IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
931	 29.71	-1	846959..847510	-	183	33240382	ccp	Pro0932	-	peroxiredoxin
932	 38.40	0	847533..847769	-	78	161407960	rpmB	Pro0933	-	50S ribosomal protein L28
933	 32.54	-1	847814..849715	-	633	33240384	htpG	Pro0934	-	heat shock protein 90
934	 33.33	0	849798..850019	-	73	33240385	-	Pro0935	-	ferredoxin
935	 33.33	0	850027..851202	-	391	33240386	hisZ	Pro0936	-	ATP phosphoribosyltransferase regulatory subunit
936	 37.50	0	851248..852111	-	287	33240387	suhB	Pro0937	-	inositol monophosphatase family protein
937	 38.48	0	852504..854504	+	666	33240388	dnaK	Pro0938	-	molecular chaperone DnaK, heat shock protein hsp70
938	 36.68	0	854488..855414	+	308	33240389	cbpA	Pro0939	-	DnaJ-class molecular chaperone
939	 36.07	0	855464..855865	+	133	33240390	-	Pro0940	-	hypothetical protein
940	 31.84	-1	855876..856811	+	311	33240391	murQ	Pro0941	-	N-acetylmuramic acid-6-phosphate etherase
941	 37.44	0	856901..857338	+	145	33240392	ppiB	Pro0942	-	peptidyl-prolyl cis-trans isomerase
942	 36.38	0	857355..858995	-	546	33240393	ribB	Pro0943	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
943	 35.93	0	859086..860165	+	359	33240394	argC	Pro0944	-	N-acetyl-gamma-glutamyl-phosphate reductase
944	 30.52	-1	860174..860812	-	212	33240395	purN	Pro0945	-	folate-dependent phosphoribosylglycinamide formyltransferase PurN
945	 34.64	0	860990..862591	+	533	33240396	pgi	Pro0946	-	glucose-6-phosphate isomerase
946	 33.14	0	862588..865200	-	870	33240397	leuS	Pro0947	-	leucyl-tRNA synthetase
947	 31.93	-1	865323..866180	+	285	33240398	dapF	Pro0948	-	diaminopimelate epimerase
948	 32.49	-1	866191..867378	+	395	33240399	nifS	Pro0949	-	cysteine sulfinate desulfinase/cysteine desulfurase
949	 30.69	-1	867383..868024	+	213	33240400	-	Pro0950	-	hypothetical protein
950	 28.52	-2	868036..869301	+	421	33240401	dacB	Pro0951	-	D-alanyl-D-alanine carboxypeptidase
951	 34.57	0	869302..869787	-	161	33240402	coaD	Pro0952	-	phosphopantetheine adenylyltransferase
952	 40.37	0	869857..870339	+	160	33240403	-	Pro0953	-	DIM6/NTAB family protein
953	 31.25	-1	870346..872268	+	640	33240404	uvrC	Pro0954	-	excinuclease ABC subunit C
954	 33.69	0	872378..872944	+	188	33240405	-	Pro0955	-	hypothetical protein
955	 34.40	0	872949..873602	+	217	33240406	-	Pro0956	-	PHP family metal-dependent phosphoesterase
956	 32.53	-1	873619..877368	-	1249	33240407	cobN	Pro0957	-	cobalamin biosynthesis protein CobN
957	 35.96	0	877443..878357	+	304	33240408	ilvE	Pro0958	-	branched-chain amino acid aminotransferase
958	 33.19	0	878388..881936	+	1182	33240409	metH	Pro0959	-	putative methionine synthase
959	 42.42	+1	881948..882178	-	76	33240410	-	Pro0960	-	hypothetical protein
960	 32.03	-1	882714..883556	+	280	33240411	APA2	Pro0961	-	putative ATP adenylyltransferase
961	 33.33	0	883553..883750	-	65	33240412	-	Pro0962	-	hypothetical protein
962	 32.77	-1	883950..885014	+	354	33240413	-	Pro0963	-	chaperone
