IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
786	 28.11	0	684081..685400	-	439	123968322	-	A9601_07871	-	hypothetical protein
787	 30.89	0	685532..685900	-	122	123968323	-	A9601_07881	-	CopG family protein
788	 27.45	0	686131..686334	+	67	123968324	-	A9601_07891	-	hypothetical protein
789	 21.84	-2	686377..686550	-	57	123968325	-	A9601_07901	-	hypothetical protein
790	 33.84	0	686688..686885	+	65	123968326	-	A9601_07911	-	hypothetical protein
791	 29.23	0	686909..687103	-	64	123968327	-	A9601_07921	-	hypothetical protein
792	 27.32	0	687247..687429	+	60	123968328	-	A9601_07931	-	hypothetical protein
793	 20.93	-2	687605..687733	-	42	123968329	-	A9601_07941	-	hypothetical protein
794	 28.49	0	687743..688093	-	116	123968330	-	A9601_07951	-	alpha-2-macroglobulin family protein
795	 25.99	-1	688133..688309	-	58	123968331	-	A9601_07961	-	hypothetical protein
796	 22.60	-2	688391..688828	-	145	123968332	-	A9601_07971	-	hypothetical protein
797	 25.93	-1	688957..689226	+	89	123968333	-	A9601_07981	-	hypothetical protein
798	 28.42	0	689240..689422	-	60	123968334	-	A9601_07991	-	hypothetical protein
799	 28.32	0	689487..689765	-	92	123968335	-	A9601_08001	-	hypothetical protein
800	 39.22	+1	689881..689982	+	33	123968336	petN	A9601_08011	-	cytochrome b6-f complex subunit PetN
801	 28.16	0	690123..690779	-	218	123968337	-	A9601_08021	-	Thf1-like protein
802	 36.39	+1	690815..691402	+	195	123968338	-	A9601_08031	-	ATP-dependent Clp protease proteolytic subunit
803	 37.72	+1	691399..693312	-	637	123968339	-	A9601_08041	-	FtsH ATP-dependent protease-like protein
804	 32.38	0	693420..693629	+	69	123968340	-	A9601_08051	-	hypothetical protein
805	 26.44	-1	693631..694848	-	405	123968341	-	A9601_08061	-	insulinase family protein
806	 29.98	0	694842..696092	-	416	123968342	-	A9601_08071	-	Zn-dependent peptidase
807	 28.37	0	696134..696859	+	241	123968343	pcyA	A9601_08081	-	phycocyanobilin:ferredoxin oxidoreductase
808	 32.57	0	696859..697773	+	304	123968344	-	A9601_08091	-	ABC transporter
809	 34.61	0	697773..698945	+	390	123968345	-	A9601_08101	-	ABC-transporter, membrane spanning component
810	 33.47	0	698959..699687	+	242	123968346	-	A9601_08111	-	ABC transporter, ATP-binding component
811	 38.00	+1	699706..699855	+	49	123968347	-	A9601_08121	-	hypothetical protein
812	 31.14	0	699917..700828	+	303	123968348	-	A9601_08131	-	glycosyl transferase family protein
813	 37.73	+1	700958..701662	+	234	123968349	rpsB	A9601_08141	-	30S ribosomal protein S2
814	 36.23	+1	701707..702363	+	218	123968350	tsf	A9601_08151	-	elongation factor Ts
815	 24.42	-1	702299..703453	+	384	123968351	-	A9601_08161	-	adenylate cyclase
816	 28.19	0	703476..705923	+	815	123968352	recG	A9601_08171	-	ATP-dependent DNA helicase recG
817	 33.22	0	706667..708454	-	595	123968353	sir	A9601_08201	-	sulfite reductase subunit beta
818	 29.50	0	708542..710704	+	720	123968354	glyS	A9601_08211	-	glycyl-tRNA synthetase beta subunit
819	 36.61	+1	710685..712025	-	446	123968355	chlP	A9601_08221	-	aromatic-ring hydroxylase (flavoprotein monooxygenase)
