IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
438	 43.27	+2	379721..380686	-	321	123967974	-	A9601_04371	-	hypothetical protein
439	 27.48	0	381090..381533	+	147	123967975	aroQ	A9601_04381	-	3-dehydroquinate dehydratase
440	 34.65	0	381534..382142	+	202	123967976	miaE	A9601_04391	-	putative tRNA-(MS[2]IO[6]A)-hydroxylase-like protein
441	 31.35	0	382159..382914	+	251	123967977	cobI	A9601_04401	-	precorrin-2-C20-methyltransferase
442	 32.51	0	382914..383399	+	161	123967978	-	A9601_04411	-	hypothetical protein
443	 33.99	0	383474..384847	+	457	123967979	engA	A9601_04421	-	GTP-binding protein EngA
444	 30.05	0	384847..385761	+	304	123967980	cbiQ	A9601_04431	-	cobalt ABC transporter permease
445	 35.15	0	385781..385945	+	54	123967981	-	A9601_04441	-	hypothetical protein
446	 32.64	0	386113..386685	+	190	123967982	-	A9601_04451	-	TIM-barrel fold family protein
447	 35.59	0	386836..387411	+	191	123967983	-	A9601_04461	-	hypothetical protein
448	 29.27	0	387419..388231	+	270	123967984	proC	A9601_04471	-	Delta 1-pyrroline-5-carboxylate reductase
449	 34.02	0	388237..389394	-	385	123967985	-	A9601_04481	-	putative glycosyl transferase, group 1
450	 34.22	0	389480..390265	-	261	123967986	recO	A9601_04491	-	putative recombination protein O
451	 28.94	0	390266..390925	-	219	123967987	deoC	A9601_04501	-	putative deoxyribose-phosphate aldolase
452	 28.72	0	390933..391517	-	194	123967988	lrtA	A9601_04511	-	light repressed protein A
453	 26.42	-1	391562..392212	+	216	123967989	lipB	A9601_04521	-	putative lipoate-protein ligase B
454	 30.92	0	392240..394183	+	647	123967990	fadD	A9601_04531	-	putative long-chain-fatty-acid--CoA ligase
455	 35.36	0	394222..394665	+	147	123967991	-	A9601_04541	-	hypothetical protein
456	 37.57	+1	394884..396251	+	455	123967992	pdhC	A9601_04551	-	branched-chain alpha-keto acid dehydrogenase subunit E2
457	 29.24	0	396258..397382	+	374	123967993	queA	A9601_04561	-	queuosine biosynthesis protein
458	 38.60	+1	397385..398371	-	328	123967994	-	A9601_04571	-	O-acetylserine (thiol)-lyase A
459	 29.66	0	398456..399925	-	489	123967995	-	A9601_04581	-	putative cystathionine gamma-synthase
460	 33.33	0	399929..401092	-	387	123967996	metB	A9601_04591	-	putative cystathionine gamma-synthase
461	 39.08	+1	401169..401777	-	202	123967997	rpsD	A9601_04601	-	30S ribosomal protein S4
462	 39.06	+1	401918..402109	+	63	123967998	-	A9601_04611	-	hypothetical protein
463	 28.05	0	402114..402416	+	100	123967999	-	A9601_04621	-	thioredoxin family protein
464	 29.69	0	402426..403961	+	511	123968000	murE	A9601_04631	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
465	 32.06	0	404043..404747	+	234	123968001	-	A9601_04641	-	putative short chain dehydrogenase
466	 29.42	0	404775..405950	-	391	123968002	-	A9601_04651	-	putative L-cysteine/cystine lyase
467	 32.20	0	405987..406781	-	264	123968003	-	A9601_04661	-	putative methyltransferase
468	 33.33	0	406859..407050	-	63	123968004	-	A9601_04671	-	hypothetical protein
469	 28.29	0	407289..407546	+	85	123968005	-	A9601_04681	-	hypothetical protein
470	 36.59	+1	407569..407814	-	81	123968006	-	A9601_04691	-	NifU-like protein
