IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
753	 33.93	0	685286..685954	-	222	33240204	ruvA	Pro0754	-	Holliday junction resolvasome DNA-binding subunit
754	 42.31	+1	685980..686369	-	129	33240205	-	Pro0755	-	hypothetical protein
755	 36.82	0	686395..687282	-	295	33240206	rhaT	Pro0756	-	DMT family permease
756	 40.22	0	687410..689470	+	686	33240207	dnaG	Pro0757	-	DNA primase
757	 30.15	-1	689520..689990	-	156	33240208	-	Pro0758	-	hypothetical protein
758	 38.21	0	690057..691328	-	423	33240209	dinP	Pro0759	-	nucleotidyltransferase/DNA polymerase
759	 42.36	+1	691340..691771	-	143	33240210	umuD	Pro0760	-	family S24 peptidase
760	 35.84	0	691842..692279	-	145	33240211	-	Pro0761	-	hypothetical protein
761	 36.72	0	692310..692693	-	127	33240212	-	Pro0762	-	hypothetical protein
762	 38.21	0	692833..693672	+	279	33240213	ksgA	Pro0763	-	dimethyladenosine transferase
763	 37.50	0	693669..694628	+	319	33240214	ispE	Pro0764	-	4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase
764	 38.38	0	694625..694981	+	118	33240215	-	Pro0765	-	hypothetical protein
765	 36.79	0	695189..696172	+	327	33240216	acoB	Pro0766	-	pyruvate dehydrogenase E1 beta subunit
766	 35.76	0	696176..697660	+	494	33240217	secD	Pro0767	-	preprotein translocase subunit SecD
767	 33.54	0	697670..698635	+	321	33240218	secF	Pro0768	-	preprotein translocase subunit SecF
768	 33.33	0	698656..698880	+	74	33240219	-	Pro0769	-	hypothetical protein
769	 32.82	-1	698877..699854	-	325	33240220	perM	Pro0770	-	hypothetical protein
770	 38.42	0	699968..700321	-	117	33240221	psb28	Pro0771	-	photosystem II reaction center protein Psb28
771	 35.82	0	700385..701428	-	347	33240222	-	Pro0772	-	tRNA 2-selenouridine synthase
772	 39.67	0	701466..702191	+	241	33240223	-	Pro0773	-	hypothetical protein
773	 41.22	+1	702305..702748	+	147	33240224	rsbW	Pro0774	-	anti-sigma regulatory factor (Ser/Thr protein kinase)
774	 32.91	-1	702698..702934	-	78	33240225	-	Pro0775	-	hypothetical protein
775	 32.79	-1	702956..703687	-	243	33240226	-	Pro0776	-	alpha/beta fold family hydrolase
776	 41.21	+1	703846..704556	+	236	33240227	dnaQ	Pro0777	-	putative DNA polymerase III, epsilon subunit
777	 37.08	0	704687..704926	+	79	33240228	-	Pro0778	-	hypothetical protein
778	 37.36	0	705071..706336	+	421	33240229	hisS	Pro0779	-	histidyl-tRNA synthetase
779	 24.81	-2	706371..706628	+	85	33240230	-	Pro0780	-	hypothetical protein
780	 34.22	0	706628..706966	+	112	33240231	-	Pro0781	-	hypothetical protein
781	 40.09	0	707091..707312	+	73	33240232	-	Pro0782	-	hypothetical protein
782	 42.80	+1	707932..708987	+	351	33240233	pcbA	Pro0783	-	chlorophyll a/b binding light harvesting protein PcbA
783	 35.36	0	709152..710534	+	460	33240234	gltS	Pro0784	-	putative sodium:solute symporter, ESS family
784	 31.78	-1	710600..710857	+	85	33240235	-	Pro0785	-	hypothetical protein
785	 31.20	-1	710887..711588	-	233	33240236	gst	Pro0786	-	glutathione S-transferase omega class