820	 32.35	0	712139..712852	+	237	123968356	vanY	A9601_08231	-	putative carboxypeptidase
821	 36.00	+1	712982..714778	+	598	123968357	typA	A9601_08241	-	tyrosine binding protein
822	 31.71	0	714790..715158	+	122	123968358	-	A9601_08251	-	hypothetical protein
823	 34.02	0	715259..715987	+	242	123968359	-	A9601_08261	-	ABC transporter ATP-binding protein
824	 32.80	0	716102..717031	+	309	123968360	ccmC	A9601_08271	-	putative heme transporter
825	 37.57	+1	717057..717812	-	251	123968361	rpe	A9601_08281	-	ribulose-phosphate 3-epimerase
826	 39.32	+1	718000..719001	+	333	123968362	glpX	A9601_08291	-	fructose 1,6-bisphosphatase II
827	 33.49	0	719020..720330	+	436	123968363	hemA	A9601_08301	-	glutamyl-tRNA reductase
828	 37.50	+1	720461..721756	+	431	123968364	glgC	A9601_08311	-	glucose-1-phosphate adenylyltransferase
829	 36.43	+1	721853..723271	+	472	123968365	gnd	A9601_08321	-	6-phosphogluconate dehydrogenase
830	 28.59	0	723259..723996	+	245	123968366	-	A9601_08331	-	putative 6-phosphogluconolactonase (DevB, Pgl)
831	 30.78	0	724027..724575	+	182	123968367	-	A9601_08341	-	hypothetical protein
832	 28.42	0	724565..724951	+	128	123968368	-	A9601_08351	-	coat protein-like protein
833	 36.74	+1	724972..726645	-	557	123968369	ilvD	A9601_08361	-	dihydroxy-acid dehydratase
834	 36.08	+1	726669..726959	-	96	123968370	-	A9601_08371	-	hypothetical protein
835	 31.88	0	726989..727606	-	205	123968371	upp	A9601_08381	-	putative uracil phosphoribosyltransferase
836	 32.75	0	727670..728182	+	170	123968372	-	A9601_08391	-	hypothetical protein
837	 28.26	0	728192..729256	+	354	123968373	cobW	A9601_08401	-	putative cobalamin synthesis protein
838	 28.48	0	729303..729467	+	54	123968374	-	A9601_08411	-	hypothetical protein
839	 31.76	0	729567..729821	+	84	123968375	purS	A9601_08421	-	phosphoribosylformylglycinamidine synthetase PurS
840	 36.19	+1	729823..730488	+	221	123968376	-	A9601_08431	-	phosphoribosylformylglycinamidine synthase
841	 38.73	+1	730539..731612	-	357	123968377	cbbA	A9601_08441	-	fructose-1,6-bisphosphate aldolase
842	 38.01	+1	731760..732827	-	355	123968378	-	A9601_08451	-	fructose-1,6-bisphosphate aldolase class I
843	 31.69	0	732931..734028	-	365	123968379	-	A9601_08461	-	putative oxidoreductase
844	 27.99	0	734031..734423	-	130	123968380	-	A9601_08471	-	hypothetical protein
845	 35.60	0	734425..735306	-	293	123968381	accD	A9601_08481	-	acetyl-CoA carboxylase subunit beta
846	 36.79	+1	735446..736342	-	298	123968382	prkB	A9601_08491	-	phosphoribulokinase
847	 31.01	0	736432..737505	-	357	123968383	leuB	A9601_08501	-	3-isopropylmalate dehydrogenase
848	 30.72	0	737534..738568	-	344	123968384	lpxD	A9601_08511	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
849	 29.73	0	738588..739670	-	360	123968385	proB	A9601_08521	-	gamma-glutamyl kinase
850	 25.86	-1	739667..740161	-	164	123968386	-	A9601_08531	-	HAD superfamily hydrolase
851	 30.54	0	740167..740703	-	178	123968387	-	A9601_08541	-	hypothetical protein
852	 30.74	0	740730..741191	-	153	123968388	-	A9601_08551	-	endonuclease