471	 30.79	0	407885..409381	+	498	123968007	mqo	A9601_04701	-	malate:quinone oxidoreductase
472	 34.38	0	409437..411245	+	602	123968008	lepA	A9601_04711	-	GTP-binding protein LepA
473	 34.52	0	411415..412170	+	251	123968009	dppC	A9601_04721	-	putative ABC transporter, oligopeptides
474	 31.40	0	412173..412844	-	223	123968010	-	A9601_04731	-	tRNA/rRNA methyltransferase (SpoU)
475	 34.31	0	412941..413144	+	67	123968011	-	A9601_04741	-	hypothetical protein
476	 28.75	0	413320..413712	+	130	123968012	-	A9601_04751	-	hypothetical protein
477	 32.49	0	413715..413951	+	78	123968013	-	A9601_04761	-	hypothetical protein
478	 34.15	0	414001..414123	+	40	123968014	-	A9601_04771	-	hypothetical protein
479	 27.10	0	414083..415573	+	496	123968015	-	A9601_04781	-	hypothetical protein
480	 33.33	0	415679..415858	+	59	123968016	-	A9601_04791	-	hypothetical protein
481	 22.92	-1	415878..416021	+	47	123968017	-	A9601_04801	-	hypothetical protein
482	 29.46	0	416073..417389	+	438	123968018	sun	A9601_04811	-	Sun protein (Fmu protein)
483	 26.84	-1	417399..419168	-	589	123968019	mrcB	A9601_04821	-	putative penicillin binding protein
484	 35.23	0	419170..420117	-	315	123968020	chlG	A9601_04831	-	bacteriochlorophyll/chlorophyll a synthase
485	 33.33	0	420126..420350	-	74	123968021	-	A9601_04841	-	hypothetical protein
486	 36.19	+1	420410..421180	+	256	123968022	hisF	A9601_04851	-	imidazole glycerol phosphate synthase subunit HisF (cyclase)
487	 27.07	0	421224..421925	+	233	123968023	ubiE	A9601_04861	-	ubiquinone/menaquinone biosynthesis methyltransferases
488	 29.84	0	421931..422416	-	161	123968024	-	A9601_04871	-	hypothetical protein
489	 29.60	0	422492..423241	+	249	123968025	birA	A9601_04881	-	putative biotin--acetyl-CoA-carboxylase ligase
490	 35.95	+1	423244..423930	-	228	123968026	salX	A9601_04891	-	ABC transporter ATP-binding protein
491	 36.42	+1	423947..425467	-	506	123968027	ndhB	A9601_04901	-	NAD(P)H-quinone oxidoreductase subunit 2
492	 35.56	0	425643..428249	+	868	123968028	topA	A9601_04911	-	DNA topoisomerase I
493	 18.41	-2	428257..428859	+	200	123968029	-	A9601_04921	-	hypothetical protein
494	 31.46	0	428880..429518	+	212	123968030	-	A9601_04931	-	hypothetical protein
495	 33.33	0	429531..430688	+	385	123968031	cobT	A9601_04941	-	hypothetical protein
496	 27.93	0	430689..431687	+	332	123968032	-	A9601_04951	-	hypothetical protein
497	 31.24	0	431676..432773	-	365	123968033	-	A9601_04961	-	aldo/keto reductase
498	 30.12	0	432932..433585	+	217	123968034	ribE	A9601_04971	-	riboflavin synthase subunit alpha
499	 33.62	0	433596..433949	-	117	123968035	-	A9601_04981	-	hypothetical protein
500	 30.18	0	434046..434648	-	200	123968036	ctaE	A9601_04991	-	cytochrome c oxidase, subunit III
501	 36.22	+1	434649..436274	-	541	123968037	cyoB	A9601_05001	-	cytochrome c oxidase, subunit I
502	 30.22	0	436271..437074	-	267	123968038	ctaC	A9601_05011	-	putative cytochrome c oxidase, subunit 2
503	 29.99	0	437338..438264	+	308	123968039	ctaA	A9601_05021	-	hypothetical protein
504	 38.82	+1	438261..439262	+	333	123968040	cyoE	A9601_05031	-	putative protoheme IX farnesyltransferase
