IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1517	 30.86	0	1301625..1301786	+	53	123969053	-	A9601_15211	-	hypothetical protein
1518	 31.81	0	1302144..1304177	+	677	123969054	glgX	A9601_15221	-	putative isoamylase
1519	 34.82	0	1304362..1305708	+	448	123969055	melB	A9601_15231	-	GPH family sugar transporter
1520	 35.71	0	1305718..1306473	+	251	123969056	-	A9601_15241	-	putative transporter, membrane component
1521	 27.58	0	1306466..1306882	+	138	123969057	-	A9601_15251	-	hypothetical protein
1522	 32.15	0	1306918..1307928	+	336	123969058	-	A9601_15261	-	hypothetical protein
1523	 30.64	0	1307934..1308527	+	197	123969059	-	A9601_15271	-	hypothetical protein
1524	 30.04	0	1308511..1309239	-	242	123969060	pyrF	A9601_15281	-	orotidine 5'-phosphate decarboxylase
1525	 31.64	0	1309246..1310484	-	412	123969061	tyrS	A9601_15291	-	tyrosyl-tRNA synthetase
1526	 29.63	0	1310503..1310826	-	107	123969062	-	A9601_15301	-	hypothetical protein
1527	 28.92	0	1310979..1311590	+	203	123969063	-	A9601_15311	-	hypothetical protein
1528	 34.08	0	1311615..1313087	+	490	123969064	pepB	A9601_15321	-	leucyl aminopeptidase
1529	 34.99	0	1313099..1313701	-	200	123969065	-	A9601_15331	-	peptide methionine sulfoxide reductase
1530	 30.36	0	1313718..1314896	-	392	123969066	lpxB	A9601_15341	-	lipid-A-disaccharide synthase
1531	 33.57	0	1314893..1315735	-	280	123969067	lpxA	A9601_15351	-	UDP-N-acetylglucosamine acyltransferase
1532	 36.17	+1	1315740..1316198	-	152	123969068	fabZ	A9601_15361	-	(3R)-hydroxymyristoyl-ACP dehydratase
1533	 33.33	0	1316216..1317052	-	278	123969069	lpxC	A9601_15371	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1534	 33.57	0	1317053..1319191	-	712	123969070	-	A9601_15381	-	outer envelope membrane protein-like protein
1535	 28.62	0	1319228..1319545	-	105	123969071	-	A9601_15391	-	hypothetical protein
1536	 22.64	-1	1319801..1319959	-	52	123969072	-	A9601_15401	-	hypothetical protein
1537	 31.91	0	1320104..1321435	+	443	123969073	purD	A9601_15411	-	phosphoribosylglycinamide synthetase
1538	 35.85	0	1321440..1323506	+	688	123969074	nblS	A9601_15421	-	two-component sensor histidine kinase
1539	 34.51	0	1323503..1325032	-	509	123969075	kaiC	A9601_15431	-	circadian clock protein KaiC
1540	 33.02	0	1325093..1325410	-	105	123969076	kaiB	A9601_15441	-	circadian clock protein KaiB
1541	 30.14	0	1325495..1325995	+	166	123969077	rplU	A9601_15451	-	50S ribosomal protein L21
1542	 34.48	0	1326005..1326265	+	86	123969078	rpmA	A9601_15461	-	50S ribosomal protein L27
1543	 30.96	0	1326258..1326932	-	224	123969079	-	A9601_15471	-	hypothetical protein
1544	 30.63	0	1327075..1327998	+	307	123969080	truB	A9601_15481	-	putative tRNA pseudouridine 55 synthase
1545	 28.91	0	1328002..1329177	-	391	123969081	spoIID	A9601_15491	-	sporulation protein SpoIID
1546	 33.76	0	1329266..1330204	+	312	123969082	elaC	A9601_15501	-	metallo-beta-lactamase superfamily protein
1547	 34.22	0	1330279..1330839	+	186	123969083	-	A9601_15511	-	pentapeptide repeat-containing protein
