IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
721	 29.95	0	642039..642482	+	147	123968257	-	A9601_07221	-	hypothetical protein
722	 26.36	-1	642492..643265	+	257	123968258	-	A9601_07231	-	hypothetical protein
723	 33.18	0	643353..644015	+	220	123968259	-	A9601_07241	-	hypothetical protein
724	 37.05	+1	644032..644676	-	214	123968260	tesA	A9601_07251	-	lysophospholipase L1
725	 25.91	-1	644726..645856	-	376	123968261	-	A9601_07261	-	putative phosphonate ABC transporter
726	 26.99	-1	646233..646973	-	246	123968262	-	A9601_07271	-	putative phosphonate ABC transporter
727	 28.08	0	646970..647863	-	297	123968263	phnD	A9601_07281	-	phosphonate ABC transporter phosphonate-binding protein
728	 32.32	0	647876..649054	-	392	123968264	aspC	A9601_07291	-	aminotransferases class-I
729	 31.15	0	649216..649719	+	167	123968265	-	A9601_07301	-	Uracil-DNA glycosylase
730	 36.29	+1	649755..650972	+	405	123968266	ispG	A9601_07311	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
731	 30.34	0	651033..652367	+	444	123968267	-	A9601_07321	-	carboxyl-terminal processing protease
732	 33.33	0	652364..653278	-	304	123968268	nadA	A9601_07331	-	quinolinate synthetase
733	 32.04	0	653442..654215	+	257	123968269	-	A9601_07341	-	putative transcripton factor
734	 34.21	0	654239..655036	-	265	123968270	-	A9601_07351	-	hypothetical protein
735	 30.98	0	655068..656258	+	396	123968271	-	A9601_07361	-	hypothetical protein
736	 30.22	0	656255..657346	-	363	123968272	aroB	A9601_07371	-	3-dehydroquinate synthase
737	 31.23	0	657471..658661	+	396	123968273	purK	A9601_07381	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
738	 35.33	0	659025..659324	+	99	123968274	-	A9601_07391	-	hypothetical protein
739	 26.24	-1	659321..659461	+	46	123968275	-	A9601_07401	-	hypothetical protein
740	 34.64	0	659451..659603	+	50	123968276	-	A9601_07411	-	hypothetical protein
741	 28.95	0	659615..659728	-	37	123968277	-	A9601_07421	-	hypothetical protein
742	 32.00	0	659728..660477	-	249	123968278	-	A9601_07431	-	NAD-dependent DNA ligase N-terminus
743	 27.05	-1	660478..660684	-	68	123968279	-	A9601_07441	-	hypothetical protein
744	 29.07	0	660716..660973	-	85	123968280	-	A9601_07451	-	hypothetical protein
745	 30.38	0	661043..661279	-	78	123968281	-	A9601_07461	-	hypothetical protein
746	 32.99	0	661471..661761	+	96	123968282	-	A9601_07471	-	hypothetical protein
747	 25.14	-1	662493..662675	-	60	123968283	-	A9601_07481	-	hypothetical protein
748	 32.32	0	662682..662879	-	65	123968284	-	A9601_07491	-	hypothetical protein
749	 29.41	0	662971..663225	-	84	123968285	-	A9601_07501	-	high light inducible protein
750	 29.17	0	663575..663694	-	39	123968286	-	A9601_07511	-	hypothetical protein
751	 25.86	-1	663746..663919	-	57	123968287	-	A9601_07521	-	hypothetical protein
752	 33.80	0	664019..664231	-	70	123968288	-	A9601_07531	-	hypothetical protein
753	 28.27	0	664413..664649	-	78	123968289	-	A9601_07541	-	DDT domain-containing protein
754	 30.99	0	664633..664803	-	56	123968290	-	A9601_07551	-	hypothetical protein
755	 28.99	0	664865..665071	-	68	123968291	-	A9601_07561	-	hypothetical protein
756	 32.58	0	665247..665912	+	221	123968292	-	A9601_07571	-	short-chain dehydrogenase/reductase
757	 32.62	0	666014..666154	-	46	123968293	-	A9601_07581	-	hypothetical protein
758	 29.41	0	666445..666699	-	84	123968294	-	A9601_07591	-	hypothetical protein
759	 29.82	0	666699..666926	-	75	123968295	-	A9601_07601	-	D12 class N6 adenine-specific DNA methyltransferase
760	 32.73	0	667019..667183	-	54	123968296	-	A9601_07611	-	hypothetical protein
761	 30.56	0	667189..667440	-	83	123968297	-	A9601_07621	-	DnaJ domain-containing protein
762	 28.57	0	667734..667859	-	41	123968298	-	A9601_07631	-	hypothetical protein
763	 34.60	0	668393..668629	+	78	123968299	-	A9601_07641	-	hypothetical protein
764	 29.22	0	668651..668893	+	80	123968300	-	A9601_07651	-	hypothetical protein
765	 28.72	0	668914..669108	-	64	123968301	-	A9601_07661	-	hypothetical protein
766	 37.82	+1	669202..669513	-	103	123968302	-	A9601_07671	-	LysM domain-containing protein
767	 29.17	0	669796..670179	+	127	123968303	-	A9601_07681	-	hypothetical protein
768	 27.96	0	670187..670279	+	30	123968304	-	A9601_07691	-	hypothetical protein
769	 25.36	-1	670276..670413	+	45	123968305	-	A9601_07701	-	hypothetical protein
770	 32.82	0	670497..670889	+	130	123968306	-	A9601_07711	-	hypothetical protein
771	 37.12	+1	670967..671098	+	43	123968307	-	A9601_07721	-	hypothetical protein