505	 31.37	0	439302..440318	+	338	123968041	ccmA	A9601_05041	-	putative multidrug efflux ABC transporter
506	 31.76	0	440366..441190	+	274	123968042	-	A9601_05051	-	putative multidrug efflux ABC transporter
507	 27.71	0	441198..441713	+	171	123968043	-	A9601_05061	-	glycoprotein
508	 37.63	+1	441717..443462	-	581	123968044	groEL	A9601_05071	-	chaperonin GroEL
509	 30.56	0	443594..443773	+	59	123968045	-	A9601_05081	-	hypothetical protein
510	 32.27	0	443774..444523	-	249	123968046	-	A9601_05091	-	3-oxoacyl-[acyl-carrier protein] reductase
511	 33.04	0	444615..445286	+	223	123968047	ispD	A9601_05101	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
512	 33.10	0	445287..446156	-	289	123968048	-	A9601_05111	-	putative carboxypeptidase
513	 31.57	0	446166..447074	-	302	123968049	ubiA	A9601_05121	-	prenyltransferase
514	 32.21	0	447179..448774	+	531	123968050	ppx	A9601_05131	-	putative exopolyphosphatase
515	 29.67	0	448771..449262	-	163	123968051	-	A9601_05141	-	hypothetical protein
516	 33.07	0	449318..450073	-	251	123968052	cobM	A9601_05151	-	putative precorrin-4 C11-methyltransferase
517	 30.31	0	450066..450959	-	297	123968053	lgt	A9601_05161	-	prolipoprotein diacylglyceryl transferase
518	 37.95	+1	450970..451923	-	317	123968054	petA	A9601_05171	-	apocytochrome f
519	 41.53	+2	451929..452465	-	178	123968055	petC	A9601_05181	-	cytochrome b6-f complex iron-sulfur subunit
520	 33.33	0	452589..452906	+	105	123968056	-	A9601_05191	-	hypothetical protein
521	 30.83	0	452875..453633	-	252	123968057	tatC	A9601_05201	-	Tat family protein secretion protein
522	 32.57	0	453714..453974	-	86	123968058	-	A9601_05211	-	hypothetical protein
523	 28.57	0	454004..455704	-	566	123968059	-	A9601_05221	-	secreted protein MPB70 precursor
524	 31.35	0	455778..456332	+	184	123968060	gmk	A9601_05231	-	guanylate kinase
525	 38.56	+1	456510..457064	-	184	123968061	psaF	A9601_05241	-	photosystem I PsaF protein (subunit III)
526	 35.76	0	457139..458209	+	356	123968062	qri7	A9601_05251	-	o-sialoglycoprotein endopeptidase
527	 30.51	0	458215..458391	+	58	123968063	-	A9601_05261	-	high light inducible protein
528	 38.23	+1	458552..459757	+	401	123968064	nhaP	A9601_05271	-	CPA1 family Na+/H+ antiporter
529	 32.56	0	459758..461188	-	476	123968065	gltX	A9601_05281	-	glutamyl-tRNA synthetase
530	 43.08	+2	461429..461623	-	64	123968066	-	A9601_05291	-	hypothetical protein
531	 35.83	0	461785..462264	-	159	123968067	rplS	A9601_05301	-	50S ribosomal protein L19
532	 33.66	0	462288..462596	-	102	123968068	-	A9601_05311	-	hypothetical protein
533	 35.60	0	462692..463531	+	279	123968069	map	A9601_05321	-	methionine aminopeptidase
534	 27.22	0	463535..464254	-	239	123968070	-	A9601_05331	-	short chain dehydrogenase
535	 35.05	0	464410..465519	+	369	123968071	pta	A9601_05341	-	phosphotransacetylase domain-containing protein
536	 36.45	+1	465545..466057	+	170	123968072	-	A9601_05351	-	hypothetical protein
537	 28.92	0	466124..466621	+	165	123968073	-	A9601_05361	-	nucleotide-binding protein
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.