-	lipoate-protein ligase A
1015	 34.42	-1	1116915..1117283	-	122	197284930	pqrA	PMI1052	-	AraC-family transcriptional regulator
1016	 40.81	0	1117864..1119066	-	400	197284931	-	PMI1053	-	FAD dependent oxidoreductase
1017	 40.48	0	1119084..1119797	-	237	197284932	-	PMI1054	-	GntR-family transcriptional regulator
1018	 40.60	0	1119798..1121765	-	655	197284933	-	PMI1055	-	TRAP-type C4-dicarboxylate transport system permease component
1019	 39.42	0	1121778..1122812	-	344	197284934	-	PMI1056	-	TRAP-type transport system substrate-binding protein
1020	 35.87	0	1123218..1123730	-	170	197284935	-	PMI1057	-	hypothetical protein
1021	 39.46	0	1123899..1125578	-	559	197284936	budB	PMI1058	-	acetolactate synthase, catabolic
1022	 36.68	0	1125643..1126479	-	278	197284937	budA	PMI1059	-	alpha-acetolactate decarboxylase
1023	 27.54	-2	1127237..1127512	+	91	197284938	-	PMI1060	-	fimbrial operon regulator
1024	 35.65	0	1127562..1128080	+	172	197284939	-	PMI1061	-	fimbrial protein
1025	 31.57	-1	1128290..1130665	+	791	197284940	-	PMI1062	-	Fimbrial usher protein
1026	 34.23	-1	1130658..1131326	+	222	197284941	-	PMI1063	-	fimbrial chaperone
1027	 36.40	0	1131337..1132347	+	336	197284942	-	PMI1064	-	fimbrial protein
1028	 37.18	0	1132348..1132893	+	181	197284943	-	PMI1065	-	fimbrial subunit
1029	 36.61	0	1132904..1133452	+	182	197284944	-	PMI1066	-	fimbrial protein
1030	 27.87	-2	1133454..1134002	+	182	197284945	-	PMI1067	-	fimbrial protein
1031	 23.88	-2	1134187..1134588	-	133	197284946	-	PMI1068	-	hypothetical protein
1032	 31.84	-1	1136286..1136822	-	178	197284947	-	PMI1070	-	hypothetical protein
1033	 31.91	-1	1136839..1136979	-	46	197284948	-	PMI1071	-	hypothetical protein
1034	 33.54	-1	1137942..1138424	-	160	197284949	hocA	PMI1073	-	phosphotriesterase
1035	 37.96	0	1142794..1143225	-	143	197284950	-	PMI1075	-	hypothetical protein
1036	 41.48	0	1143741..1144832	-	363	197284951	engD	PMI1080	-	GTP-dependent nucleic acid-binding protein
1037	 38.46	0	1145024..1145608	-	194	197284952	pth	PMI1081	-	peptidyl-tRNA hydrolase
1038	 39.78	0	1145953..1146231	+	92	197284953	-	PMI1082	-	hypothetical protein
1039	 44.20	0	1146469..1147416	-	315	197284954	prsA	PMI1083	-	ribose-phosphate pyrophosphokinase
1040	 45.09	+1	1147505..1148380	-	291	197284955	ispE	PMI1084	-	4-diphosphocytidyl-2-c-methyl-d-erythritol kinase
1041	 41.00	0	1148377..1149015	-	212	197284956	lolB	PMI1085	-	outer-membrane lipoprotein
1042	 41.73	0	1149255..1150517	+	420	197284957	hemA	PMI1086	-	glutamyl-tRNA reductase
1043	 44.78	+1	1150546..1151628	+	360	197284958	prfA	PMI1087	-	peptide chain release factor 1
1044	 41.70	0	1151628..1152476	+	282	197284959	hemK	PMI1088	-	protein methyltransferase (protein-glutamine N-methyltransferase)
1045	 37.88	0	1152457..1153269	+	270	197284960	sirB1	PMI1089	-	hypothetical protein
1046	 42.57	0	1153327..1154181	+	284	197284961	kdsA	PMI1090	-	2-dehydro-3-deoxyphosphooctulonate aldolase
1047	 39.89	0	1154189..1155118	+	309	197284962	-	PMI1091	-	hypothetical protein
1048	 37.99	0	1155196..1155474	+	92	197284963	-	PMI1092	-	hypothetical protein
1049	 41.50	0	1155644..1157344	-	566	197284964	-	PMI1093	-	sulfate transporter
