IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
813	 35.21	0	736618..736884	-	88	33240264	-	Pro0814	-	hypothetical protein
814	 40.69	0	737110..739503	-	797	33240265	-	Pro0815	-	ribonucleotide reductase (class II)
815	 36.08	0	739564..740256	+	230	33240266	smtA	Pro0816	-	SAM-dependent methyltransferase
816	 31.02	-1	740329..741582	-	417	33240267	pqqL	Pro0817	-	Zn-dependent peptidase
817	 36.62	0	741583..742860	-	425	33240268	pqqL	Pro0818	-	Zn-dependent peptidase
818	 36.02	0	742912..743655	+	247	33240269	pcyA	Pro0819	-	phycocyanobilin:ferredoxin oxidoreductase
819	 35.32	0	743688..744542	+	284	33240270	devB	Pro0820	-	DevB-like secretion protein
820	 37.94	0	744542..745714	+	390	33240271	devC	Pro0821	-	ABC transporter transmembrane protein
821	 37.69	0	745729..746439	+	236	33240272	devA	Pro0822	-	ABC transporter ATP-binding protein
822	 40.00	0	746469..746618	+	49	33240273	-	Pro0823	-	hypothetical protein
823	 36.98	0	746717..747649	+	310	33240274	wcaA	Pro0824	-	glycosyl transferase, family 2
824	 40.73	0	747785..748501	+	238	33240275	rpsB	Pro0825	-	30S ribosomal protein S2
825	 37.46	0	748578..749231	+	217	33240276	tsf	Pro0826	-	elongation factor Ts
826	 29.16	-1	749237..750433	+	398	33240277	-	Pro0827	-	hypothetical protein
827	 35.87	0	750391..752916	+	841	33240278	recG	Pro0828	-	ATP-dependent DNA helicase recG
828	 40.86	0	753064..753741	+	225	33240279	ddpX	Pro0829	-	D-alanyl-D-alanine dipeptidase
829	 36.39	0	753696..755492	-	598	33240280	sir	Pro0830	-	sulfite reductase subunit beta
830	 37.26	0	755581..757746	+	721	33240281	glyS	Pro0831	-	glycyl-tRNA synthetase beta subunit
831	 40.10	0	757756..759099	-	447	33240282	chlP	Pro0832	-	aromatic-ring hydroxylase (flavoprotein monooxygenase)
832	 38.08	0	759211..759969	+	252	33240283	vanY	Pro0833	-	D-alanyl-D-alanine carboxypeptidase
833	 37.66	0	760056..761858	+	600	33240284	typA	Pro0834	-	tyrosine binding protein
834	 31.64	-1	761882..762235	+	117	33240285	-	Pro0835	-	hypothetical protein
835	 39.09	0	762434..763162	+	242	33240286	-	Pro0836	-	unclassified ABC-type transport system ATPase component
836	 32.59	-1	763159..764370	+	403	33240287	-	Pro0837	-	putative permease
837	 33.54	0	764388..765338	+	316	33240288	ccmC	Pro0838	-	putative heme transporter
838	 40.19	0	765353..766096	-	247	33240289	rpe	Pro0839	-	Pentose-5-phosphate-3-epimerase
839	 42.39	+1	766305..767309	+	334	33240290	glpX	Pro0840	-	fructose 1,6-bisphosphatase II
840	 36.07	0	767342..768655	+	437	33240291	hemA	Pro0841	-	glutamyl-tRNA reductase
841	 39.97	0	768769..770064	+	431	33240292	glgC	Pro0842	-	glucose-1-phosphate adenylyltransferase
842	 38.62	0	770220..771638	+	472	33240293	gnd	Pro0843	-	6-phosphogluconate dehydrogenase
843	 38.80	0	771646..772359	+	237	33240294	nagB	Pro0844	-	6-phosphogluconolactonase
844	 38.74	0	772434..772988	+	184	33240295	-	Pro0845	-	NAD dependent epimerase/dehydratase
845	 38.97	0	772975..773382	+	135	33240296	-	Pro0846	-	hypothetical protein
