IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1591	 44.44	+2	1358170..1358277	+	35	123969127	-	A9601_15951	-	high light inducible protein
1592	 34.04	0	1358277..1358417	+	46	123969128	-	A9601_15961	-	high light inducible protein
1593	 27.13	0	1358836..1358964	+	42	123969129	-	A9601_15971	-	hypothetical protein
1594	 38.16	+1	1359074..1359280	-	68	123969130	-	A9601_15981	-	high light inducible protein
1595	 28.67	0	1359918..1360067	-	49	123969131	-	A9601_15991	-	hypothetical protein
1596	 30.68	0	1360215..1361420	+	401	123969132	-	A9601_16001	-	putative permease
1597	 27.01	-1	1361493..1362077	-	194	123969133	-	A9601_16011	-	hypothetical protein
1598	 31.25	0	1362162..1362305	-	47	123969134	-	A9601_16021	-	hypothetical protein
1599	 20.78	-2	1362861..1363346	-	161	123969135	-	A9601_16031	-	hypothetical protein
1600	 22.81	-1	1363525..1363638	-	37	123969136	-	A9601_16041	-	hypothetical protein
1601	 27.30	0	1363538..1363918	+	126	123969137	-	A9601_16051	-	hypothetical protein
1602	 30.26	0	1363950..1364144	-	64	123969138	-	A9601_16061	-	hypothetical protein
1603	 24.39	-1	1364187..1364309	-	40	123969139	-	A9601_16071	-	hypothetical protein
1604	 31.78	0	1364431..1364817	+	128	123969140	-	A9601_16081	-	hypothetical protein
1605	 22.22	-2	1365669..1365785	-	38	123969141	-	A9601_16091	-	hypothetical protein
1606	 29.11	0	1366454..1366666	+	70	123969142	-	A9601_16101	-	hypothetical protein
1607	 22.08	-2	1366887..1368494	+	535	123969143	-	A9601_16111	-	hypothetical protein
1608	 29.90	0	1368615..1368818	+	67	123969144	-	A9601_16121	-	hypothetical protein
1609	 30.77	0	1368895..1369050	+	51	123969145	-	A9601_16131	-	hypothetical protein
1610	 34.19	0	1369201..1369317	+	38	123969146	-	A9601_16141	-	hypothetical protein
1611	 21.28	-2	1369314..1369454	+	46	123969147	-	A9601_16151	-	hypothetical protein
1612	 28.07	0	1369564..1369677	+	37	123969148	-	A9601_16161	-	hypothetical protein
1613	 23.58	-1	1369732..1369854	-	40	123969149	-	A9601_16171	-	hypothetical protein
1614	 27.45	0	1369916..1370068	+	50	123969150	-	A9601_16181	-	hypothetical protein
1615	 26.53	-1	1370271..1370417	+	48	123969151	-	A9601_16191	-	hypothetical protein
1616	 31.21	0	1370497..1371015	+	172	123969152	-	A9601_16201	-	hemagglutinin-neuraminidase
1617	 29.99	0	1371017..1371883	+	288	123969153	-	A9601_16211	-	dehydrogenase
1618	 26.50	-1	1371924..1372040	-	38	123969154	-	A9601_16221	-	hypothetical protein
1619	 30.99	0	1372672..1372842	-	56	123969155	-	A9601_16231	-	hypothetical protein
1620	 24.07	-1	1372839..1372946	-	35	123969156	-	A9601_16241	-	hypothetical protein
1621	 30.41	0	1373137..1373307	+	56	123969157	-	A9601_16251	-	hypothetical protein
1622	 33.65	0	1373335..1373649	-	104	123969158	-	A9601_16261	-	hypothetical protein
1623	 28.84	0	1373938..1375671	-	577	123969159	-	A9601_16271	-	hypothetical protein
1624	 30.84	0	1375872..1376393	-	173	123969160	-	A9601_16281	-	hypothetical protein
1625	 32.99	0	1376539..1376829	+	96	123969161	-	A9601_16291	-	hypothetical protein
