IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
336	 37.12	+1	307761..309002	-	413	123967872	metK	A9601_03351	-	S-adenosylmethionine synthetase
337	 37.36	+1	309140..310231	-	363	123967873	rps1a	A9601_03361	-	30S ribosomal protein S1
338	 32.71	0	310341..310820	-	159	123967874	-	A9601_03371	-	transcriptional regulator NrdR
339	 40.40	+2	310913..311011	-	32	123967875	psbT	A9601_03381	-	photosystem II reaction center protein T
340	 41.14	+2	311035..312558	-	507	123967876	psbB	A9601_03391	-	photosystem II PsbB protein (CP47)
341	 34.71	0	312781..313143	+	120	123967877	fdx	A9601_03401	-	ferredoxin
342	 37.91	+1	313249..313401	+	50	123967878	psbM	A9601_03411	-	photosystem II reaction center M protein (PsbM)
343	 30.00	0	313413..314282	+	289	123967879	hemK	A9601_03421	-	putative protein methyltransferase
344	 36.08	+1	314306..314887	+	193	123967880	sua5	A9601_03431	-	putative translation factor (SUA5)
345	 32.11	0	315202..315528	-	108	123967881	minE	A9601_03441	-	septum site-determining protein MinE
346	 36.11	+1	315530..316357	-	275	123967882	minD	A9601_03451	-	putative septum site-determining protein MinD
347	 27.75	0	316457..317119	-	220	123967883	-	A9601_03461	-	septum site-determining protein
348	 29.44	0	317130..318386	-	418	123967884	-	A9601_03471	-	HD superfamily phosphohydrolase
349	 36.34	+1	318414..319709	-	431	123967885	-	A9601_03481	-	carboxyl-terminal protease
350	 38.05	+1	319781..320437	+	218	123967886	petB	A9601_03491	-	cytochrome b6
351	 34.78	0	320471..320953	+	160	123967887	petD	A9601_03501	-	cytochrome b6-f complex subunit IV
352	 35.76	0	320956..322395	-	479	123967888	-	A9601_03511	-	putative neutral invertase-like protein
353	 30.63	0	322657..322767	-	36	123967889	-	A9601_03521	-	hypothetical protein
354	 30.91	0	322661..322825	+	54	123967890	-	A9601_03531	-	hypothetical protein
355	 31.06	0	328123..329001	-	292	123967891	mutM	A9601_03541	-	formamidopyrimidine-DNA glycolase (Fapy-DNA glycolase)
356	 34.76	0	329006..329215	-	69	123967892	psaE	A9601_03551	-	photosystem I reaction center subunit IV
357	 21.92	-2	329296..330057	-	253	123967893	-	A9601_03561	-	LysM domain-containing protein
358	 28.66	0	330130..331521	-	463	123967894	-	A9601_03571	-	putative aldehyde dehydrogenase
359	 35.02	0	331678..332568	+	296	123967895	-	A9601_03581	-	GCN5-related N-acetyltransferase
360	 36.55	+1	332639..332887	-	82	123967896	-	A9601_03591	-	hypothetical protein
361	 30.11	0	332989..333081	+	30	123967897	-	A9601_03601	-	hypothetical protein
362	 31.06	0	333099..333230	-	43	123967898	-	A9601_03611	-	hypothetical protein
363	 38.41	+1	333342..333479	-	45	123967899	-	A9601_03621	-	hypothetical protein
364	 28.07	0	333596..333709	-	37	123967900	-	A9601_03631	-	hypothetical protein
365	 25.52	-1	333845..334279	+	144	123967901	-	A9601_03641	-	NADH-plastoquinone oxidoreductase chain 5-like
366	 29.02	0	334276..334785	-	169	123967902	-	A9601_03651	-	hypothetical protein
367	 28.37	0	334941..335081	+	46	123967903	-	A9601_03661	-	hypothetical protein
368	 34.63	0	335352..335660	-	102	123967904	-	A9601_03671	-	hypothetical protein
369	 27.05	-1	335960..336166	+	68	123967905	-	A9601_03681	-	hypothetical protein
370	 35.05	0	336257..336547	+	96	123967906	-	A9601_03691	-	hypothetical protein
371	 33.33	0	336559..336762	-	67	123967907	-	A9601_03701	-	hypothetical protein
372	 33.07	0	336880..338409	-	509	123967908	-	A9601_03711	-	phytoene dehydrogenase
373	 33.33	0	338449..338559	-	36	123967909	-	A9601_03721	-	hypothetical protein
374	 30.04	0	338741..339226	+	161	123967910	-	A9601_03731	-	hypothetical protein
375	 33.33	0	339228..339443	-	71	123967911	-	A9601_03741	-	hypothetical protein
376	 29.87	0	339535..339852	+	105	123967912	-	A9601_03751	-	helper component proteinase
377	 32.82	0	339854..340246	-	130	123967913	-	A9601_03761	-	hypothetical protein
378	 29.59	0	340251..340517	-	88	123967914	-	A9601_03771	-	mttA/Hcf106 family protein
379	 18.12	-2	340608..340745	-	45	123967915	-	A9601_03781	-	hypothetical protein
380	 27.92	0	340926..341165	+	79	123967916	-	A9601_03791	-	hypothetical protein
381	 15.91	-2	341184..341315	-	43	123967917	-	A9601_03801	-	hypothetical protein
382	 32.89	0	341466..341915	+	149	123967918	-	A9601_03811	-	putative bacterioferritin comigratory protein
383	 31.87	0	341982..342254	+	90	123967919	-	A9601_03821	-	hypothetical protein
