IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
375	 33.33	0	339228..339443	-	71	123967911	-	A9601_03741	-	hypothetical protein
376	 29.87	0	339535..339852	+	105	123967912	-	A9601_03751	-	helper component proteinase
377	 32.82	0	339854..340246	-	130	123967913	-	A9601_03761	-	hypothetical protein
378	 29.59	0	340251..340517	-	88	123967914	-	A9601_03771	-	mttA/Hcf106 family protein
379	 18.12	-2	340608..340745	-	45	123967915	-	A9601_03781	-	hypothetical protein
380	 27.92	0	340926..341165	+	79	123967916	-	A9601_03791	-	hypothetical protein
381	 15.91	-2	341184..341315	-	43	123967917	-	A9601_03801	-	hypothetical protein
382	 32.89	0	341466..341915	+	149	123967918	-	A9601_03811	-	putative bacterioferritin comigratory protein
383	 31.87	0	341982..342254	+	90	123967919	-	A9601_03821	-	hypothetical protein
384	 31.01	0	342351..342695	-	114	123967920	-	A9601_03831	-	hypothetical protein
385	 30.13	0	342923..343297	-	124	123967921	-	A9601_03841	-	hypothetical protein
386	 26.48	-1	343362..343799	+	145	123967922	-	A9601_03851	-	hypothetical protein
387	 29.32	0	343854..344102	+	82	123967923	-	A9601_03861	-	TIR domain-containing protein
388	 24.81	-1	344208..344336	-	42	123967924	-	A9601_03871	-	hypothetical protein
389	 26.64	-1	344383..345249	-	288	123967925	-	A9601_03881	-	abortive infection protein
390	 24.58	-1	345345..346178	-	277	123967926	-	A9601_03891	-	glycosyl transferase family protein
391	 27.73	0	346275..347042	+	255	123967927	-	A9601_03901	-	glycosyl transferase
392	 30.49	0	348325..349275	+	316	123967928	-	A9601_03911	-	proline iminopeptidase
393	 35.06	0	349299..349472	-	57	123967929	-	A9601_03921	-	hypothetical protein
394	 28.32	0	349600..351096	-	498	123967930	-	A9601_03931	-	putative deoxyribodipyrimidine photolyase
395	 28.53	0	351184..351807	+	207	123967931	-	A9601_03941	-	TENA/THI-4 protein
396	 33.33	0	351857..352636	+	259	123967932	thiD	A9601_03951	-	phosphomethylpyrimidine kinase
397	 37.74	+1	352655..352813	-	52	123967933	-	A9601_03961	-	hypothetical protein
398	 26.39	-1	353023..353166	+	47	123967934	-	A9601_03971	-	hypothetical protein
399	 32.69	0	353246..353713	+	155	123967935	-	A9601_03981	-	hypothetical protein
400	 30.16	0	353784..354161	+	125	123967936	-	A9601_03991	-	phosphoenolpyruvate carboxykinase
401	 35.52	0	354198..354380	-	60	123967937	-	A9601_04001	-	hypothetical protein
402	 32.98	0	354616..354900	+	94	123967938	-	A9601_04011	-	hypothetical protein
403	 28.67	0	355379..355678	+	99	123967939	-	A9601_04021	-	hypothetical protein
404	 33.33	0	355675..355860	-	61	123967940	-	A9601_04031	-	hypothetical protein
405	 34.81	0	355889..356023	-	44	123967941	-	A9601_04041	-	hypothetical protein
406	 36.46	+1	356249..356440	-	63	123967942	-	A9601_04051	-	hypothetical protein
407	 40.87	+2	356786..357037	+	83	123967943	-	A9601_04061	-	hypothetical protein
408	 23.78	-1	357102..357530	+	142	123967944	-	A9601_04071	-	hypothetical protein
409	 31.85	0	357437..357571	-	44	123967945	-	A9601_04081	-	hypothetical protein
410	 28.85	0	357578..357733	-	51	123967946	-	A9601_04091	-	hypothetical protein
411	 30.95	0	357864..358115	+	83	123967947	-	A9601_04101	-	hypothetical protein
412	 31.43	0	358105..358314	+	69	123967948	-	A9601_04111	-	hypothetical protein
413	 33.06	0	358557..358919	+	120	123967949	-	A9601_04121	-	hypothetical protein
414	 26.67	-1	359042..359296	-	84	123967950	-	A9601_04131	-	hypothetical protein
415	 25.32	-1	359367..359603	+	78	123967951	-	A9601_04141	-	hypothetical protein
416	 26.67	-1	359740..359934	+	64	123967952	-	A9601_04151	-	hypothetical protein
417	 33.86	0	360061..360825	-	254	123967953	-	A9601_04161	-	putative dehydrogenase
418	 33.22	0	361007..361858	+	283	123967954	-	A9601_04171	-	hypothetical protein
419	 30.20	0	361948..362202	+	84	123967955	-	A9601_04181	-	hypothetical protein
420	 30.70	0	362468..362695	-	75	123967956	-	A9601_04191	-	hypothetical protein
421	 34.48	0	362696..362956	-	86	123967957	-	A9601_04201	-	high light inducible protein
422	 37.62	+1	362956..363165	-	69	123967958	-	A9601_04211	-	high light inducible protein
423	 40.14	+1	363383..363529	+	48	123967959	-	A9601_04221	-	hypothetical protein
424	 35.73	0	363566..364066	-	166	123967960	-	A9601_04231	-	hypothetical protein
425	 31.28	0	364066..364260	-	64	123967961	-	A9601_04241	-	hypothetical protein
426	 42.66	+2	364502..365284	+	260	123967962	-	A9601_04251	-	periplasmic protein