963	 37.13	0	885291..885527	+	78	33240414	-	Pro0964	-	hypothetical protein
964	 29.76	-1	885698..886957	+	419	33240415	trmA	Pro0965	-	SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase
965	 32.30	-1	886946..889459	-	837	33240416	pheT	Pro0966	-	phenylalanyl-tRNA synthetase beta subunit
966	 42.42	+1	889575..889772	+	65	33240417	rpmG	Pro0967	-	50S ribosomal protein L33
967	 35.59	0	889807..890028	+	73	33240418	rpsR	Pro0968	-	30S ribosomal protein S18
968	 27.94	-2	890081..891379	+	432	33240419	vacB	Pro0969	-	exoribonuclease R/ribonuclease II
969	 35.43	0	891444..892967	+	507	33240420	metG	Pro0970	-	methionyl-tRNA synthetase
970	 27.13	-2	892971..893615	+	214	33240421	-	Pro0971	-	hypothetical protein
971	 32.46	-1	893610..894179	-	189	33240422	-	Pro0972	-	hypothetical protein
972	 34.62	0	894365..894676	+	103	33240423	-	Pro0973	-	hypothetical protein
973	 30.22	-1	894692..895237	+	181	33240424	cobU	Pro0974	-	adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase
974	 32.14	-1	895241..895741	+	166	33240425	cspR	Pro0975	-	rRNA methylase
975	 26.83	-2	895780..896379	-	199	33240426	-	Pro0976	-	hypothetical protein
976	 25.64	-2	896976..897131	-	51	33240427	-	Pro0977	-	hypothetical protein
977	 39.39	0	897258..897851	+	197	33240428	ahpC	Pro0978	-	AhpC/TSA family peroxiredoxin
978	 25.15	-2	897891..898721	-	276	33240429	-	Pro0979	-	hypothetical protein
979	 34.53	0	898722..900476	-	584	33240430	ftsH	Pro0980	-	cell division protein FtsH
980	 45.40	+2	900624..900797	+	57	33240431	rpmF	Pro0981	-	50S ribosomal protein L32
981	 26.49	-2	900809..901144	-	111	33240432	-	Pro0982	-	hypothetical protein
982	 32.40	-1	901144..901896	-	250	33240433	-	Pro0983	-	HAD family phosphatase
983	 32.06	-1	901954..903834	+	626	33240434	recJ	Pro0984	-	single-stranded DNA-specific exonuclease
984	 36.39	0	904075..904434	+	119	33240435	-	Pro0985	-	Fe-S cluster protein
985	 33.33	0	904442..904795	+	117	33240436	-	Pro0986	-	hypothetical protein
986	 36.17	0	904792..905073	+	93	33240437	-	Pro0987	-	hypothetical protein
987	 30.47	-1	905204..907510	+	768	33240438	vacB	Pro0988	-	exoribonuclease R
988	 34.83	0	907521..908123	+	200	33240439	ubiX	Pro0989	-	aromatic acid decarboxylase
989	 30.60	-1	908126..908746	+	206	33240440	-	Pro0990	-	hypothetical protein
990	 33.76	0	908811..909278	+	155	33240441	-	Pro0991	-	hypothetical protein
991	 37.07	0	909422..910465	+	347	33240442	acsF	Pro0992	-	magnesium-protoporphyrin IX monomethyl ester cyclase
992	 36.91	0	910472..910834	-	120	33240443	petF	Pro0993	-	ferredoxin, PetF
993	 41.44	+1	910857..911189	-	110	33240444	-	Pro0994	-	hypothetical protein
994	 36.91	0	911318..912769	+	483	33240445	tldD	Pro0995	-	putative modulator of DNA gyrase; TldD
995	 34.20	0	912772..914151	+	459	33240446	pmbA	Pro0996	-	putative modulator of DNA gyrase
996	 31.76	-1	914148..915167	+	339	33240447	fmt	Pro0997	-	methionyl-tRNA formyltransferase
997	 30.84	-1	915168..915890	-	240	33240448	terC	Pro0998	-	membrane protein TerC
