IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1263	 25.00	-1	1069985..1070164	-	59	123968799	-	A9601_12661	-	chorismate binding enzyme
1264	 40.06	+1	1070214..1070525	-	103	123968800	-	A9601_12671	-	hypothetical protein
1265	 30.68	0	1070820..1071083	+	87	123968801	-	A9601_12681	-	hypothetical protein
1266	 28.86	0	1071120..1071320	+	66	123968802	-	A9601_12691	-	hypothetical protein
1267	 34.19	0	1071350..1071466	+	38	123968803	-	A9601_12701	-	hypothetical protein
1268	 26.67	-1	1071764..1071868	-	34	123968804	-	A9601_12711	-	hypothetical protein
1269	 26.39	-1	1072014..1072157	+	47	123968805	-	A9601_12721	-	hypothetical protein
1270	 26.50	-1	1072157..1072273	+	38	123968806	-	A9601_12731	-	hypothetical protein
1271	 28.57	0	1072270..1072500	+	76	123968807	-	A9601_12741	-	hypothetical protein
1272	 27.81	0	1072503..1072955	+	150	123968808	-	A9601_12751	-	hypothetical protein
1273	 30.64	0	1073017..1073535	+	172	123968809	-	A9601_12761	-	metal-binding protein
1274	 33.33	0	1073641..1073778	+	45	123968810	-	A9601_12771	-	hypothetical protein
1275	 27.59	0	1073779..1074039	+	86	123968811	-	A9601_12781	-	fumarate reductase subunit D
1276	 33.84	0	1074068..1074265	-	65	123968812	-	A9601_12791	-	hypothetical protein
1277	 25.23	-1	1074372..1074593	-	73	123968813	-	A9601_12801	-	hypothetical protein
1278	 27.15	0	1074673..1074963	-	96	123968814	-	A9601_12811	-	hypothetical protein
1279	 32.75	0	1075156..1075326	-	56	123968815	-	A9601_12821	-	hypothetical protein
1280	 23.55	-1	1075516..1075791	-	91	123968816	-	A9601_12831	-	hypothetical protein
1281	 27.27	0	1076017..1076148	+	43	123968817	-	A9601_12841	-	hypothetical protein
1282	 27.41	0	1076158..1076292	-	44	123968818	-	A9601_12851	-	hypothetical protein
1283	 30.04	0	1076470..1076712	-	80	123968819	-	A9601_12861	-	hypothetical protein
1284	 19.48	-2	1076688..1076918	-	76	123968820	-	A9601_12871	-	hypothetical protein
1285	 29.29	0	1076998..1077195	+	65	123968821	-	A9601_12881	-	hypothetical protein
1286	 34.02	0	1077419..1078723	-	434	123968822	mntH	A9601_12891	-	hypothetical protein
1287	 22.22	-2	1078740..1078856	-	38	123968823	-	A9601_12901	-	hypothetical protein
1288	 21.37	-2	1078884..1079000	-	38	123968824	-	A9601_12911	-	hypothetical protein
1289	 25.87	-1	1079086..1079460	-	124	123968825	-	A9601_12921	-	hypothetical protein
1290	 31.33	0	1079523..1079822	-	99	123968826	-	A9601_12931	-	hypothetical protein
1291	 30.50	0	1079838..1080119	-	93	123968827	-	A9601_12941	-	hypothetical protein
1292	 35.57	0	1080254..1081597	+	447	123968828	-	A9601_12951	-	hypothetical protein
1293	 36.09	+1	1082001..1083704	+	567	123968829	-	A9601_12961	-	hypothetical protein
1294	 35.70	0	1083749..1084171	-	140	123968830	-	A9601_12971	-	hypothetical protein
1295	 25.93	-1	1084225..1084386	-	53	123968831	-	A9601_12981	-	hypothetical protein
1296	 30.05	0	1084460..1084642	-	60	123968832	-	A9601_12991	-	hypothetical protein
1297	 39.63	+1	1084792..1085061	+	89	123968833	-	A9601_13001	-	phosphatidylinositol-specific phospho
1298	 33.00	0	1085182..1085478	+	98	123968834	-	A9601_13011	-	heat-labile enterotoxin alpha chain
