IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus str. AS9601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 4.43
Prochlorococcus marinus str. AS9601, complete genome - 1..1669886
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
988	 30.35	0	862219..864663	-	814	123968524	pheT	A9601_09911	-	phenylalanyl-tRNA synthetase beta chain
989	 33.33	0	864764..864958	+	64	161353815	rpmG	A9601_09921	-	50S ribosomal protein L33
990	 34.68	0	864976..865197	+	73	123968526	rpsR	A9601_09931	-	30S ribosomal protein S18
991	 22.70	-1	865243..866427	+	394	123968527	-	A9601_09941	-	ribonuclease II
992	 30.23	0	866496..868040	+	514	123968528	metG	A9601_09951	-	methionyl-tRNA synthetase
993	 22.85	-1	868066..868647	+	193	123968529	-	A9601_09961	-	SMC domain-containing protein
994	 30.94	0	868644..869270	-	208	123968530	-	A9601_09971	-	hypothetical protein
995	 31.73	0	869382..869693	+	103	123968531	-	A9601_09981	-	fusion glycoprotein F0
996	 30.12	0	869704..870264	+	186	123968532	cobU	A9601_09991	-	putative cobinamide kinase
997	 29.61	0	870267..870749	+	160	123968533	cspR	A9601_10001	-	SpoU family tRNA/rRNA methyltransferase
998	 36.81	+1	870920..871207	+	95	123968534	clpS	A9601_10011	-	ATP-dependent Clp protease adaptor
999	 32.14	0	871219..871470	+	83	123968535	-	A9601_10021	-	hypothetical protein
1000	 29.41	0	871824..871976	+	50	123968536	-	A9601_10031	-	hypothetical protein
1001	 32.31	0	872000..872389	-	129	123968537	-	A9601_10041	-	hypothetical protein
1002	 27.45	0	872386..872538	-	50	123968538	-	A9601_10051	-	hypothetical protein
1003	 28.69	0	872807..873172	-	121	123968539	-	A9601_10061	-	hypothetical protein
1004	 24.18	-1	873249..873401	+	50	123968540	-	A9601_10071	-	hypothetical protein
1005	 25.56	-1	873398..873577	-	59	123968541	-	A9601_10081	-	hypothetical protein
1006	 19.77	-2	874021..874197	-	58	123968542	-	A9601_10091	-	hypothetical protein
1007	 30.41	0	874383..874553	+	56	123968543	-	A9601_10101	-	hypothetical protein
1008	 28.83	0	874623..874844	+	73	123968544	-	A9601_10111	-	RNA-dependent RNA polymerase-like protein
1009	 25.79	-1	874849..875007	-	52	123968545	-	A9601_10121	-	hypothetical protein
1010	 39.32	+1	875313..875897	+	194	123968546	ahpC	A9601_10131	-	thioredoxin peroxidase
1011	 22.18	-2	875913..876665	-	250	123968547	-	A9601_10141	-	hypothetical protein
1012	 32.48	0	876698..878452	-	584	123968548	-	A9601_10151	-	cell division protein FtsH4
1013	 35.09	0	878584..878754	+	56	123968549	rpmF	A9601_10161	-	50S ribosomal protein L32
1014	 24.46	-1	878758..879084	-	108	123968550	-	A9601_10171	-	hypothetical protein
1015	 29.13	0	879071..879832	-	253	123968551	-	A9601_10181	-	putative CbbY-like protein
1016	 32.47	0	880008..880355	+	115	123968552	-	A9601_10191	-	Fe-S-cluster oxidoreductase
1017	 27.22	0	880352..880678	+	108	123968553	-	A9601_10201	-	hypothetical protein
1018	 32.37	0	880679..880990	+	103	123968554	-	A9601_10211	-	hypothetical protein
1019	 26.68	-1	881063..883285	+	740	123968555	vacB	A9601_10221	-	putative acetazolamide conferring resistance protein Zam