846	 40.01	0	773383..775059	-	558	33240297	ilvD	Pro0847	-	dihydroxy-acid dehydratase
847	 38.67	0	775100..775399	-	99	33240298	-	Pro0848	-	hypothetical protein
848	 37.54	0	775424..776041	-	205	33240299	upp	Pro0849	-	Uracil phosphoribosyltransferase
849	 34.70	0	776110..776622	+	170	33240300	-	Pro0850	-	pentapeptide repeat-containing protein
850	 36.03	0	776653..777726	+	357	33240301	-	Pro0851	-	G3E family GTPase
851	 36.98	0	777826..778017	+	63	33240302	-	Pro0852	-	Zn-ribbon protein
852	 38.46	0	778133..778405	+	90	33240303	purS	Pro0853	-	phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
853	 37.44	0	778418..779074	+	218	33240304	purL	Pro0854	-	phosphoribosylformylglycinamidine synthase domain-containing protein
854	 40.97	0	779131..780204	-	357	33240305	cbbA	Pro0855	-	fructose-1,6-bisphosphate aldolase
855	 39.51	0	780355..781422	-	355	33240306	fda	Pro0856	-	fructose-1,6-bisphosphate aldolase class I
856	 37.02	0	781571..782683	-	370	33240307	mviM	Pro0857	-	putative oxidoreductase
857	 29.34	-1	782692..783042	-	116	33240308	-	Pro0858	-	hypothetical protein
858	 38.91	0	783084..783962	-	292	33240309	accD	Pro0859	-	acetyl-CoA carboxylase subunit beta
859	 31.97	-1	783996..784580	-	194	33240310	pulO	Pro0860	-	prepilin peptidase
860	 36.89	0	784660..785559	-	299	33240311	prk	Pro0861	-	phosphoribulokinase
861	 36.91	0	785650..786738	-	362	33240312	leuB	Pro0862	-	isocitrate dehydrogenase
862	 34.30	0	786778..787815	-	345	33240313	lpxD	Pro0863	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
863	 33.61	0	787848..788942	-	364	33240314	proB	Pro0864	-	gamma-glutamyl kinase
864	 29.24	-1	788939..789451	-	170	33240315	-	Pro0865	-	HAD superfamily hydrolase
865	 33.33	0	789457..789993	-	178	33240316	-	Pro0866	-	hypothetical protein
866	 39.61	0	790024..790485	-	153	33240317	-	Pro0867	-	endonuclease
867	 33.91	0	790478..791512	-	344	33240318	-	Pro0868	-	hypothetical protein
868	 32.22	-1	791603..792772	-	389	33240319	-	Pro0869	-	hypothetical protein
869	 33.87	0	792875..793432	-	185	33240320	-	Pro0870	-	thioredoxin family protein
870	 32.78	-1	793492..795120	-	542	33240321	cheY	Pro0871	-	CheY-like domain-containing protein
871	 37.22	0	795218..795988	-	256	33240322	hisA	Pro0872	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
872	 34.00	0	796099..797001	+	300	33240323	wcaG	Pro0873	-	putative mRNA binding protein
873	 34.62	0	796982..797524	-	180	33240324	pgsA	Pro0874	-	phosphatidylglycerophosphate synthase
874	 32.82	-1	797810..798394	+	194	33240325	-	Pro0875	-	glutaredoxin domain/DNA-binding domain-containing protein
875	 26.02	-2	798398..798643	+	81	33240326	-	Pro0876	-	hypothetical protein
876	 34.46	0	798633..799523	+	296	33240327	wecD	Pro0877	-	GCN5-related N-acetyltransferase
877	 35.98	0	799556..799744	-	62	33240328	-	Pro0878	-	hypothetical protein
878	 34.22	0	799764..800441	-	225	33240329	-	Pro0879	-	putative NADH-flavin reductase