786	 33.87	0	711684..712241	+	185	33240237	-	Pro0787	-	hypothetical protein
787	 29.12	-1	712345..712605	+	86	33240238	-	Pro0788	-	hypothetical protein
788	 34.74	0	712632..713342	-	236	33240239	fabG	Pro0789	-	short-chain dehydrogenase/reductase family protein
789	 35.43	0	713347..714633	-	428	33240240	lcyE	Pro0790	-	lycopene epsilon cyclase
790	 31.64	-1	714903..715907	+	334	33240241	por	Pro0791	-	putative light-dependent protochlorophyllide oxido-reductase
791	 32.45	-1	715924..716940	-	338	33240242	mscS	Pro0792	-	small-conductance mechanosensitive channel
792	 30.45	-1	717090..717644	-	184	33240243	pncA	Pro0793	-	isochorismatase family hydrolase
793	 38.66	0	717794..718300	+	168	33240244	fur	Pro0794	-	Fe2+/Zn2+ uptake regulation protein
794	 34.19	0	718321..719250	-	309	33240245	-	Pro0795	-	NifB/MoaA family Fe-S oxidoreductase
795	 30.49	-1	719298..720527	-	409	33240246	-	Pro0796	-	putative glucosylglycerolphosphate phosphatase
796	 32.29	-1	720713..722245	+	510	33240247	-	Pro0797	-	hypothetical protein
797	 27.00	-2	722345..723496	+	383	33240248	-	Pro0798	-	homoserine/choline kinase family protein
798	 37.30	0	723575..724279	+	234	33240249	-	Pro0799	-	hypothetical protein
799	 38.00	0	724313..725641	+	442	33240250	MET17	Pro0800	-	putative O-Acetyl homoserine sulfhydrylase
800	 37.25	0	725657..726550	+	297	33240251	metA	Pro0801	-	putative homoserine O-succinyltransferase
801	 32.09	-1	726553..727116	+	187	33240252	alkB	Pro0802	-	alkylated DNA repair protein
802	 44.68	+1	727144..727425	-	93	33240253	-	Pro0803	-	hypothetical protein
803	 36.76	0	727573..729150	-	525	33240254	SUL1	Pro0804	-	putative sulfate transporter
804	 33.80	0	729183..730469	-	428	33240255	glcD	Pro0805	-	FAD linked oxidase, N-terminal
805	 36.19	0	730556..731605	+	349	33240256	-	Pro0806	-	hypothetical protein
806	 35.27	0	731998..732255	+	85	33240257	-	Pro0807	-	hypothetical protein
807	 34.98	0	732239..733879	-	546	33240258	cetA	Pro0808	-	GMC family oxidoreductase
808	 38.94	0	733949..734251	-	100	33240259	-	Pro0809	-	hypothetical protein
809	 32.08	-1	734416..734892	+	158	33240260	-	Pro0810	-	pentapeptide repeat-containing protein
810	 22.68	-2	734897..735262	-	121	33240261	-	Pro0811	-	hypothetical protein
811	 36.08	0	735265..735774	-	169	33240262	-	Pro0812	-	hypothetical protein
812	 39.49	0	736371..736565	+	64	33240263	-	Pro0813	-	hypothetical protein
813	 35.21	0	736618..736884	-	88	33240264	-	Pro0814	-	hypothetical protein
814	 40.69	0	737110..739503	-	797	33240265	-	Pro0815	-	ribonucleotide reductase (class II)
815	 36.08	0	739564..740256	+	230	33240266	smtA	Pro0816	-	SAM-dependent methyltransferase
816	 31.02	-1	740329..741582	-	417	33240267	pqqL	Pro0817	-	Zn-dependent peptidase
817	 36.62	0	741583..742860	-	425	33240268	pqqL	Pro0818	-	Zn-dependent peptidase
818	 36.02	0	742912..743655	+	247	33240269	pcyA	Pro0819	-	phycocyanobilin:ferredoxin oxidoreductase
819	 35.32	0	743688..744542	+	284	33240270	devB	Pro0820	-	DevB-like secretion protein