1548	 37.94	+1	1330849..1331217	-	122	123969084	-	A9601_15521	-	hypothetical protein
1549	 39.00	+1	1331296..1331595	-	99	123969085	-	A9601_15531	-	ferredoxin
1550	 29.28	0	1331730..1332641	-	303	123969086	prmA	A9601_15541	-	putative methyltransferase for ribosomal protein L11
1551	 37.56	+1	1332660..1334246	-	528	123969087	serA	A9601_15551	-	D-3-phosphoglycerate dehydrogenase
1552	 29.63	0	1334346..1334912	+	188	123969088	-	A9601_15561	-	hypothetical protein
1553	 29.67	0	1334913..1335704	+	263	123969089	-	A9601_15571	-	S4-like domain-containing protein
1554	 27.99	0	1335893..1336510	+	205	123969090	-	A9601_15581	-	steroid 5-alpha reductase C-terminal domain-containing protein
1555	 30.98	0	1336503..1337054	+	183	123969091	-	A9601_15591	-	hypothetical protein
1556	 28.74	0	1337129..1337302	+	57	123969092	-	A9601_15601	-	hypothetical protein
1557	 34.24	0	1337294..1337845	-	183	123969093	-	A9601_15611	-	hypothetical protein
1558	 26.75	-1	1337981..1339135	-	384	123969094	-	A9601_15621	-	DNA photolyase-like protein
1559	 29.60	0	1339412..1340161	+	249	123969095	-	A9601_15631	-	NAD-dependent DNA ligase N-terminus
1560	 33.12	0	1340270..1341199	+	309	123969096	-	A9601_15641	-	short-chain dehydrogenase/reductase
1561	 26.97	-1	1341194..1341460	-	88	123969097	-	A9601_15651	-	hypothetical protein
1562	 28.86	0	1341561..1342991	+	476	123969098	murD	A9601_15661	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1563	 30.84	0	1343077..1343397	+	106	123969099	-	A9601_15671	-	MATH domain-containing protein
1564	 28.96	0	1343406..1344137	-	243	123969100	-	A9601_15681	-	hypothetical protein
1565	 20.93	-2	1344225..1344353	-	42	123969101	-	A9601_15691	-	hypothetical protein
1566	 25.14	-1	1344436..1344972	-	178	123969102	-	A9601_15701	-	hypothetical protein
1567	 33.74	0	1344969..1345454	-	161	123969103	-	A9601_15711	-	hypothetical protein
1568	 31.20	0	1345543..1346292	-	249	123969104	-	A9601_15721	-	GAF domain-containing protein
1569	 31.95	0	1346394..1347626	-	410	123969105	-	A9601_15731	-	flavoprotein
1570	 27.43	0	1347812..1348048	+	78	123969106	-	A9601_15741	-	hypothetical protein
1571	 27.95	0	1348186..1349058	+	290	123969107	-	A9601_15751	-	hypothetical protein
1572	 23.08	-1	1349136..1349252	+	38	123969108	-	A9601_15761	-	hypothetical protein
1573	 21.43	-2	1349313..1349480	+	55	123969109	-	A9601_15771	-	hypothetical protein
1574	 37.32	+1	1349506..1349781	+	91	123969110	-	A9601_15781	-	hypothetical protein
1575	 25.73	-1	1349874..1350044	+	56	123969111	-	A9601_15791	-	hypothetical protein
1576	 29.51	0	1350111..1350293	-	60	123969112	-	A9601_15801	-	hypothetical protein
1577	 38.89	+1	1350524..1350703	+	59	123969113	-	A9601_15811	-	hypothetical protein
1578	 27.88	0	1351178..1351342	+	54	123969114	-	A9601_15821	-	hypothetical protein
1579	 31.25	0	1351410..1351745	+	111	123969115	-	A9601_15831	-	hypothetical protein
1580	 27.99	0	1351757..1352074	-	105	123969116	-	A9601_15841	-	type I restriction modification DNA specificity domain-containing protein
1581	 26.94	-1	1352285..1352503	+	72	123969117	-	A9601_15851	-	hypothetical protein