1299	 31.71	0	1085475..1086212	+	245	123968835	-	A9601_13021	-	hypothetical protein
1300	 37.04	+1	1086278..1086385	-	35	123968836	-	A9601_13031	-	high light inducible protein
1301	 41.55	+2	1086707..1086913	+	68	123968837	-	A9601_13041	-	high light inducible protein
1302	 34.10	0	1086913..1087173	+	86	123968838	-	A9601_13051	-	high light inducible protein
1303	 34.11	0	1087208..1087336	+	42	123968839	-	A9601_13061	-	high light inducible protein
1304	 30.56	0	1087338..1087517	+	59	123968840	-	A9601_13071	-	hypothetical protein
1305	 25.00	-1	1087729..1087944	-	71	123968841	-	A9601_13081	-	hypothetical protein
1306	 23.02	-1	1088003..1088254	-	83	123968842	-	A9601_13091	-	hypothetical protein
1307	 22.53	-2	1088308..1088631	-	107	123968843	-	A9601_13101	-	cytochrome b(C-terminal)/b6/petD
1308	 28.40	0	1088732..1088893	+	53	123968844	-	A9601_13111	-	hypothetical protein
1309	 30.82	0	1088893..1089051	+	52	123968845	-	A9601_13121	-	hypothetical protein
1310	 33.06	0	1089060..1090151	-	363	123968846	-	A9601_13131	-	translation-associated GTPase
1311	 30.32	0	1090296..1091357	+	353	123968847	acrA	A9601_13141	-	membrane fusion protein
1312	 32.65	0	1091354..1094284	+	976	123968848	polA	A9601_13151	-	DNA polymerase I
1313	 31.63	0	1094309..1095778	+	489	123968849	cysS	A9601_13161	-	cysteinyl-tRNA synthetase
1314	 35.14	0	1095876..1097090	+	404	123968850	dxr	A9601_13171	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1315	 30.99	0	1097093..1097434	+	113	123968851	-	A9601_13181	-	ferredoxin
1316	 29.92	0	1097424..1098506	-	360	123968852	-	A9601_13191	-	putative hydrolase of the alpha/beta-hydrolase fold
1317	 37.78	+1	1098493..1099932	-	479	123968853	pntB	A9601_13201	-	putative nicotinamide nucleotide transhydrogenase, subunit beta
1318	 36.05	+1	1099941..1100234	-	97	123968854	pntA-2	A9601_13211	-	putative nicotinamide nucleotide transhydrogenase, subunit alpha 2 (A2)
1319	 36.96	+1	1100247..1101377	-	376	123968855	pntA	A9601_13221	-	putative nicotinamide nucleotide transhydrogenase, subunit alpha 1 (A1)
1320	 35.75	0	1101505..1102083	+	192	123968856	-	A9601_13231	-	EF-1 guanine nucleotide exchange domain-containing protein
1321	 29.33	0	1102238..1102462	+	74	123968857	-	A9601_13241	-	hypothetical protein
1322	 35.73	0	1102542..1103918	+	458	123968858	-	A9601_13251	-	putative thioredoxin reductase
1323	 33.71	0	1103928..1104194	-	88	123968859	infA	A9601_13261	-	translation initiation factor IF-1
1324	 25.82	-1	1104287..1104499	-	70	123968860	-	A9601_13271	-	hypothetical protein
1325	 33.13	0	1104554..1105516	-	320	123968861	-	A9601_13281	-	putative chaperon-like protein for quinone binding in photosystem II
1326	 34.34	0	1105574..1105672	-	32	123968862	petM	A9601_13291	-	cytochrome b6-f complex subunit PetM
1327	 30.25	0	1105767..1106708	+	313	123968863	-	A9601_13301	-	putative alpha/beta hydrolase superfamily protein
1328	 36.95	+1	1106712..1107236	+	174	123968864	ilvH	A9601_13311	-	acetolactate synthase 3 regulatory subunit
1329	 27.56	0	1107233..1107838	-	201	123968865	-	A9601_13321	-	cyclophilin-type peptidyl-prolyl cis-trans isomerase
