IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1306	 23.02	-1	1088003..1088254	-	83	123968842	-	A9601_13091	-	hypothetical protein
1307	 22.53	-2	1088308..1088631	-	107	123968843	-	A9601_13101	-	cytochrome b(C-terminal)/b6/petD
1308	 28.40	0	1088732..1088893	+	53	123968844	-	A9601_13111	-	hypothetical protein
1309	 30.82	0	1088893..1089051	+	52	123968845	-	A9601_13121	-	hypothetical protein
1310	 33.06	0	1089060..1090151	-	363	123968846	-	A9601_13131	-	translation-associated GTPase
1311	 30.32	0	1090296..1091357	+	353	123968847	acrA	A9601_13141	-	membrane fusion protein
1312	 32.65	0	1091354..1094284	+	976	123968848	polA	A9601_13151	-	DNA polymerase I
1313	 31.63	0	1094309..1095778	+	489	123968849	cysS	A9601_13161	-	cysteinyl-tRNA synthetase
1314	 35.14	0	1095876..1097090	+	404	123968850	dxr	A9601_13171	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1315	 30.99	0	1097093..1097434	+	113	123968851	-	A9601_13181	-	ferredoxin
1316	 29.92	0	1097424..1098506	-	360	123968852	-	A9601_13191	-	putative hydrolase of the alpha/beta-hydrolase fold
1317	 37.78	+1	1098493..1099932	-	479	123968853	pntB	A9601_13201	-	putative nicotinamide nucleotide transhydrogenase, subunit beta
1318	 36.05	+1	1099941..1100234	-	97	123968854	pntA-2	A9601_13211	-	putative nicotinamide nucleotide transhydrogenase, subunit alpha 2 (A2)
1319	 36.96	+1	1100247..1101377	-	376	123968855	pntA	A9601_13221	-	putative nicotinamide nucleotide transhydrogenase, subunit alpha 1 (A1)
1320	 35.75	0	1101505..1102083	+	192	123968856	-	A9601_13231	-	EF-1 guanine nucleotide exchange domain-containing protein
1321	 29.33	0	1102238..1102462	+	74	123968857	-	A9601_13241	-	hypothetical protein
1322	 35.73	0	1102542..1103918	+	458	123968858	-	A9601_13251	-	putative thioredoxin reductase
1323	 33.71	0	1103928..1104194	-	88	123968859	infA	A9601_13261	-	translation initiation factor IF-1
1324	 25.82	-1	1104287..1104499	-	70	123968860	-	A9601_13271	-	hypothetical protein
1325	 33.13	0	1104554..1105516	-	320	123968861	-	A9601_13281	-	putative chaperon-like protein for quinone binding in photosystem II
1326	 34.34	0	1105574..1105672	-	32	123968862	petM	A9601_13291	-	cytochrome b6-f complex subunit PetM
1327	 30.25	0	1105767..1106708	+	313	123968863	-	A9601_13301	-	putative alpha/beta hydrolase superfamily protein
1328	 36.95	+1	1106712..1107236	+	174	123968864	ilvH	A9601_13311	-	acetolactate synthase 3 regulatory subunit
1329	 27.56	0	1107233..1107838	-	201	123968865	-	A9601_13321	-	cyclophilin-type peptidyl-prolyl cis-trans isomerase
1330	 31.36	0	1107886..1108443	-	185	123968866	-	A9601_13331	-	photosystem I assembly protein Ycf4
1331	 40.39	+2	1108626..1109702	+	358	123968867	psbD	A9601_13341	-	photosystem II PsbD protein (D2)
1332	 41.00	+2	1109686..1111068	+	460	123968868	psbC	A9601_13351	-	photosystem II PsbC protein (CP43)
1333	 28.92	0	1111129..1111740	-	203	123968869	maf	A9601_13361	-	Maf-like protein
1334	 31.45	0	1111849..1113336	+	495	123968870	cobQ	A9601_13371	-	cobyric acid synthase
1335	 34.52	0	1113333..1113584	+	83	123968871	-	A9601_13381	-	hypothetical protein
1336	 29.11	0	1113600..1115423	-	607	123968872	-	A9601_13391	-	hypothetical protein