1626	 28.32	0	1377907..1378365	+	152	123969162	-	A9601_16301	-	hypothetical protein
1627	 30.16	0	1378372..1378623	-	83	123969163	-	A9601_16311	-	hypothetical protein
1628	 29.30	0	1378932..1379303	-	123	123969164	-	A9601_16321	-	hypothetical protein
1629	 32.49	0	1379306..1379542	-	78	123969165	rpoZ	A9601_16331	-	DNA-directed RNA polymerase subunit omega
1630	 29.57	0	1379642..1381210	+	522	123969166	-	A9601_16341	-	HSP70 family molecular chaperone
1631	 31.85	0	1381214..1381753	-	179	123969167	pyrR	A9601_16351	-	pyrimidine regulatory protein PyrR
1632	 33.70	0	1381892..1383514	+	540	123969168	gpmI	A9601_16361	-	phosphoglyceromutase
1633	 36.40	+1	1383538..1383765	+	75	123969169	secG	A9601_16371	-	preprotein translocase subunit SecG
1634	 38.95	+1	1383834..1385471	-	545	123969170	groEL	A9601_16381	-	chaperonin GroEL
1635	 40.71	+2	1385523..1385834	-	103	123969171	groES	A9601_16391	-	co-chaperonin GroES
1636	 39.36	+1	1386054..1387514	+	486	123969172	atpD	A9601_16401	-	F0F1 ATP synthase subunit beta
1637	 33.33	0	1387557..1387961	+	134	123969173	atpC	A9601_16411	-	F0F1 ATP synthase subunit epsilon
1638	 36.06	+1	1387965..1388441	-	158	123969174	-	A9601_16421	-	hypothetical protein
1639	 38.36	+1	1388548..1388706	-	52	123969175	-	A9601_16431	-	hypothetical protein
1640	 35.52	0	1388760..1390085	-	441	123969176	pepP	A9601_16441	-	putative aminopeptidase P
1641	 32.72	0	1390160..1391143	+	327	123969177	-	A9601_16451	-	hypothetical protein
1642	 26.09	-1	1391140..1392381	+	413	123969178	-	A9601_16461	-	GTPase SAR1
1643	 27.12	0	1392390..1392968	+	192	123969179	nadD	A9601_16471	-	nicotinic acid mononucleotide adenylyltransferase
1644	 31.21	0	1392965..1394662	+	565	123969180	nadE	A9601_16481	-	carbon-nitrogen hydrolase:NAD+ synthase
1645	 33.90	0	1394656..1395717	-	353	123969181	-	A9601_16491	-	hypothetical protein
1646	 21.88	-2	1395745..1395936	-	63	123969182	-	A9601_16501	-	hypothetical protein
1647	 32.11	0	1395933..1396259	-	108	123969183	-	A9601_16511	-	ferredoxin
1648	 35.33	0	1396276..1397226	-	316	123969184	-	A9601_16521	-	F0F1 ATP synthase subunit gamma
1649	 38.21	+1	1397246..1398763	-	505	123969185	atpA	A9601_16531	-	F0F1 ATP synthase subunit alpha
1650	 34.81	0	1398795..1399337	-	180	123969186	atpH	A9601_16541	-	F0F1 ATP synthase subunit delta
1651	 33.33	0	1399337..1399849	-	170	123969187	-	A9601_16551	-	F0F1 ATP synthase subunit B
1652	 33.77	0	1399846..1400307	-	153	123969188	-	A9601_16561	-	F0F1 ATP synthase subunit B'
1653	 43.90	+2	1400376..1400621	-	81	123969189	atpE	A9601_16571	-	F0F1 ATP synthase subunit C
1654	 34.44	0	1400787..1401512	-	241	123969190	atpB	A9601_16581	-	F0F1 ATP synthase subunit A
1655	 30.19	0	1401536..1402012	-	158	123969191	atp1	A9601_16591	-	ATP synthase subunit 1
1656	 31.31	0	1402280..1403515	+	411	123969192	-	A9601_16601	-	cell division protein FtsW
1657	 35.31	0	1403598..1404254	+	218	123969193	ccdA	A9601_16611	-	putative c-type cytochrome biogenesis protein CcdA
1658	 27.35	0	1404255..1405541	+	428	123969194	resB	A9601_16621	-	putative c-type cytochrome biogenesis protein Ccs1