427	 37.57	+1	365384..365572	-	62	123967963	-	A9601_04261	-	hypothetical protein
428	 29.71	0	365886..366299	+	137	123967964	vsr	A9601_04271	-	hypothetical protein
429	 28.60	0	366365..369070	+	901	123967965	-	A9601_04281	-	hypothetical protein
430	 25.44	-1	369074..370048	+	324	123967966	-	A9601_04291	-	hypothetical protein
431	 32.07	0	370048..372033	+	661	123967967	-	A9601_04301	-	hypothetical protein
432	 26.44	-1	372036..372920	+	294	123967968	-	A9601_04311	-	hypothetical protein
433	 27.68	0	372921..373733	+	270	123967969	-	A9601_04321	-	hypothetical protein
434	 33.81	0	373751..375847	-	698	123967970	dcm	A9601_04331	-	DNA-cytosine methyltransferase
435	 37.11	+1	375844..376557	-	237	123967971	-	A9601_04341	-	hypothetical protein
436	 38.76	+1	376554..377585	-	343	123967972	-	A9601_04351	-	hypothetical protein
437	 41.68	+2	377588..379552	-	654	123967973	-	A9601_04361	-	hypothetical protein
438	 43.27	+2	379721..380686	-	321	123967974	-	A9601_04371	-	hypothetical protein
439	 27.48	0	381090..381533	+	147	123967975	aroQ	A9601_04381	-	3-dehydroquinate dehydratase
440	 34.65	0	381534..382142	+	202	123967976	miaE	A9601_04391	-	putative tRNA-(MS[2]IO[6]A)-hydroxylase-like protein
441	 31.35	0	382159..382914	+	251	123967977	cobI	A9601_04401	-	precorrin-2-C20-methyltransferase
442	 32.51	0	382914..383399	+	161	123967978	-	A9601_04411	-	hypothetical protein
443	 33.99	0	383474..384847	+	457	123967979	engA	A9601_04421	-	GTP-binding protein EngA
444	 30.05	0	384847..385761	+	304	123967980	cbiQ	A9601_04431	-	cobalt ABC transporter permease
445	 35.15	0	385781..385945	+	54	123967981	-	A9601_04441	-	hypothetical protein
446	 32.64	0	386113..386685	+	190	123967982	-	A9601_04451	-	TIM-barrel fold family protein
447	 35.59	0	386836..387411	+	191	123967983	-	A9601_04461	-	hypothetical protein
448	 29.27	0	387419..388231	+	270	123967984	proC	A9601_04471	-	Delta 1-pyrroline-5-carboxylate reductase
449	 34.02	0	388237..389394	-	385	123967985	-	A9601_04481	-	putative glycosyl transferase, group 1
450	 34.22	0	389480..390265	-	261	123967986	recO	A9601_04491	-	putative recombination protein O
451	 28.94	0	390266..390925	-	219	123967987	deoC	A9601_04501	-	putative deoxyribose-phosphate aldolase
452	 28.72	0	390933..391517	-	194	123967988	lrtA	A9601_04511	-	light repressed protein A
453	 26.42	-1	391562..392212	+	216	123967989	lipB	A9601_04521	-	putative lipoate-protein ligase B
454	 30.92	0	392240..394183	+	647	123967990	fadD	A9601_04531	-	putative long-chain-fatty-acid--CoA ligase
455	 35.36	0	394222..394665	+	147	123967991	-	A9601_04541	-	hypothetical protein
456	 37.57	+1	394884..396251	+	455	123967992	pdhC	A9601_04551	-	branched-chain alpha-keto acid dehydrogenase subunit E2
457	 29.24	0	396258..397382	+	374	123967993	queA	A9601_04561	-	queuosine biosynthesis protein
458	 38.60	+1	397385..398371	-	328	123967994	-	A9601_04571	-	O-acetylserine (thiol)-lyase A
459	 29.66	0	398456..399925	-	489	123967995	-	A9601_04581	-	putative cystathionine gamma-synthase
460	 33.33	0	399929..401092	-	387	123967996	metB	A9601_04591	-	putative cystathionine gamma-synthase
461	 39.08	+1	401169..401777	-	202	123967997	rpsD	A9601_04601	-	30S ribosomal protein S4
462	 39.06	+1	401918..402109	+	63	123967998	-	A9601_04611	-	hypothetical protein
463	 28.05	0	402114..402416	+	100	123967999	-	A9601_04621	-	thioredoxin family protein
464	 29.69	0	402426..403961	+	511	123968000	murE	A9601_04631	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
465	 32.06	0	404043..404747	+	234	123968001	-	A9601_04641	-	putative short chain dehydrogenase
466	 29.42	0	404775..405950	-	391	123968002	-	A9601_04651	-	putative L-cysteine/cystine lyase
467	 32.20	0	405987..406781	-	264	123968003	-	A9601_04661	-	putative methyltransferase
468	 33.33	0	406859..407050	-	63	123968004	-	A9601_04671	-	hypothetical protein
469	 28.29	0	407289..407546	+	85	123968005	-	A9601_04681	-	hypothetical protein
470	 36.59	+1	407569..407814	-	81	123968006	-	A9601_04691	-	NifU-like protein
471	 30.79	0	407885..409381	+	498	123968007	mqo	A9601_04701	-	malate:quinone oxidoreductase
472	 34.38	0	409437..411245	+	602	123968008	lepA	A9601_04711	-	GTP-binding protein LepA
473	 34.52	0	411415..412170	+	251	123968009	dppC	A9601_04721	-	putative ABC transporter, oligopeptides
474	 31.40	0	412173..412844	-	223	123968010	-	A9601_04731	-	tRNA/rRNA methyltransferase (SpoU)
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.