1337	 27.25	0	1115974..1116993	+	339	123968873	-	A9601_13401	-	hypothetical protein
1338	 30.58	0	1116993..1117973	+	326	123968874	-	A9601_13411	-	hypothetical protein
1339	 31.26	0	1117970..1118692	+	240	123968875	-	A9601_13421	-	CMP-N-acetylneuraminic acid synthetase
1340	 29.57	0	1118699..1119496	+	265	123968876	-	A9601_13431	-	hypothetical protein
1341	 23.69	-1	1119490..1120080	+	196	123968877	-	A9601_13441	-	hypothetical protein
1342	 27.51	0	1120077..1121381	+	434	123968878	-	A9601_13451	-	hypothetical protein
1343	 27.47	0	1121388..1122035	+	215	123968879	-	A9601_13461	-	hypothetical protein
1344	 25.37	-1	1122055..1122657	-	200	123968880	-	A9601_13471	-	hypothetical protein
1345	 33.33	0	1122746..1122904	-	52	123968881	-	A9601_13481	-	hypothetical protein
1346	 35.09	0	1123239..1123409	+	56	123968882	-	A9601_13491	-	hypothetical protein
1347	 34.46	0	1123733..1124890	-	385	123968883	-	A9601_13501	-	hypothetical protein
1348	 29.61	0	1125543..1126187	+	214	123968884	-	A9601_13511	-	hypothetical protein
1349	 33.33	0	1126554..1127525	-	323	123968885	afuA	A9601_13521	-	ABC-type Fe3+ transport system periplasmic component
1350	 30.63	0	1127679..1128344	+	221	123968886	piuC	A9601_13531	-	putative hydroxylase
1351	 39.17	+1	1128416..1128655	+	79	123968887	-	A9601_13541	-	hypothetical protein
1352	 39.88	+1	1128732..1130030	-	432	123968888	-	A9601_13551	-	porin-like protein
1353	 36.43	+1	1130176..1130982	-	268	123968889	glyQ	A9601_13561	-	glycyl-tRNA synthetase subunit alpha
1354	 28.42	0	1131201..1131587	-	128	123968890	-	A9601_13571	-	hypothetical protein
1355	 30.63	0	1131608..1131940	-	110	123968891	-	A9601_13581	-	macrophage migration inhibitory factor family protein
1356	 28.74	0	1131943..1132116	-	57	123968892	-	A9601_13591	-	hypothetical protein
1357	 28.17	0	1132266..1132904	+	212	123968893	-	A9601_13601	-	hypothetical protein
1358	 31.71	0	1133016..1133261	+	81	123968894	-	A9601_13611	-	hypothetical protein
1359	 26.91	-1	1133268..1133921	-	217	123968895	-	A9601_13621	-	hypothetical protein
1360	 37.39	+1	1133998..1135056	-	352	123968896	-	A9601_13631	-	chlorophyll a/b binding light harvesting protein PcbD
1361	 38.86	+1	1135200..1135724	-	174	123968897	isiB	A9601_13641	-	flavodoxin FldA
1362	 26.75	-1	1135864..1136592	+	242	123968898	-	A9601_13651	-	hypothetical protein
1363	 27.13	0	1136607..1136864	+	85	123968899	-	A9601_13661	-	hypothetical protein
1364	 33.33	0	1136950..1137174	+	74	123968900	-	A9601_13671	-	hypothetical protein
1365	 28.12	0	1137380..1138165	+	261	123968901	-	A9601_13681	-	AEC family transporter
1366	 32.94	0	1138263..1138514	+	83	123968902	-	A9601_13691	-	CopG family protein
1367	 32.50	0	1138511..1140316	-	601	123968903	-	A9601_13701	-	4-amino-4-deoxy-L-arabinose transferase
1368	 34.73	0	1140323..1141399	-	358	123968904	-	A9601_13711	-	glycosyl transferases group 1
1369	 35.24	0	1141428..1142369	-	313	123968905	-	A9601_13721	-	SMR family transporter
1370	 34.57	0	1142422..1143231	+	269	123968906	sppA	A9601_13731	-	signal peptide peptidase SppA (protease IV)
1371	 32.03	0	1143238..1143621	+	127	123968907	aroH	A9601_13741	-	chorismate mutase