1582	 26.92	-1	1352589..1352744	+	51	123969118	-	A9601_15861	-	hypothetical protein
1583	 28.91	0	1352826..1353932	+	368	123969119	-	A9601_15871	-	Fatty acid desaturase, type 2
1584	 30.72	0	1353936..1354088	-	50	123969120	-	A9601_15881	-	hypothetical protein
1585	 32.08	0	1354378..1354536	+	52	123969121	-	A9601_15891	-	hypothetical protein
1586	 28.40	0	1354520..1354681	+	53	123969122	-	A9601_15901	-	hypothetical protein
1587	 27.66	0	1354822..1354962	-	46	123969123	-	A9601_15911	-	hypothetical protein
1588	 34.98	0	1355480..1356514	+	344	123969124	-	A9601_15921	-	fatty acid desaturase, type 2
1589	 30.86	0	1356764..1356925	+	53	123969125	-	A9601_15931	-	hypothetical protein
1590	 32.69	0	1356970..1357593	-	207	123969126	-	A9601_15941	-	hypothetical protein
1591	 44.44	+2	1358170..1358277	+	35	123969127	-	A9601_15951	-	high light inducible protein
1592	 34.04	0	1358277..1358417	+	46	123969128	-	A9601_15961	-	high light inducible protein
1593	 27.13	0	1358836..1358964	+	42	123969129	-	A9601_15971	-	hypothetical protein
1594	 38.16	+1	1359074..1359280	-	68	123969130	-	A9601_15981	-	high light inducible protein
1595	 28.67	0	1359918..1360067	-	49	123969131	-	A9601_15991	-	hypothetical protein
1596	 30.68	0	1360215..1361420	+	401	123969132	-	A9601_16001	-	putative permease
1597	 27.01	-1	1361493..1362077	-	194	123969133	-	A9601_16011	-	hypothetical protein
1598	 31.25	0	1362162..1362305	-	47	123969134	-	A9601_16021	-	hypothetical protein
1599	 20.78	-2	1362861..1363346	-	161	123969135	-	A9601_16031	-	hypothetical protein
1600	 22.81	-1	1363525..1363638	-	37	123969136	-	A9601_16041	-	hypothetical protein
1601	 27.30	0	1363538..1363918	+	126	123969137	-	A9601_16051	-	hypothetical protein
1602	 30.26	0	1363950..1364144	-	64	123969138	-	A9601_16061	-	hypothetical protein
1603	 24.39	-1	1364187..1364309	-	40	123969139	-	A9601_16071	-	hypothetical protein
1604	 31.78	0	1364431..1364817	+	128	123969140	-	A9601_16081	-	hypothetical protein
1605	 22.22	-2	1365669..1365785	-	38	123969141	-	A9601_16091	-	hypothetical protein
1606	 29.11	0	1366454..1366666	+	70	123969142	-	A9601_16101	-	hypothetical protein
1607	 22.08	-2	1366887..1368494	+	535	123969143	-	A9601_16111	-	hypothetical protein
1608	 29.90	0	1368615..1368818	+	67	123969144	-	A9601_16121	-	hypothetical protein
1609	 30.77	0	1368895..1369050	+	51	123969145	-	A9601_16131	-	hypothetical protein
1610	 34.19	0	1369201..1369317	+	38	123969146	-	A9601_16141	-	hypothetical protein
1611	 21.28	-2	1369314..1369454	+	46	123969147	-	A9601_16151	-	hypothetical protein
1612	 28.07	0	1369564..1369677	+	37	123969148	-	A9601_16161	-	hypothetical protein
1613	 23.58	-1	1369732..1369854	-	40	123969149	-	A9601_16171	-	hypothetical protein
1614	 27.45	0	1369916..1370068	+	50	123969150	-	A9601_16181	-	hypothetical protein
1615	 26.53	-1	1370271..1370417	+	48	123969151	-	A9601_16191	-	hypothetical protein
1616	 31.21	0	1370497..1371015	+	172	123969152	-	A9601_16201	-	hemagglutinin-neuraminidase
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.