772	 34.75	0	671282..672337	+	351	123968308	-	A9601_07731	-	VIC family potassium channel protein
773	 37.96	+1	672438..673409	+	323	123968309	-	A9601_07741	-	ABC transporter, substrate binding protein, phosphate
774	 34.81	0	673515..674462	+	315	123968310	pstC	A9601_07751	-	putative phosphate ABC transporter
775	 36.35	+1	674469..675362	+	297	123968311	pstA	A9601_07761	-	putative phosphate ABC transporter
776	 32.96	0	675363..676172	+	269	123968312	pstB	A9601_07771	-	putative phosphate ABC transporter, ATP binding subunit
777	 25.64	-1	676400..676555	+	51	123968313	-	A9601_07781	-	hypothetical protein
778	 29.25	0	676566..676712	+	48	123968314	-	A9601_07791	-	hypothetical protein
779	 31.02	0	676895..677197	-	100	123968315	-	A9601_07801	-	hypothetical protein
780	 27.19	0	677404..678054	-	216	123968316	-	A9601_07811	-	Serine/threonine specific protein phosphatase
781	 29.96	0	678055..680541	-	828	123968317	-	A9601_07821	-	DEAD/DEAH box helicase domain-containing protein
782	 26.81	-1	680538..682178	-	546	123968318	-	A9601_07831	-	ATP-dependent DNA ligase
783	 29.08	0	682181..683167	-	328	123968319	-	A9601_07841	-	RNA processing exonuclease
784	 25.36	-1	683203..683616	-	137	123968320	-	A9601_07851	-	COMC family protein
785	 27.30	0	683701..683982	-	93	123968321	-	A9601_07861	-	major surface glycoprotein
786	 28.11	0	684081..685400	-	439	123968322	-	A9601_07871	-	hypothetical protein
787	 30.89	0	685532..685900	-	122	123968323	-	A9601_07881	-	CopG family protein
788	 27.45	0	686131..686334	+	67	123968324	-	A9601_07891	-	hypothetical protein
789	 21.84	-2	686377..686550	-	57	123968325	-	A9601_07901	-	hypothetical protein
790	 33.84	0	686688..686885	+	65	123968326	-	A9601_07911	-	hypothetical protein
791	 29.23	0	686909..687103	-	64	123968327	-	A9601_07921	-	hypothetical protein
792	 27.32	0	687247..687429	+	60	123968328	-	A9601_07931	-	hypothetical protein
793	 20.93	-2	687605..687733	-	42	123968329	-	A9601_07941	-	hypothetical protein
794	 28.49	0	687743..688093	-	116	123968330	-	A9601_07951	-	alpha-2-macroglobulin family protein
795	 25.99	-1	688133..688309	-	58	123968331	-	A9601_07961	-	hypothetical protein
796	 22.60	-2	688391..688828	-	145	123968332	-	A9601_07971	-	hypothetical protein
797	 25.93	-1	688957..689226	+	89	123968333	-	A9601_07981	-	hypothetical protein
798	 28.42	0	689240..689422	-	60	123968334	-	A9601_07991	-	hypothetical protein
799	 28.32	0	689487..689765	-	92	123968335	-	A9601_08001	-	hypothetical protein
800	 39.22	+1	689881..689982	+	33	123968336	petN	A9601_08011	-	cytochrome b6-f complex subunit PetN
801	 28.16	0	690123..690779	-	218	123968337	-	A9601_08021	-	Thf1-like protein
802	 36.39	+1	690815..691402	+	195	123968338	-	A9601_08031	-	ATP-dependent Clp protease proteolytic subunit
803	 37.72	+1	691399..693312	-	637	123968339	-	A9601_08041	-	FtsH ATP-dependent protease-like protein
804	 32.38	0	693420..693629	+	69	123968340	-	A9601_08051	-	hypothetical protein
805	 26.44	-1	693631..694848	-	405	123968341	-	A9601_08061	-	insulinase family protein
806	 29.98	0	694842..696092	-	416	123968342	-	A9601_08071	-	Zn-dependent peptidase
807	 28.37	0	696134..696859	+	241	123968343	pcyA	A9601_08081	-	phycocyanobilin:ferredoxin oxidoreductase
808	 32.57	0	696859..697773	+	304	123968344	-	A9601_08091	-	ABC transporter
809	 34.61	0	697773..698945	+	390	123968345	-	A9601_08101	-	ABC-transporter, membrane spanning component
810	 33.47	0	698959..699687	+	242	123968346	-	A9601_08111	-	ABC transporter, ATP-binding component
811	 38.00	+1	699706..699855	+	49	123968347	-	A9601_08121	-	hypothetical protein
812	 31.14	0	699917..700828	+	303	123968348	-	A9601_08131	-	glycosyl transferase family protein
813	 37.73	+1	700958..701662	+	234	123968349	rpsB	A9601_08141	-	30S ribosomal protein S2
814	 36.23	+1	701707..702363	+	218	123968350	tsf	A9601_08151	-	elongation factor Ts
815	 24.42	-1	702299..703453	+	384	123968351	-	A9601_08161	-	adenylate cyclase
816	 28.19	0	703476..705923	+	815	123968352	recG	A9601_08171	-	ATP-dependent DNA helicase recG
817	 33.22	0	706667..708454	-	595	123968353	sir	A9601_08201	-	sulfite reductase subunit beta
818	 29.50	0	708542..710704	+	720	123968354	glyS	A9601_08211	-	glycyl-tRNA synthetase beta subunit
819	 36.61	+1	710685..712025	-	446	123968355	chlP	A9601_08221	-	aromatic-ring hydroxylase (flavoprotein monooxygenase)
820	 32.35	0	712139..712852	+	237	123968356	vanY	A9601_08231	-	putative carboxypeptidase
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.