1372	 28.32	0	1143692..1144270	+	192	123968908	-	A9601_13751	-	hypothetical protein
1373	 33.33	0	1144301..1144438	+	45	123968909	rpmH	A9601_13761	-	50S ribosomal protein L34
1374	 29.20	0	1144451..1144837	+	128	123968910	rnpA	A9601_13771	-	ribonuclease P protein component
1375	 32.61	0	1144834..1145247	+	137	123968911	-	A9601_13781	-	hypothetical protein
1376	 36.57	+1	1145320..1146462	+	380	123968912	yidC	A9601_13791	-	putative inner membrane protein translocase component YidC
1377	 34.76	0	1146479..1147945	+	488	123968913	-	A9601_13801	-	AAA family ATPase
1378	 32.24	0	1148068..1149345	+	425	123968914	serS	A9601_13811	-	seryl-tRNA synthetase
1379	 33.15	0	1149355..1150434	+	359	123968915	-	A9601_13821	-	membrane-associated Zn-dependent proteases 1
1380	 36.96	+1	1150499..1150801	+	100	123968916	rpsN	A9601_13831	-	30S ribosomal protein S14
1381	 38.83	+1	1150972..1153137	+	721	123968917	-	A9601_13841	-	polynucleotide phosphorylase/polyadenylase
1382	 31.12	0	1153140..1154042	-	300	123968918	cysQ	A9601_13851	-	CysQ
1383	 31.13	0	1154046..1154906	+	286	123968919	-	A9601_13861	-	putative tetrapyrrole methylase family protein
1384	 21.46	-2	1154931..1155149	+	72	123968920	-	A9601_13871	-	hypothetical protein
1385	 26.96	-1	1155157..1155894	-	245	123968921	-	A9601_13881	-	hypothetical protein
1386	 28.06	0	1156152..1157402	+	416	123968922	-	A9601_13891	-	hypothetical protein
1387	 32.56	0	1157399..1158823	-	474	123968923	ugd	A9601_13901	-	UDP-glucose 6-dehydrogenase
1388	 24.93	-1	1158929..1159690	-	253	123968924	-	A9601_13911	-	hypothetical protein
1389	 23.49	-1	1160134..1161261	-	375	123968925	-	A9601_13921	-	putative glycosyl transferase, group 1
1390	 25.57	-1	1161289..1162254	-	321	123968926	-	A9601_13931	-	glycosyl transferase
1391	 26.37	-1	1162265..1163356	-	363	123968927	-	A9601_13941	-	glycosyl transferase, group 1
1392	 26.65	-1	1163508..1164449	+	313	123968928	-	A9601_13951	-	putative glycosyl transferase
1393	 27.95	0	1164536..1165594	+	352	123968929	-	A9601_13961	-	hypothetical protein
1394	 27.89	0	1165644..1166672	-	342	123968930	-	A9601_13971	-	putative nucleotide sugar epimerase
1395	 31.12	0	1166741..1168183	+	480	123968931	manC	A9601_13981	-	mannose-1-phosphate guanylyltransferase
1396	 32.46	0	1168547..1169689	+	380	123968932	gmd	A9601_13991	-	gdpmannose 4,6-dehydratase
1397	 27.76	0	1169702..1170670	+	322	123968933	-	A9601_14001	-	putative fucose synthetase
1398	 25.51	-1	1170788..1172512	+	574	123968934	gumC	A9601_14011	-	hypothetical protein
1399	 24.38	-1	1172558..1173439	-	293	123968935	-	A9601_14021	-	hypothetical protein
1400	 25.90	-1	1173444..1174250	-	268	123968936	-	A9601_14031	-	hypothetical protein
1401	 22.43	-2	1174329..1175612	-	427	123968937	-	A9601_14041	-	hypothetical protein
1402	 31.68	0	1176105..1177313	-	402	123968938	-	A9601_14051	-	hypothetical protein
1403	 31.47	0	1177310..1177846	-	178	123968939	rfbC	A9601_14061	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1404	 33.72	0	1177969..1178742	-	257	123968940	-	A9601_14071	-	glucose-1-phosphate cytidylyltransferase
1405	 27.75	0	1178879..1180096	-	405	123968941	-	A9601_14081	-	hypothetical protein
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.