820	 37.94	0	744542..745714	+	390	33240271	devC	Pro0821	-	ABC transporter transmembrane protein
821	 37.69	0	745729..746439	+	236	33240272	devA	Pro0822	-	ABC transporter ATP-binding protein
822	 40.00	0	746469..746618	+	49	33240273	-	Pro0823	-	hypothetical protein
823	 36.98	0	746717..747649	+	310	33240274	wcaA	Pro0824	-	glycosyl transferase, family 2
824	 40.73	0	747785..748501	+	238	33240275	rpsB	Pro0825	-	30S ribosomal protein S2
825	 37.46	0	748578..749231	+	217	33240276	tsf	Pro0826	-	elongation factor Ts
826	 29.16	-1	749237..750433	+	398	33240277	-	Pro0827	-	hypothetical protein
827	 35.87	0	750391..752916	+	841	33240278	recG	Pro0828	-	ATP-dependent DNA helicase recG
828	 40.86	0	753064..753741	+	225	33240279	ddpX	Pro0829	-	D-alanyl-D-alanine dipeptidase
829	 36.39	0	753696..755492	-	598	33240280	sir	Pro0830	-	sulfite reductase subunit beta
830	 37.26	0	755581..757746	+	721	33240281	glyS	Pro0831	-	glycyl-tRNA synthetase beta subunit
831	 40.10	0	757756..759099	-	447	33240282	chlP	Pro0832	-	aromatic-ring hydroxylase (flavoprotein monooxygenase)
832	 38.08	0	759211..759969	+	252	33240283	vanY	Pro0833	-	D-alanyl-D-alanine carboxypeptidase
833	 37.66	0	760056..761858	+	600	33240284	typA	Pro0834	-	tyrosine binding protein
834	 31.64	-1	761882..762235	+	117	33240285	-	Pro0835	-	hypothetical protein
835	 39.09	0	762434..763162	+	242	33240286	-	Pro0836	-	unclassified ABC-type transport system ATPase component
836	 32.59	-1	763159..764370	+	403	33240287	-	Pro0837	-	putative permease
837	 33.54	0	764388..765338	+	316	33240288	ccmC	Pro0838	-	putative heme transporter
838	 40.19	0	765353..766096	-	247	33240289	rpe	Pro0839	-	Pentose-5-phosphate-3-epimerase
839	 42.39	+1	766305..767309	+	334	33240290	glpX	Pro0840	-	fructose 1,6-bisphosphatase II
840	 36.07	0	767342..768655	+	437	33240291	hemA	Pro0841	-	glutamyl-tRNA reductase
841	 39.97	0	768769..770064	+	431	33240292	glgC	Pro0842	-	glucose-1-phosphate adenylyltransferase
842	 38.62	0	770220..771638	+	472	33240293	gnd	Pro0843	-	6-phosphogluconate dehydrogenase
843	 38.80	0	771646..772359	+	237	33240294	nagB	Pro0844	-	6-phosphogluconolactonase
844	 38.74	0	772434..772988	+	184	33240295	-	Pro0845	-	NAD dependent epimerase/dehydratase
845	 38.97	0	772975..773382	+	135	33240296	-	Pro0846	-	hypothetical protein
846	 40.01	0	773383..775059	-	558	33240297	ilvD	Pro0847	-	dihydroxy-acid dehydratase
847	 38.67	0	775100..775399	-	99	33240298	-	Pro0848	-	hypothetical protein
848	 37.54	0	775424..776041	-	205	33240299	upp	Pro0849	-	Uracil phosphoribosyltransferase
849	 34.70	0	776110..776622	+	170	33240300	-	Pro0850	-	pentapeptide repeat-containing protein
850	 36.03	0	776653..777726	+	357	33240301	-	Pro0851	-	G3E family GTPase
851	 36.98	0	777826..778017	+	63	33240302	-	Pro0852	-	Zn-ribbon protein
852	 38.46	0	778133..778405	+	90	33240303	purS	Pro0853	-	phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.