879	 34.56	0	800525..801178	-	217	33240330	nth	Pro0880	-	putative endonuclease
880	 35.49	0	801199..802263	+	354	33240331	potA	Pro0881	-	ABC-type spermidine/putrescine transport system ATPase component
881	 36.63	0	802582..803127	+	181	33240332	ftn	Pro0882	-	ferritin
882	 28.72	-2	803155..803436	-	93	33240333	-	Pro0883	-	hypothetical protein
883	 40.57	0	803442..804035	-	197	33240334	-	Pro0884	-	cAMP family transcriptional regulator
884	 42.23	+1	804325..805380	-	351	33240335	pcbC	Pro0885	-	chlorophyll a/b-binding light-harvesting protein PcbC
885	 30.74	-1	805599..806330	+	243	33240336	-	Pro0886	-	hypothetical protein
886	 31.37	-1	806335..806538	+	67	33240337	-	Pro0887	-	Zn-ribbon protein
887	 29.21	-1	806551..807351	-	266	33240338	modF	Pro0888	-	ABC-type molybdenum transport system ATPase component
888	 30.39	-1	807333..807434	-	33	33240339	-	Pro0889	-	hypothetical protein
889	 31.69	-1	807436..808773	-	445	33240340	hcaE	Pro0890	-	Rieske iron-sulfur protein 2Fe-2S subunit
890	 42.47	+1	808981..809166	-	61	33240341	-	Pro0891	-	hypothetical protein
891	 42.94	+1	809662..810723	+	353	33240342	pcbG	Pro0892	-	chlorophyll a/b binding light harvesting protein PcbG
892	 36.81	0	811319..812296	-	325	33240343	ansA	Pro0893	-	L-asparaginase II
893	 25.44	-2	812297..812803	-	168	33240344	-	Pro0894	-	hypothetical protein
894	 30.46	-1	812815..813162	-	115	33240345	-	Pro0895	-	hypothetical protein
895	 39.94	0	813155..813790	-	211	33240346	-	Pro0896	-	hypothetical protein
896	 36.13	0	813913..817239	+	1108	33240347	carB	Pro0897	-	carbamoyl phosphate synthase large subunit
897	 29.39	-1	817254..817481	-	75	33240348	-	Pro0898	-	hypothetical protein
898	 33.85	0	817556..819298	-	580	33240349	mdlB	Pro0899	-	multidrug ABC transporter
899	 40.74	0	819317..819532	+	71	33240350	-	Pro0900	-	S4-like RNA-binding protein
900	 38.25	0	819548..820279	+	243	33240351	tpiA	Pro0901	-	triosephosphate isomerase
901	 33.59	0	820320..821105	+	261	33240352	folP	Pro0902	-	dihydropteroate synthase
902	 36.25	0	821126..825139	-	1337	33240353	chlH	Pro0903	-	magnesium chelatase
903	 38.87	0	825277..826107	+	276	33240354	dapB	Pro0904	-	dihydrodipicolinate reductase
904	 31.79	-1	826124..826771	+	215	33240355	-	Pro0905	-	hypothetical protein
905	 29.48	-1	826833..827948	+	371	33240356	ubiH	Pro0906	-	2-polyprenyl-6-methoxyphenol hydroxylase related enzyme
906	 35.50	0	827969..828199	+	76	33240357	-	Pro0907	-	hypothetical protein
907	 33.50	0	828364..828969	+	201	33240358	-	Pro0908	-	hypothetical protein
908	 30.47	-1	828972..829565	+	197	33240359	-	Pro0909	-	hypothetical protein
909	 35.61	0	829645..829995	+	116	33240360	-	Pro0910	-	hypothetical protein
910	 34.92	0	830615..830929	+	104	33240361	-	Pro0911	-	hypothetical protein
911	 26.25	-2	831289..831669	-	126	33240362	-	Pro0912	-	hypothetical protein
912	 35.38	0	831770..831964	-	64	33240363	-	Pro0913	-	hypothetical protein
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.