853	 23.48	-1	741188..742243	-	351	123968389	-	A9601_08561	-	hypothetical protein
854	 26.74	-1	742244..743410	-	388	123968390	-	A9601_08571	-	hypothetical protein
855	 29.51	0	743421..743969	-	182	123968391	-	A9601_08581	-	hypothetical protein
856	 27.89	0	743984..745600	-	538	123968392	-	A9601_08591	-	hypothetical protein
857	 32.81	0	745680..746447	-	255	123968393	hisA	A9601_08601	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
858	 28.66	0	746540..747460	+	306	123968394	-	A9601_08611	-	putative mRNA binding protein
859	 26.30	-1	747434..747973	-	179	123968395	pgsA	A9601_08621	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
860	 29.41	0	748157..748768	+	203	123968396	-	A9601_08631	-	glutaredoxin
861	 30.69	0	748779..748967	-	62	123968397	-	A9601_08641	-	hypothetical protein
862	 30.61	0	748994..749653	-	219	123968398	-	A9601_08651	-	putative NADH-flavin reductase
863	 32.72	0	749689..750342	-	217	123968399	nth	A9601_08661	-	putative endonuclease
864	 30.12	0	750438..751496	+	352	123968400	potA	A9601_08671	-	ABC transporter ATP-binding protein
865	 32.25	0	751741..752295	+	184	123968401	-	A9601_08681	-	ferritin
866	 21.67	-2	752281..752460	-	59	123968402	-	A9601_08691	-	hypothetical protein
867	 36.73	+1	752573..753160	-	195	123968403	-	A9601_08701	-	Crp family regulatory proteins
868	 23.83	-1	753496..754284	-	262	123968404	-	A9601_08711	-	ABC transporter ATPase
869	 27.74	0	754389..755711	-	440	123968405	-	A9601_08721	-	Rieske iron-sulfur protein 2Fe-2S subunit
870	 21.53	-2	755697..755840	+	47	123968406	-	A9601_08731	-	hypothetical protein
871	 31.79	0	755869..756063	-	64	123968407	-	A9601_08741	-	hypothetical protein
872	 27.19	0	756430..756771	+	113	123968408	-	A9601_08751	-	S1 RNA-binding domain-containing protein
873	 25.42	-1	756793..757032	-	79	123968409	-	A9601_08761	-	hypothetical protein
874	 18.95	-2	757139..757291	+	50	123968410	-	A9601_08771	-	hypothetical protein
875	 30.30	0	757313..757609	-	98	123968411	-	A9601_08781	-	hypothetical protein
876	 28.85	0	757707..757862	-	51	123968412	-	A9601_08791	-	hypothetical protein
877	 26.32	-1	757933..758331	+	132	123968413	-	A9601_08801	-	hypothetical protein
878	 32.06	0	758459..758773	+	104	123968414	-	A9601_08811	-	hypothetical protein
879	 27.01	-1	759174..759347	+	57	123968415	-	A9601_08821	-	hypothetical protein
880	 20.37	-2	759354..759461	+	35	123968416	-	A9601_08831	-	hypothetical protein
881	 34.04	0	759811..760521	-	236	123968417	livF	A9601_08841	-	putative ATP-binding subunit of urea ABC transport system
882	 32.27	0	760524..761273	-	249	123968418	urtD	A9601_08851	-	putative ATP binding subunit of urea ABC transport system
883	 34.31	0	761266..762396	-	376	123968419	urtC	A9601_08861	-	putative membrane protein of urea ABC transport system
884	 35.84	0	762396..763550	-	384	123968420	livH	A9601_08871	-	putative urea ABC transporter
885	 41.24	+2	763633..764910	-	425	123968421	-	A9601_08881	-	putative urea ABC transporter, substrate binding protein
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.