384	 31.01	0	342351..342695	-	114	123967920	-	A9601_03831	-	hypothetical protein
385	 30.13	0	342923..343297	-	124	123967921	-	A9601_03841	-	hypothetical protein
386	 26.48	-1	343362..343799	+	145	123967922	-	A9601_03851	-	hypothetical protein
387	 29.32	0	343854..344102	+	82	123967923	-	A9601_03861	-	TIR domain-containing protein
388	 24.81	-1	344208..344336	-	42	123967924	-	A9601_03871	-	hypothetical protein
389	 26.64	-1	344383..345249	-	288	123967925	-	A9601_03881	-	abortive infection protein
390	 24.58	-1	345345..346178	-	277	123967926	-	A9601_03891	-	glycosyl transferase family protein
391	 27.73	0	346275..347042	+	255	123967927	-	A9601_03901	-	glycosyl transferase
392	 30.49	0	348325..349275	+	316	123967928	-	A9601_03911	-	proline iminopeptidase
393	 35.06	0	349299..349472	-	57	123967929	-	A9601_03921	-	hypothetical protein
394	 28.32	0	349600..351096	-	498	123967930	-	A9601_03931	-	putative deoxyribodipyrimidine photolyase
395	 28.53	0	351184..351807	+	207	123967931	-	A9601_03941	-	TENA/THI-4 protein
396	 33.33	0	351857..352636	+	259	123967932	thiD	A9601_03951	-	phosphomethylpyrimidine kinase
397	 37.74	+1	352655..352813	-	52	123967933	-	A9601_03961	-	hypothetical protein
398	 26.39	-1	353023..353166	+	47	123967934	-	A9601_03971	-	hypothetical protein
399	 32.69	0	353246..353713	+	155	123967935	-	A9601_03981	-	hypothetical protein
400	 30.16	0	353784..354161	+	125	123967936	-	A9601_03991	-	phosphoenolpyruvate carboxykinase
401	 35.52	0	354198..354380	-	60	123967937	-	A9601_04001	-	hypothetical protein
402	 32.98	0	354616..354900	+	94	123967938	-	A9601_04011	-	hypothetical protein
403	 28.67	0	355379..355678	+	99	123967939	-	A9601_04021	-	hypothetical protein
404	 33.33	0	355675..355860	-	61	123967940	-	A9601_04031	-	hypothetical protein
405	 34.81	0	355889..356023	-	44	123967941	-	A9601_04041	-	hypothetical protein
406	 36.46	+1	356249..356440	-	63	123967942	-	A9601_04051	-	hypothetical protein
407	 40.87	+2	356786..357037	+	83	123967943	-	A9601_04061	-	hypothetical protein
408	 23.78	-1	357102..357530	+	142	123967944	-	A9601_04071	-	hypothetical protein
409	 31.85	0	357437..357571	-	44	123967945	-	A9601_04081	-	hypothetical protein
410	 28.85	0	357578..357733	-	51	123967946	-	A9601_04091	-	hypothetical protein
411	 30.95	0	357864..358115	+	83	123967947	-	A9601_04101	-	hypothetical protein
412	 31.43	0	358105..358314	+	69	123967948	-	A9601_04111	-	hypothetical protein
413	 33.06	0	358557..358919	+	120	123967949	-	A9601_04121	-	hypothetical protein
414	 26.67	-1	359042..359296	-	84	123967950	-	A9601_04131	-	hypothetical protein
415	 25.32	-1	359367..359603	+	78	123967951	-	A9601_04141	-	hypothetical protein
416	 26.67	-1	359740..359934	+	64	123967952	-	A9601_04151	-	hypothetical protein
417	 33.86	0	360061..360825	-	254	123967953	-	A9601_04161	-	putative dehydrogenase
418	 33.22	0	361007..361858	+	283	123967954	-	A9601_04171	-	hypothetical protein
419	 30.20	0	361948..362202	+	84	123967955	-	A9601_04181	-	hypothetical protein
420	 30.70	0	362468..362695	-	75	123967956	-	A9601_04191	-	hypothetical protein
421	 34.48	0	362696..362956	-	86	123967957	-	A9601_04201	-	high light inducible protein
422	 37.62	+1	362956..363165	-	69	123967958	-	A9601_04211	-	high light inducible protein
423	 40.14	+1	363383..363529	+	48	123967959	-	A9601_04221	-	hypothetical protein
424	 35.73	0	363566..364066	-	166	123967960	-	A9601_04231	-	hypothetical protein
425	 31.28	0	364066..364260	-	64	123967961	-	A9601_04241	-	hypothetical protein
426	 42.66	+2	364502..365284	+	260	123967962	-	A9601_04251	-	periplasmic protein
427	 37.57	+1	365384..365572	-	62	123967963	-	A9601_04261	-	hypothetical protein
428	 29.71	0	365886..366299	+	137	123967964	vsr	A9601_04271	-	hypothetical protein
429	 28.60	0	366365..369070	+	901	123967965	-	A9601_04281	-	hypothetical protein
430	 25.44	-1	369074..370048	+	324	123967966	-	A9601_04291	-	hypothetical protein
431	 32.07	0	370048..372033	+	661	123967967	-	A9601_04301	-	hypothetical protein
432	 26.44	-1	372036..372920	+	294	123967968	-	A9601_04311	-	hypothetical protein
433	 27.68	0	372921..373733	+	270	123967969	-	A9601_04321	-	hypothetical protein
434	 33.81	0	373751..375847	-	698	123967970	dcm	A9601_04331	-	DNA-cytosine methyltransferase
435	 37.11	+1	375844..376557	-	237	123967971	-	A9601_04341	-	hypothetical protein
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.