IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.48   STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
104	 22.55	-2	104334..104435	-	33	123967640	-	A9601_01031	-	hypothetical protein
105	 29.03	0	104410..106035	+	541	123967641	-	A9601_01041	-	ABC transporter, ATP binding component
106	 28.47	0	106146..106289	+	47	123967642	-	A9601_01051	-	hypothetical protein
107	 31.66	0	106295..107368	-	357	123967643	-	A9601_01061	-	serine protease
108	 30.30	0	107590..107853	+	87	123967644	-	A9601_01071	-	hypothetical protein
109	 38.54	+1	107878..108261	+	127	123967645	-	A9601_01081	-	hypothetical protein
110	 36.05	+1	108332..108478	+	48	123967646	-	A9601_01091	-	high light inducible protein
111	 28.65	0	108483..108824	-	113	123967647	-	A9601_01101	-	hypothetical protein
112	 34.64	0	108836..109750	-	304	123967648	rbn	A9601_01111	-	serum resistance locus BrkB-like protein
113	 33.83	0	109842..110642	-	266	123967649	-	A9601_01121	-	inositol monophosphate family protein
114	 27.52	0	110645..112072	-	475	123967650	-	A9601_01131	-	RND family outer membrane efflux protein
115	 30.22	0	112098..113477	-	459	123967651	-	A9601_01141	-	putative Fe-S oxidoreductase
116	 31.38	0	113656..114423	+	255	123967652	-	A9601_01151	-	hypothetical protein
117	 33.75	0	114423..116090	+	555	123967653	nadB	A9601_01161	-	L-aspartate oxidase
118	 31.84	0	116080..117015	-	311	123967654	-	A9601_01171	-	hypothetical protein
119	 31.72	0	117120..118484	+	454	123967655	-	A9601_01181	-	Fe-S oxidoreductase
120	 25.23	-1	118489..118599	-	36	123967656	-	A9601_01191	-	hypothetical protein
121	 29.97	0	118646..119032	-	128	123967657	-	A9601_01201	-	hypothetical protein
122	 28.31	0	119093..120247	-	384	123967658	-	A9601_01211	-	hypothetical protein
123	 28.73	0	120265..120915	-	216	123967659	-	A9601_01221	-	RibD/RibG domain-containing protein
124	 34.20	0	120912..121838	-	308	123967660	-	A9601_01231	-	6-pyruvoyl tetrahydropterin synthase
125	 29.03	0	121889..122446	+	185	123967661	aroK	A9601_01241	-	shikimate kinase
126	 27.91	0	122443..122700	-	85	123967662	-	A9601_01251	-	hypothetical protein
127	 29.66	0	122702..123409	+	235	123967663	-	A9601_01261	-	POLO box duplicated region
128	 30.44	0	123396..124121	-	241	123967664	-	A9601_01271	-	putative glutathione S-transferase
129	 34.43	0	124148..124330	-	60	123967665	-	A9601_01281	-	hypothetical protein
130	 33.81	0	124176..124385	+	69	123967666	-	A9601_01291	-	hypothetical protein
131	 30.03	0	124385..124777	+	130	123967667	rbfA	A9601_01301	-	ribosome-binding factor A
132	 31.08	0	124764..125561	+	265	123967668	hemD	A9601_01311	-	putative uroporphyrinogen III synthase
133	 33.55	0	125554..126024	-	156	123967669	-	A9601_01321	-	putative integral membrane protein
134	 35.12	0	126028..127482	-	484	123967670	crtQ	A9601_01331	-	zeta-carotene desaturase
135	 32.58	0	127577..127975	+	132	123967671	-	A9601_01341	-	hypothetical protein
136	 33.33	0	127982..128410	+	142	123967672	-	A9601_01351	-	hypothetical protein
137	 27.68	0	128412..129614	+	400	123967673	-	A9601_01361	-	hypothetical protein
138	 24.07	-1	129607..129876	+	89	123967674	-	A9601_01371	-	hypothetical protein