1330	 31.36	0	1107886..1108443	-	185	123968866	-	A9601_13331	-	photosystem I assembly protein Ycf4
1331	 40.39	+2	1108626..1109702	+	358	123968867	psbD	A9601_13341	-	photosystem II PsbD protein (D2)
1332	 41.00	+2	1109686..1111068	+	460	123968868	psbC	A9601_13351	-	photosystem II PsbC protein (CP43)
1333	 28.92	0	1111129..1111740	-	203	123968869	maf	A9601_13361	-	Maf-like protein
1334	 31.45	0	1111849..1113336	+	495	123968870	cobQ	A9601_13371	-	cobyric acid synthase
1335	 34.52	0	1113333..1113584	+	83	123968871	-	A9601_13381	-	hypothetical protein
1336	 29.11	0	1113600..1115423	-	607	123968872	-	A9601_13391	-	hypothetical protein
1337	 27.25	0	1115974..1116993	+	339	123968873	-	A9601_13401	-	hypothetical protein
1338	 30.58	0	1116993..1117973	+	326	123968874	-	A9601_13411	-	hypothetical protein
1339	 31.26	0	1117970..1118692	+	240	123968875	-	A9601_13421	-	CMP-N-acetylneuraminic acid synthetase
1340	 29.57	0	1118699..1119496	+	265	123968876	-	A9601_13431	-	hypothetical protein
1341	 23.69	-1	1119490..1120080	+	196	123968877	-	A9601_13441	-	hypothetical protein
1342	 27.51	0	1120077..1121381	+	434	123968878	-	A9601_13451	-	hypothetical protein
1343	 27.47	0	1121388..1122035	+	215	123968879	-	A9601_13461	-	hypothetical protein
1344	 25.37	-1	1122055..1122657	-	200	123968880	-	A9601_13471	-	hypothetical protein
1345	 33.33	0	1122746..1122904	-	52	123968881	-	A9601_13481	-	hypothetical protein
1346	 35.09	0	1123239..1123409	+	56	123968882	-	A9601_13491	-	hypothetical protein
1347	 34.46	0	1123733..1124890	-	385	123968883	-	A9601_13501	-	hypothetical protein
1348	 29.61	0	1125543..1126187	+	214	123968884	-	A9601_13511	-	hypothetical protein
1349	 33.33	0	1126554..1127525	-	323	123968885	afuA	A9601_13521	-	ABC-type Fe3+ transport system periplasmic component
1350	 30.63	0	1127679..1128344	+	221	123968886	piuC	A9601_13531	-	putative hydroxylase
1351	 39.17	+1	1128416..1128655	+	79	123968887	-	A9601_13541	-	hypothetical protein
1352	 39.88	+1	1128732..1130030	-	432	123968888	-	A9601_13551	-	porin-like protein
1353	 36.43	+1	1130176..1130982	-	268	123968889	glyQ	A9601_13561	-	glycyl-tRNA synthetase subunit alpha
1354	 28.42	0	1131201..1131587	-	128	123968890	-	A9601_13571	-	hypothetical protein
1355	 30.63	0	1131608..1131940	-	110	123968891	-	A9601_13581	-	macrophage migration inhibitory factor family protein
1356	 28.74	0	1131943..1132116	-	57	123968892	-	A9601_13591	-	hypothetical protein
1357	 28.17	0	1132266..1132904	+	212	123968893	-	A9601_13601	-	hypothetical protein
1358	 31.71	0	1133016..1133261	+	81	123968894	-	A9601_13611	-	hypothetical protein
1359	 26.91	-1	1133268..1133921	-	217	123968895	-	A9601_13621	-	hypothetical protein
1360	 37.39	+1	1133998..1135056	-	352	123968896	-	A9601_13631	-	chlorophyll a/b binding light harvesting protein PcbD
1361	 38.86	+1	1135200..1135724	-	174	123968897	isiB	A9601_13641	-	flavodoxin FldA
1362	 26.75	-1	1135864..1136592	+	242	123968898	-	A9601_13651	-	hypothetical protein
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.