IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1049	 29.82	0	913435..914430	+	331	123968585	-	A9601_10521	-	putative multidrug efflux ABC transporter
1050	 29.94	0	914420..915214	+	264	123968586	-	A9601_10531	-	putative multidrug efflux ABC transporter
1051	 25.16	-1	915211..916005	+	264	123968587	-	A9601_10541	-	membrane protein, multidrug efflux associated
1052	 24.72	-1	916009..916275	-	88	123968588	-	A9601_10551	-	hypothetical protein
1053	 29.82	0	916275..916502	-	75	123968589	-	A9601_10561	-	hypothetical protein
1054	 27.18	0	916973..917785	-	270	123968590	-	A9601_10571	-	permease
1055	 35.09	0	917924..918265	+	113	123968591	-	A9601_10581	-	HNH endonuclease:HNH nuclease
1056	 22.56	-2	918359..918553	-	64	123968592	-	A9601_10591	-	hypothetical protein
1057	 28.61	0	918563..918964	-	133	123968593	-	A9601_10601	-	ATP synthase protein 8
1058	 33.33	0	919129..919350	+	73	123968594	-	A9601_10611	-	hypothetical protein
1059	 23.81	-1	919486..919611	+	41	123968595	-	A9601_10621	-	hypothetical protein
1060	 16.67	-2	919598..919711	-	37	123968596	-	A9601_10631	-	hypothetical protein
1061	 28.97	0	919835..920338	+	167	123968597	-	A9601_10641	-	josephin
1062	 24.44	-1	920329..920598	+	89	123968598	-	A9601_10651	-	hypothetical protein
1063	 29.04	0	920600..920995	+	131	123968599	-	A9601_10661	-	putative purine phosphoribosyltransferase-related protein
1064	 28.32	0	920992..921450	+	152	123968600	-	A9601_10671	-	hypothetical protein
1065	 33.33	0	921536..921712	+	58	123968601	rpsU	A9601_10681	-	30S ribosomal protein S21
1066	 31.13	0	921785..922102	-	105	123968602	-	A9601_10691	-	helix-hairpin-helix DNA-binding motif-containing protein
1067	 23.79	-1	922369..922965	+	198	123968603	-	A9601_10701	-	ATP/GTP-binding motif-containing protein
1068	 24.59	-1	922954..924120	-	388	123968604	-	A9601_10711	-	hypothetical protein
1069	 22.39	-2	924141..924944	-	267	123968605	-	A9601_10721	-	amphipathic helix repeat-containing protein
1070	 28.63	0	924977..925210	-	77	123968606	-	A9601_10731	-	hypothetical protein
1071	 34.07	0	925380..925784	+	134	123968607	-	A9601_10741	-	hypothetical protein
1072	 31.28	0	925808..926488	-	226	123968608	-	A9601_10751	-	peptidase E
1073	 26.96	-1	926509..926979	+	156	123968609	-	A9601_10761	-	GCN5-related N-acetyltransferase
1074	 28.09	0	926986..927309	+	107	123968610	-	A9601_10771	-	hypothetical protein
1075	 20.00	-2	927409..927573	+	54	123968611	-	A9601_10781	-	hypothetical protein
1076	 33.96	0	927666..927983	+	105	123968612	-	A9601_10791	-	hypothetical protein
1077	 21.67	-2	928007..928186	+	59	123968613	-	A9601_10801	-	hypothetical protein
1078	 41.88	+2	928255..928371	+	38	123968614	-	A9601_10811	-	hypothetical protein
1079	 28.15	0	928404..928673	-	89	123968615	-	A9601_10821	-	hypothetical protein
1080	 25.76	-1	928525..928656	+	43	123968616	-	A9601_10831	-	hypothetical protein
1081	 34.78	0	928783..928989	-	68	123968617	-	A9601_10841	-	hypothetical protein
1082	 31.23	0	929122..929502	+	126	123968618	-	A9601_10851	-	hypothetical protein
1083	 30.65	0	929610..929795	+	61	123968619	-	A9601_10861	-	hypothetical protein
1084	 25.74	-1	929839..930141	+	100	123968620	-	A9601_10871	-	hypothetical protein
1085	 30.26	0	930208..930924	+	238	123968621	-	A9601_10881	-	hypothetical protein
1086	 30.14	0	931080..931361	+	93	123968622	-	A9601_10891	-	hypothetical protein
1087	 28.27	0	931412..934018	+	868	123968623	pepN	A9601_10901	-	aminopeptidase N
1088	 32.10	0	934423..934584	+	53	123968624	-	A9601_10911	-	photosystem II reaction centre N protein
1089	 27.86	0	934600..934800	-	66	123968625	-	A9601_10921	-	hypothetical protein
1090	 30.95	0	934894..936069	-	391	123968626	purT	A9601_10931	-	phosphoribosylglycinamide formyltransferase 2
1091	 30.04	0	936079..936321	-	80	123968627	-	A9601_10941	-	lectin subunit alpha
1092	 34.58	0	936467..936946	+	159	123968628	btuE	A9601_10951	-	glutathione peroxidase
1093	 29.38	0	937080..937559	-	159	123968629	-	A9601_10961	-	hypothetical protein
1094	 26.46	-1	937607..937999	-	130	123968630	-	A9601_10971	-	hypothetical protein
1095	 32.94	0	938171..939178	+	335	123968631	-	A9601_10981	-	nitrogen regulation protein NifR3 family-like protein
1096	 23.26	-1	939197..939454	+	85	123968632	-	A9601_10991	-	hypothetical protein
1097	 30.91	0	939473..939637	-	54	123968633	-	A9601_11001	-	hypothetical protein
1098	 24.05	-1	939680..939916	-	78	123968634	-	A9601_11011	-	hypothetical protein