139	 32.25	0	129827..130753	-	308	123967675	-	A9601_01381	-	putative cell division inhibitor
140	 34.60	0	130890..131126	+	78	123967676	-	A9601_01391	-	hypothetical protein
141	 27.68	0	131138..131845	-	235	123967677	-	A9601_01401	-	putative heat shock protein DnaJ
142	 34.67	0	131832..132800	-	322	123967678	-	A9601_01411	-	O-acetylserine (thiol)-lyase A
143	 30.47	0	132949..133227	+	92	123967679	-	A9601_01421	-	hypothetical protein
144	 30.07	0	133236..133910	+	224	123967680	-	A9601_01431	-	ABC transporter ATP-binding protein
145	 27.22	0	134361..134720	-	119	123967681	-	A9601_01441	-	signal peptide binding domain-containing protein
146	 35.63	0	135124..135906	+	260	123967682	rpaA	A9601_01451	-	two-component response regulator
147	 25.44	-1	135909..136871	-	320	123967683	holB	A9601_01461	-	DNA polymerase III subunit delta'
148	 30.83	0	136868..137506	-	212	123967684	tmk	A9601_01471	-	thymidylate kinase
149	 32.07	0	137507..139801	-	764	123967685	zntA	A9601_01481	-	putative P-type ATPase transporter for copper
150	 32.57	0	139924..140445	+	173	123967686	-	A9601_01491	-	photosystem I assembly protein Ycf3
151	 31.41	0	140451..141803	-	450	123967687	sms	A9601_01501	-	DNA repair protein RadA
152	 34.81	0	141911..142657	+	248	123967688	-	A9601_01511	-	two-component response regulator
153	 36.22	+1	142658..144076	+	472	123967689	plsX	A9601_01521	-	putative glycerol-3-phosphate acyltransferase PlsX
154	 34.72	0	144130..145137	+	335	161353819	fabH	A9601_01531	-	3-oxoacyl-(acyl carrier protein) synthase III
155	 31.22	0	145151..146047	+	298	123967691	fabD	A9601_01541	-	malonyl coenzyme A-acyl carrier protein transacylase
156	 30.27	0	146053..146673	+	206	123967692	-	A9601_01551	-	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
157	 27.98	0	146678..147331	-	217	123967693	-	A9601_01561	-	putative molecular chaperone
158	 29.76	0	147341..147592	-	83	123967694	ycf34	A9601_01571	-	putative Ycf34
159	 26.44	-1	147607..148824	+	405	123967695	-	A9601_01581	-	poly A polymerase family protein
160	 30.95	0	148883..149302	+	139	123967696	-	A9601_01591	-	RNA recognition motif-containing protein
161	 34.43	0	149303..150211	-	302	123967697	crtB	A9601_01601	-	squalene and phytoene synthase
162	 35.26	0	150251..151651	-	466	123967698	pds	A9601_01611	-	phytoene desaturase
163	 29.89	0	151742..152089	+	115	123967699	-	A9601_01621	-	NADH dehydrogenase I subunit M
164	 37.34	+1	152086..152709	+	207	123967700	-	A9601_01631	-	hypothetical protein
165	 35.77	0	152714..153658	-	314	123967701	rbcR	A9601_01641	-	putative Rubisco transcriptional regulator
166	 31.82	0	153742..154470	+	242	123967702	-	A9601_01651	-	hypothetical protein
167	 36.02	+1	154504..156516	+	670	123967703	ndhF	A9601_01661	-	NAD(P)H-quinone oxidoreductase subunit F
168	 35.14	0	156647..158251	+	534	123967704	-	A9601_01671	-	NAD(P)H-quinone oxidoreductase subunit 4
169	 33.58	0	158375..159196	+	273	123967705	-	A9601_01681	-	hypothetical protein
170	 35.45	0	159244..160422	+	392	123967706	-	A9601_01691	-	putative sugar-phosphate nucleotidyl transferase