1659	 29.44	0	1405538..1405948	-	136	123969195	-	A9601_16631	-	7-cyano-7-deazaguanine reductase
1660	 31.71	0	1406138..1406383	+	81	123969196	-	A9601_16641	-	hypothetical protein
1661	 34.22	0	1406408..1406746	+	112	123969197	glnB	A9601_16651	-	nitrogen regulatory protein P-II
1662	 31.61	0	1406748..1407560	-	270	123969198	-	A9601_16661	-	rRNA methyltransferase
1663	 35.34	0	1407842..1409137	+	431	123969199	purB	A9601_16671	-	adenylosuccinate lyase
1664	 32.03	0	1409186..1410571	+	461	123969200	fumC	A9601_16681	-	fumarate hydratase
1665	 31.39	0	1410582..1413308	-	908	123969201	-	A9601_16691	-	putative DNA helicase
1666	 33.16	0	1413448..1414587	+	379	123969202	bioF	A9601_16701	-	putative 8-amino-7-oxononanoate synthase
1667	 22.98	-1	1414584..1415288	+	234	123969203	-	A9601_16711	-	hypothetical protein
1668	 26.88	-1	1415290..1416048	+	252	123969204	-	A9601_16721	-	methylase involved in ubiquinone/menaquinone biosynthesis
1669	 30.93	0	1416045..1416710	+	221	123969205	bioD	A9601_16731	-	putative dethiobiotin synthase
1670	 34.79	0	1416711..1418012	+	433	123969206	bioA	A9601_16741	-	putative diaminopelargonic acid synthase
1671	 32.17	0	1418021..1418278	-	85	123969207	-	A9601_16751	-	hypothetical protein
1672	 26.30	-1	1418295..1418735	-	146	123969208	-	A9601_16761	-	DnaJ-like protein
1673	 28.29	0	1418825..1419538	+	237	123969209	gidB	A9601_16771	-	putative glucose inhibited division protein B
1674	 31.57	0	1419541..1420734	-	397	123969210	-	A9601_16781	-	aldo/keto reductase
1675	 37.50	+1	1420745..1421104	-	119	123969211	fer	A9601_16791	-	hypothetical protein
1676	 30.28	0	1421114..1421506	-	130	123969212	-	A9601_16801	-	hypothetical protein
1677	 32.41	0	1421493..1421708	-	71	123969213	-	A9601_16811	-	hypothetical protein
1678	 33.46	0	1421856..1422623	-	255	123969214	-	A9601_16821	-	hypothetical protein
1679	 34.01	0	1422642..1422788	-	48	123969215	-	A9601_16831	-	hypothetical protein
1680	 33.33	0	1422649..1422816	+	55	123969216	-	A9601_16841	-	hypothetical protein
1681	 31.23	0	1422837..1423883	-	348	123969217	-	A9601_16851	-	putative Fe-S-cluster redox protein
1682	 32.68	0	1423912..1424064	-	50	123969218	hli3	A9601_16861	-	putative high light inducible protein
1683	 36.60	+1	1424120..1428220	-	1366	123969219	rpoC2	A9601_16871	-	DNA-directed RNA polymerase subunit beta'
1684	 36.85	+1	1428254..1430158	-	634	123969220	rpoC1	A9601_16881	-	DNA-directed RNA polymerase subunit gamma
1685	 37.98	+1	1430197..1433490	-	1097	123969221	rpoB	A9601_16891	-	DNA-directed RNA polymerase subunit beta
1686	 32.58	0	1433727..1434521	-	264	123969222	tatD	A9601_16901	-	TatD family deoxyribonuclease
1687	 26.19	-1	1434539..1434832	-	97	123969223	rpsT	A9601_16911	-	30S ribosomal protein S20
1688	 33.18	0	1434952..1436238	+	428	123969224	hisD	A9601_16921	-	histidinol dehydrogenase
1689	 34.91	0	1436235..1436930	-	231	123969225	rpiA	A9601_16931	-	ribose 5-phosphate isomerase
1690	 35.90	0	1436996..1438126	-	376	123969226	-	A9601_16941	-	trypsin-like serine protease
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.