1020	 25.23	-1	883353..883796	+	147	123968556	-	A9601_10231	-	hypothetical protein
1021	 27.66	0	883856..884419	+	187	123968557	-	A9601_10241	-	hypothetical protein
1022	 31.97	0	884499..885671	+	390	123968558	pniL34	A9601_10251	-	magnesium-protoporphyrin IX monomethyl ester cyclase
1023	 35.72	0	885703..887127	+	474	123968559	tldD	A9601_10261	-	putative modulator of DNA gyrase; TldD
1024	 32.59	0	887131..888483	+	450	123968560	pmbA	A9601_10271	-	putative modulator of DNA gyrase
1025	 30.90	0	888480..889466	+	328	123968561	fmt	A9601_10281	-	putative methionyl-tRNA formyltransferase
1026	 28.76	0	889475..890173	-	232	123968562	terC	A9601_10291	-	membrane protein TerC
1027	 28.21	0	890248..893760	+	1170	123968563	mfd	A9601_10301	-	transcriptional-repair coupling factor
1028	 33.95	0	893833..893994	+	53	123968564	-	A9601_10311	-	hypothetical protein
1029	 19.78	-2	893997..894365	-	122	123968565	-	A9601_10321	-	nucleoside diphosphate kinase
1030	 24.87	-1	894454..895044	-	196	123968566	-	A9601_10331	-	hypothetical protein
1031	 21.78	-2	895046..895426	-	126	123968567	-	A9601_10341	-	hypothetical protein
1032	 20.71	-2	895610..895807	-	65	123968568	-	A9601_10351	-	hypothetical protein
1033	 25.63	-1	895813..896967	-	384	123968569	ubiH	A9601_10361	-	2-octaprenyl-6-methoxyphenol 4-monoxygenase UbiH
1034	 31.15	0	896987..897628	-	213	123968570	-	A9601_10371	-	hypothetical protein
1035	 34.28	0	897630..898478	-	282	123968571	dapB	A9601_10381	-	dihydrodipicolinate reductase
1036	 35.68	0	898581..902591	+	1336	123968572	chlH	A9601_10391	-	magnesium chelatase
1037	 30.66	0	902600..903385	-	261	123968573	folP	A9601_10401	-	putative dihydropteroate synthase
1038	 32.78	0	903429..904154	-	241	123968574	tpiA	A9601_10411	-	triosephosphate isomerase
1039	 24.86	-1	904207..904383	-	58	123968575	-	A9601_10421	-	S4 domain-containing protein
1040	 30.60	0	904502..906145	+	547	123968576	-	A9601_10431	-	ABC transporter
1041	 26.48	-1	906179..906397	+	72	123968577	-	A9601_10441	-	hypothetical protein
1042	 33.67	0	906401..909697	-	1098	123968578	carB	A9601_10451	-	carbamoyl-phosphate synthase, large subunit
1043	 37.09	+1	909805..910443	+	212	123968579	-	A9601_10461	-	hypothetical protein
1044	 33.33	0	910433..910777	+	114	123968580	-	A9601_10471	-	domain of unknown function DUF143:Iojap-related protein
1045	 26.49	-1	910728..911282	+	184	123968581	-	A9601_10481	-	hypothetical protein
1046	 33.85	0	911283..912248	+	321	123968582	ansA	A9601_10491	-	L-asparaginase II
1047	 28.47	0	912749..912892	+	47	123968583	-	A9601_10501	-	hypothetical protein
1048	 26.67	-1	912968..913357	+	129	123968584	-	A9601_10511	-	hypothetical protein
1049	 29.82	0	913435..914430	+	331	123968585	-	A9601_10521	-	putative multidrug efflux ABC transporter
1050	 29.94	0	914420..915214	+	264	123968586	-	A9601_10531	-	putative multidrug efflux ABC transporter
1051	 25.16	-1	915211..916005	+	264	123968587	-	A9601_10541	-	membrane protein, multidrug efflux associated
1052	 24.72	-1	916009..916275	-	88	123968588	-	A9601_10551	-	hypothetical protein