1099	 24.89	-1	940012..940248	-	78	123968635	-	A9601_11021	-	hypothetical protein
1100	 28.33	0	940355..940774	+	139	123968636	-	A9601_11031	-	4-hydroxybenzoyl-CoA thioesterase family protein
1101	 25.25	-1	940809..941006	+	65	123968637	-	A9601_11041	-	hypothetical protein
1102	 28.97	0	941047..941298	+	83	123968638	-	A9601_11051	-	hypothetical protein
1103	 27.93	0	941319..942188	+	289	123968639	-	A9601_11061	-	hypothetical protein
1104	 34.07	0	942194..942598	-	134	123968640	-	A9601_11071	-	hypothetical protein
1105	 24.60	-1	942716..942841	+	41	123968641	-	A9601_11081	-	hypothetical protein
1106	 22.11	-2	942973..943266	+	97	123968642	-	A9601_11091	-	virion host shutoff protein
1107	 27.44	0	943276..943818	-	180	123968643	-	A9601_11101	-	hypothetical protein
1108	 31.23	0	943898..944182	+	94	123968644	-	A9601_11111	-	hypothetical protein
1109	 26.11	-1	944320..944499	+	59	123968645	-	A9601_11121	-	hypothetical protein
1110	 30.00	0	944504..944683	-	59	123968646	-	A9601_11131	-	hypothetical protein
1111	 33.33	0	944772..944903	-	43	123968647	-	A9601_11141	-	hypothetical protein
1112	 27.06	0	944990..945292	-	100	123968648	-	A9601_11151	-	integrin alpha cytoplasmic region
1113	 33.78	0	945293..945514	-	73	123968649	-	A9601_11161	-	hypothetical protein
1114	 26.11	-1	945564..945743	-	59	123968650	-	A9601_11171	-	hypothetical protein
1115	 27.87	0	945992..946174	+	60	123968651	-	A9601_11181	-	hypothetical protein
1116	 28.66	0	946260..947030	+	256	123968652	-	A9601_11191	-	pili assembly chaperone
1117	 32.70	0	947162..947476	+	104	123968653	-	A9601_11201	-	hypothetical protein
1118	 25.93	-1	947495..947656	-	53	123968654	-	A9601_11211	-	hypothetical protein
1119	 28.80	0	947754..948128	-	124	123968655	-	A9601_11221	-	hypothetical protein
1120	 25.12	-1	948308..948514	+	68	123968656	-	A9601_11231	-	hypothetical protein
1121	 20.16	-2	948796..949038	+	80	123968657	-	A9601_11241	-	lactate/malate dehydrogenase, alpha/beta
1122	 30.00	0	949165..949584	+	139	123968658	-	A9601_11251	-	putative stress-induced protein OsmC
1123	 32.03	0	950205..950588	-	127	123968659	-	A9601_11261	-	hypothetical protein
1124	 25.99	-1	951038..951214	+	58	123968660	-	A9601_11271	-	hypothetical protein
1125	 20.14	-2	951291..951434	+	47	123968661	-	A9601_11281	-	hypothetical protein
1126	 37.75	+1	951444..951692	+	82	123968662	-	A9601_11291	-	hypothetical protein
1127	 25.60	-1	951755..951922	+	55	123968663	-	A9601_11301	-	hypothetical protein
1128	 34.61	0	951923..952708	-	261	123968664	-	A9601_11311	-	ABC transporter
1129	 37.47	+1	952726..953160	+	144	123968665	-	A9601_11321	-	ferric uptake regulator family protein
1130	 35.93	+1	953175..953945	-	256	123968666	-	A9601_11331	-	ABC  transporter ATP-binding protein
1131	 37.20	+1	954075..955238	+	387	123968667	-	A9601_11341	-	ABC transporter substrate-binding protein
1132	 37.56	+1	955323..956672	+	449	123968668	-	A9601_11351	-	cobalamin synthesis protein/P47K
1133	 39.85	+1	956660..957733	+	357	123968669	-	A9601_11361	-	WD-40 repeat-containing G-protein
1134	 33.33	0	958181..958279	-	32	123968670	-	A9601_11371	-	hypothetical protein
1135	 25.72	-1	958467..958742	+	91	123968671	-	A9601_11381	-	hypothetical protein
1136	 21.62	-2	958767..958988	-	73	123968672	-	A9601_11391	-	hypothetical protein
1137	 37.97	+1	959033..959269	-	78	123968673	-	A9601_11401	-	hypothetical protein
1138	 31.31	0	959180..959278	+	32	123968674	-	A9601_11411	-	hypothetical protein
1139	 32.64	0	959398..960840	+	480	123968675	-	A9601_11421	-	hypothetical protein
1140	 33.97	0	960842..961783	+	313	123968676	-	A9601_11431	-	hypothetical protein
1141	 34.62	0	961795..962652	+	285	123968677	-	A9601_11441	-	transglutaminase-like superfamily protein
1142	 30.59	0	962827..963300	+	157	123968678	-	A9601_11451	-	hypothetical protein
1143	 35.45	0	963384..963902	+	172	123968679	-	A9601_11461	-	hypothetical protein
1144	 22.32	-2	963912..964265	-	117	123968680	-	A9601_11471	-	lipoprotein
1145	 18.28	-2	964265..964450	-	61	123968681	-	A9601_11481	-	hypothetical protein
1146	 32.41	0	964467..965336	-	289	123968682	-	A9601_11491	-	putative pfkB family carbohydrate kinase
1147	 30.11	0	965378..965749	+	123	123968683	-	A9601_11501	-	hypothetical protein
1148	 30.00	0	965746..966975	-	409	123968684	-	A9601_11511	-	major facilitator superfamily multidrug-efflux transporter
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.