171	 35.35	0	160406..161296	-	296	123967707	metF	A9601_01701	-	methylenetetrahydrofolate reductase
172	 34.77	0	161374..161652	+	92	123967708	csgD	A9601_01711	-	LuxR family regulatory protein
173	 30.69	0	161615..161803	-	62	123967709	-	A9601_01721	-	hypothetical protein
174	 28.69	0	161894..162367	-	157	123967710	-	A9601_01731	-	hypothetical protein
175	 29.39	0	162368..163279	-	303	123967711	ppnK	A9601_01741	-	inorganic polyphosphate/ATP-NAD kinase
176	 30.25	0	163289..163612	-	107	123967712	ndhE	A9601_01751	-	NADH dehydrogenase subunit K
177	 30.83	0	163628..164227	-	199	123967713	ndhG	A9601_01761	-	NADH dehydrogenase subunit J
178	 31.90	0	164241..164867	-	208	123967714	ndhI	A9601_01771	-	NADH dehydrogenase subunit I
179	 36.37	+1	164936..166054	-	372	123967715	ndhA	A9601_01781	-	NADH dehydrogenase subunit H
180	 37.61	+1	166130..167275	-	381	123967716	gltA	A9601_01791	-	methylcitrate synthase
181	 20.60	-2	167401..168861	-	486	123967717	-	A9601_01801	-	hypothetical protein
182	 33.05	0	168951..169301	+	116	123967718	pspE	A9601_01811	-	rhodanese-like protein
183	 38.15	+1	169302..170546	-	414	123967719	trpB	A9601_01821	-	tryptophan synthase subunit beta
184	 27.10	0	170586..170906	+	106	123967720	sui1	A9601_01831	-	translation initiation factor SUI1
185	 32.53	0	170949..171572	+	207	123967721	cysC	A9601_01841	-	adenylylsulfate kinase
186	 34.35	0	171588..172079	-	163	123967722	purE	A9601_01851	-	phosphoribosylaminoimidazole carboxylase
187	 29.49	0	172214..172915	+	233	123967723	chlM	A9601_01861	-	Mg-protoporphyrin IX methyl transferase
188	 33.61	0	172917..173645	-	242	123967724	-	A9601_01871	-	two-component response regulator
189	 30.89	0	173705..174850	+	381	123967725	-	A9601_01881	-	NifS-like aminotransferase class-V
190	 32.23	0	174865..175767	-	300	123967726	-	A9601_01891	-	S-adenosylmethionine-dependent methyltransferase
191	 36.53	+1	175806..176993	+	395	123967727	ndhH	A9601_01901	-	NAD(P)H-quinone oxidoreductase subunit H
192	 30.24	0	177003..177455	+	150	123967728	-	A9601_01911	-	thioesterase
193	 26.93	-1	177459..178661	-	400	123967729	menE	A9601_01921	-	putative O-succinylbenzoic acid--CoA ligase (OSB-CoA synthetase)
194	 28.47	0	178658..179623	-	321	123967730	menC	A9601_01931	-	putative O-succinylbenzoate synthase
195	 29.19	0	179620..180537	-	305	123967731	menA	A9601_01941	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
196	 28.10	0	180639..182051	+	470	123967732	menF	A9601_01951	-	isochorismate synthase
197	 32.79	0	182044..182967	-	307	123967733	gshB	A9601_01961	-	glutathione synthetase
198	 32.55	0	182973..183227	-	84	123967734	grxC	A9601_01971	-	glutaredoxin
199	 34.84	0	183362..184426	+	354	123967735	prfB	A9601_01981	-	peptide chain release factor 2
200	 29.51	0	184430..184612	+	60	123967736	-	A9601_01991	-	hypothetical protein
201	 24.07	-1	184619..185158	+	179	123967737	-	A9601_02001	-	metal-dependent hydrolase
202	 21.65	-2	185165..185575	+	136	123967738	dgkA	A9601_02011	-	diacylglycerol kinase
203	 31.49	0	185588..186184	+	198	123967739	pabA	A9601_02021	-	para-aminobenzoate synthase component II
31.48	MEAN

4.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.