1053	 29.82	0	916275..916502	-	75	123968589	-	A9601_10561	-	hypothetical protein
1054	 27.18	0	916973..917785	-	270	123968590	-	A9601_10571	-	permease
1055	 35.09	0	917924..918265	+	113	123968591	-	A9601_10581	-	HNH endonuclease:HNH nuclease
1056	 22.56	-2	918359..918553	-	64	123968592	-	A9601_10591	-	hypothetical protein
1057	 28.61	0	918563..918964	-	133	123968593	-	A9601_10601	-	ATP synthase protein 8
1058	 33.33	0	919129..919350	+	73	123968594	-	A9601_10611	-	hypothetical protein
1059	 23.81	-1	919486..919611	+	41	123968595	-	A9601_10621	-	hypothetical protein
1060	 16.67	-2	919598..919711	-	37	123968596	-	A9601_10631	-	hypothetical protein
1061	 28.97	0	919835..920338	+	167	123968597	-	A9601_10641	-	josephin
1062	 24.44	-1	920329..920598	+	89	123968598	-	A9601_10651	-	hypothetical protein
1063	 29.04	0	920600..920995	+	131	123968599	-	A9601_10661	-	putative purine phosphoribosyltransferase-related protein
1064	 28.32	0	920992..921450	+	152	123968600	-	A9601_10671	-	hypothetical protein
1065	 33.33	0	921536..921712	+	58	123968601	rpsU	A9601_10681	-	30S ribosomal protein S21
1066	 31.13	0	921785..922102	-	105	123968602	-	A9601_10691	-	helix-hairpin-helix DNA-binding motif-containing protein
1067	 23.79	-1	922369..922965	+	198	123968603	-	A9601_10701	-	ATP/GTP-binding motif-containing protein
1068	 24.59	-1	922954..924120	-	388	123968604	-	A9601_10711	-	hypothetical protein
1069	 22.39	-2	924141..924944	-	267	123968605	-	A9601_10721	-	amphipathic helix repeat-containing protein
1070	 28.63	0	924977..925210	-	77	123968606	-	A9601_10731	-	hypothetical protein
1071	 34.07	0	925380..925784	+	134	123968607	-	A9601_10741	-	hypothetical protein
1072	 31.28	0	925808..926488	-	226	123968608	-	A9601_10751	-	peptidase E
1073	 26.96	-1	926509..926979	+	156	123968609	-	A9601_10761	-	GCN5-related N-acetyltransferase
1074	 28.09	0	926986..927309	+	107	123968610	-	A9601_10771	-	hypothetical protein
1075	 20.00	-2	927409..927573	+	54	123968611	-	A9601_10781	-	hypothetical protein
1076	 33.96	0	927666..927983	+	105	123968612	-	A9601_10791	-	hypothetical protein
1077	 21.67	-2	928007..928186	+	59	123968613	-	A9601_10801	-	hypothetical protein
1078	 41.88	+2	928255..928371	+	38	123968614	-	A9601_10811	-	hypothetical protein
1079	 28.15	0	928404..928673	-	89	123968615	-	A9601_10821	-	hypothetical protein
1080	 25.76	-1	928525..928656	+	43	123968616	-	A9601_10831	-	hypothetical protein
1081	 34.78	0	928783..928989	-	68	123968617	-	A9601_10841	-	hypothetical protein
1082	 31.23	0	929122..929502	+	126	123968618	-	A9601_10851	-	hypothetical protein
1083	 30.65	0	929610..929795	+	61	123968619	-	A9601_10861	-	hypothetical protein
1084	 25.74	-1	929839..930141	+	100	123968620	-	A9601_10871	-	hypothetical protein
1085	 30.26	0	930208..930924	+	238	123968621	-	A9601_10881	-	hypothetical protein
1086	 30.14	0	931080..931361	+	93	123968622	-	A9601_10891	-	hypothetical protein
1087	 28.27	0	931412..934018	+	868	123968623	pepN	A9601_10901	-	aminopeptidase N
31.48	MEAN

4.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.