998	 31.50	-1	915984..916694	+	236	33240449	-	Pro0999	-	hypothetical protein
999	 32.56	-1	916759..920271	+	1170	33240450	mfd	Pro1000	-	transcriptional-repair coupling factor
1000	 37.40	0	920877..921122	-	81	33240451	-	Pro1001	-	hypothetical protein
1001	 35.15	0	921350..921514	+	54	33240452	-	Pro1002	-	hypothetical protein
1002	 29.26	-1	921538..921807	+	89	33240453	-	Pro1003	-	hypothetical protein
1003	 31.62	-1	921816..922049	+	77	33240454	-	Pro1004	-	hypothetical protein
1004	 27.52	-2	922085..922342	+	85	33240455	-	Pro1005	-	hypothetical protein
1005	 32.43	-1	922787..923227	-	146	33240456	-	Pro1006	-	hypothetical protein
1006	 39.81	0	923453..923668	+	71	33240457	-	Pro1007	-	hypothetical protein
1007	 36.75	0	924662..925831	-	389	33240458	purK	Pro1008	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1008	 33.61	0	925914..927017	+	367	33240459	aroB	Pro1009	-	3-dehydroquinate synthetase
1009	 32.50	-1	927021..928226	-	401	33240460	-	Pro1010	-	hypothetical protein
1010	 35.61	0	928257..929048	+	263	33240461	-	Pro1011	-	hypothetical protein
1011	 38.44	0	929138..929920	-	260	33240462	-	Pro1012	-	putative transcripton factor
1012	 34.21	0	929980..931011	+	343	33240463	nadA	Pro1013	-	quinolinate synthetase
1013	 32.74	-1	931013..932356	-	447	33240464	prc	Pro1014	-	periplasmic protease
1014	 38.07	0	932409..933632	-	407	33240465	ispG	Pro1015	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1015	 34.81	0	933636..934244	-	202	33240466	-	Pro1016	-	Uracil-DNA glycosylase
1016	 34.83	0	934269..934670	-	133	33240467	-	Pro1017	-	lactoylglutathione lyase family protein
1017	 34.60	0	934763..935944	+	393	33240468	-	Pro1018	-	aspartate aminotransferase
1018	 35.55	0	935962..936864	+	300	33240469	phnD	Pro1019	-	ABC-type phosphate/phosphonate transport system periplasmic component
1019	 33.88	0	936861..937598	+	245	33240470	phnE	Pro1020	-	ABC-type phosphate/phosphonate transport system ATPase component
1020	 33.08	0	937604..939175	+	523	33240471	phnC	Pro1021	-	ABC-type phosphate/phosphonate transport system permease component
1021	 39.53	0	939175..939819	+	214	33240472	tesA	Pro1022	-	arylesterase
1022	 36.07	0	939863..940666	-	267	33240473	-	Pro1023	-	hypothetical protein
1023	 34.77	0	940663..941427	-	254	33240474	-	Pro1024	-	hypothetical protein
1024	 37.88	0	941420..941881	-	153	33240475	-	Pro1025	-	hypothetical protein
1025	 36.19	0	941991..942620	+	209	33240476	cbiO	Pro1026	-	ABC transporter ATP-binding protein
1026	 36.75	0	942628..943533	+	301	33240477	-	Pro1027	-	disulfide bond chaperone
1027	 36.77	0	943544..944242	-	232	33240478	-	Pro1028	-	chaperone
1028	 38.25	0	944297..945964	-	555	33240479	prfC	Pro1029	-	peptide chain release factor 3
1029	 38.53	0	945965..946195	-	76	33240480	-	Pro1030	-	hypothetical protein
1030	 35.38	0	946328..946912	+	194	33240481	cioY	Pro1031	-	hypothetical protein
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.