1050	 38.96	0	1158306..1159247	+	313	197284965	-	PMI1094	-	2-hydroxyacid dehydrogenase
1051	 27.46	-2	1159439..1162300	+	953	197284966	-	PMI1095	-	hypothetical protein
1052	 38.92	0	1162545..1163153	+	202	197284967	-	PMI1096	-	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein
1053	 40.32	0	1163377..1163934	+	185	197284968	-	PMI1097	-	chaperone
1054	 36.58	0	1164172..1164726	-	184	197284969	-	PMI1098	-	lipoprotein
1055	 41.90	0	1164768..1165970	-	400	197284970	mdtH	PMI1099	-	multidrug resistance protein (MFS-family transporter)
1056	 39.35	0	1166165..1166746	+	193	197284971	rimJ	PMI1100	-	ribosomal-protein-alanine acetyltransferase
1057	 39.58	0	1166917..1168452	+	511	197284972	mviN	PMI1101	-	hypothetical protein
1058	 40.29	0	1169492..1169764	+	90	197284973	-	PMI1102	-	lipoprotein
1059	 41.36	0	1169911..1171641	-	576	197284974	argS	PMI1103	-	arginyl-tRNA synthetase
1060	 36.40	0	1171814..1172368	+	184	197284975	-	PMI1104	-	hypothetical protein
1061	 42.36	0	1172535..1173287	+	250	197284976	cutC	PMI1105	-	copper homeostasis protein
1062	 38.87	0	1173343..1174932	-	529	197284977	-	PMI1106	-	lipoprotein
1063	 36.40	0	1175287..1176849	-	520	197284978	-	PMI1107	-	ABC transporter, ATP-binding protein
1064	 40.72	0	1177186..1178160	-	324	197284979	-	PMI1108	-	hypothetical protein
1065	 38.53	0	1178163..1178912	-	249	197284980	-	PMI1109	-	hypothetical protein
1066	 38.60	0	1179097..1179495	-	132	197284981	-	PMI1110	-	hypothetical protein
1067	 43.19	0	1179763..1181547	+	594	197284982	aspS	PMI1111	-	aspartyl-tRNA synthetase
1068	 42.24	0	1181548..1181985	+	145	197284983	ntpA	PMI1112	-	DATP pyrophosphohydrolase
1069	 44.05	0	1182014..1182769	+	251	197284984	-	PMI1113	-	hypothetical protein
1070	 44.25	0	1182894..1183415	+	173	197284985	ruvC	PMI1114	-	Holliday junction nuclease
1071	 42.15	0	1183518..1184141	+	207	197284986	ruvA	PMI1115	-	Holliday junction ATP-dependent DNA helicase
1072	 43.92	0	1184154..1185164	+	336	197284987	ruvB	PMI1116	-	Holliday junction ATP-dependent DNA helicase
1073	 48.17	+1	1185979..1186497	+	172	197284988	hcp	PMI1117	-	hypothetical protein
1074	 48.07	+1	1186581..1188683	+	700	197284989	-	PMI1118	-	Rhs-family protein
1075	 42.90	0	1188696..1189751	+	351	197284990	-	PMI1119	-	hypothetical protein
1076	 43.08	0	1189744..1194855	+	1703	197284991	-	PMI1120	-	Rhs-family protein
1077	 25.16	-2	1194871..1195482	+	203	197284992	-	PMI1121	-	hypothetical protein
1078	 26.67	-2	1195540..1195719	+	59	197284993	-	PMI1122	-	hypothetical protein
1079	 29.51	-2	1195694..1195876	+	60	197284994	-	PMI1123	-	hypothetical protein
1080	 25.23	-2	1195873..1196193	+	106	197284995	-	PMI1124	-	hypothetical protein
1081	 43.74	0	1196255..1197397	+	380	197284996	-	PMI1125	-	Rhs-family protein
1082	 29.09	-2	1197400..1197729	+	109	197284997	-	PMI1126	-	hypothetical protein
1083	 44.44	0	1197795..1197947	+	50	197284998	-	PMI1127	-	hypothetical protein
1084	 26.04	-2	1199654..1199941	+	95	197284999	-	PMI1129	-	hypothetical protein
1085	 36.43	0	1199975..1200103	+	42	197285000	-	PMI1130	-	hypothetical protein
1086	 29.63	-2	1201193..1201732	+	179	197285001	-	PMI1132	-	hypothetical protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.