IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.01   STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
655	 23.53	-2	607118..607219	+	33	33240106	-	Pro0656	-	hypothetical protein
656	 36.78	0	607247..607885	+	212	33240107	-	Pro0657	-	hypothetical protein
657	 42.12	+1	607985..608257	-	90	33240108	-	Pro0658	-	hypothetical protein
658	 36.86	0	608429..608797	-	122	33240109	-	Pro0659	-	hypothetical protein
659	 33.91	0	609021..609194	+	57	33240110	-	Pro0660	-	hypothetical protein
660	 32.64	-1	609841..610272	+	143	33240111	-	Pro0661	-	hypothetical protein
661	 39.15	0	610371..611435	-	354	33240112	-	Pro0662	-	NADPH-dependent reductase
662	 33.87	0	612367..612552	+	61	33240113	-	Pro0663	-	hypothetical protein
663	 40.25	0	612889..613047	-	52	33240114	-	Pro0664	-	hypothetical protein
664	 33.89	0	613294..613473	-	59	33240115	-	Pro0665	-	hypothetical protein
665	 34.60	0	614078..614473	+	131	33240116	-	Pro0666	-	hypothetical protein
666	 35.53	0	614554..614826	+	90	33240117	-	Pro0667	-	hypothetical protein
667	 36.41	0	615231..615425	+	64	33240118	-	Pro0668	-	hypothetical protein
668	 34.14	0	615718..616089	-	123	33240119	-	Pro0669	-	hypothetical protein
669	 36.36	0	616298..616528	+	76	33240120	-	Pro0670	-	hypothetical protein
670	 35.98	0	616559..616747	-	62	33240121	-	Pro0671	-	hypothetical protein
671	 34.90	0	617076..617714	+	212	33240122	-	Pro0672	-	hypothetical protein
672	 38.27	0	617834..618583	-	249	33240123	-	Pro0673	-	ABC-type polar amino acid transport system ATPase component
673	 35.98	0	618590..619609	-	339	33240124	-	Pro0674	-	ABC-type amino acid transport system permease component
674	 33.67	0	619627..620526	-	299	33240125	-	Pro0675	-	ABC-type amino acid transport system permease component
675	 38.27	0	620558..621610	-	350	33240126	-	Pro0676	-	amino acid ABC transporter periplasmic protein
676	 34.53	0	623197..623781	+	194	33240127	-	Pro0677	-	hypothetical protein
677	 39.52	0	623897..624106	+	69	33240128	-	Pro0678	-	hypothetical protein
678	 33.81	0	624259..626154	-	631	33240129	-	Pro0679	-	nucleotide-diphosphate-sugar epimerase, membrane associated
679	 29.37	-1	626255..627238	-	327	33240130	rfe	Pro0680	-	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
680	 33.00	-1	627245..628147	-	300	33240131	-	Pro0681	-	nucleoside-diphosphate-sugar epimerase
681	 30.20	-1	628144..629292	-	382	33240132	rfaG	Pro0682	-	glycosyltransferase
682	 42.09	+1	629584..630120	-	178	33240133	-	Pro0683	-	hypothetical protein
683	 36.72	0	630215..630391	-	58	33240134	-	Pro0684	-	hypothetical protein
684	 43.94	+1	630559..630756	-	65	33240135	-	Pro0685	-	hypothetical protein
685	 38.18	0	630945..631109	+	54	33240136	-	Pro0686	-	hypothetical protein
686	 34.96	0	632104..632349	+	81	33240137	-	Pro0687	-	hypothetical protein
687	 32.34	-1	632352..632552	-	66	33240138	-	Pro0688	-	hypothetical protein
688	 35.88	0	633210..633563	-	117	33240139	-	Pro0689	-	hypothetical protein
689	 33.33	0	634024..634422	-	132	33240140	-	Pro0690	-	hypothetical protein
690	 36.72	0	634861..635037	-	58	33240141	-	Pro0691	-	hypothetical protein
691	 41.29	+1	635119..635319	-	66	33240142	-	Pro0692	-	hypothetical protein
692	 36.75	0	635488..635604	-	38	33240143	-	Pro0693	-	hypothetical protein
693	 32.34	-1	635829..636029	-	66	33240144	-	Pro0694	-	hypothetical protein
694	 33.33	0	636428..636811	+	127	33240145	-	Pro0695	-	hypothetical protein
695	 35.33	0	636868..637368	-	166	33240146	-	Pro0696	-	hypothetical protein
696	 41.11	+1	637643..637822	-	59	33240147	-	Pro0697	-	hypothetical protein
697	 38.49	0	638341..638922	+	193	33240148	-	Pro0698	-	hypothetical protein
698	 40.72	0	638919..640841	+	640	33240149	sdhA	Pro0699	-	succinate dehydrogenase flavoprotein subunit
699	 39.81	0	640838..641578	+	246	33240150	sdhB	Pro0700	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
700	 37.27	0	642190..642519	+	109	33240151	-	Pro0701	-	hypothetical protein
701	 35.36	0	642819..645533	-	904	33240152	sbcC	Pro0702	-	ATPase
702	 40.00	0	645540..646724	-	394	33240153	sbcD	Pro0703	-	DNA repair exonuclease
703	 37.08	0	646988..647254	+	88	33240154	-	Pro0704	-	SH3-like domain-containing protein
704	 32.62	-1	647448..647588	+	46	33240155	-	Pro0705	-	hypothetical protein
705	 31.54	-1	647629..647907	-	92	33240156	-	Pro0706	-	Zn ribbon-like protein
706	 29.73	-1	647929..649206	-	425	33240157	hsdS	Pro0707	-	restriction endonuclease S subunit
707	 34.02	0	649203..650945	-	580	33240158	hsdM	Pro0708	-	Type I restriction-modification system methyltransferase subunit
708	 30.70	-1	651296..651523	-	75	33240159	-	Pro0709	-	hypothetical protein
709	 38.14	0	651677..652342	+	221	33240160	fabG	Pro0710	-	short-chain dehydrogenase/reductase family protein
710	 36.56	0	652463..652648	+	61	33240161	-	Pro0711	-	hypothetical protein
711	 33.14	0	652685..653206	-	173	33240162	-	Pro0712	-	hypothetical protein
712	 36.81	0	653296..653439	+	47	33240163	-	Pro0713	-	hypothetical protein
713	 39.08	0	653491..653664	-	57	33240164	-	Pro0714	-	hypothetical protein
714	 34.16	0	653864..654106	-	80	33240165	-	Pro0715	-	hypothetical protein
715	 36.88	0	654219..654725	-	168	33240166	-	Pro0716	-	hypothetical protein
716	 34.90	0	655047..655301	+	84	33240167	-	Pro0717	-	hypothetical protein
717	 35.35	0	655340..655537	+	65	33240168	-	Pro0718	-	hypothetical protein
718	 31.55	-1	655664..656167	-	167	33240169	-	Pro0719	-	hypothetical protein
719	 34.62	0	656300..657079	-	259	33240170	-	Pro0720	-	hypothetical protein
720	 29.71	-1	657313..657864	+	183	33240171	-	Pro0721	-	hypothetical protein
721	 27.78	-2	657874..658251	-	125	33240172	-	Pro0722	-	hypothetical protein
722	 36.82	0	658375..658575	-	66	33240173	-	Pro0723	-	hypothetical protein
723	 37.38	0	658863..659183	-	106	33240174	-	Pro0724	-	hypothetical protein
724	 40.58	0	659846..660052	+	68	33240175	-	Pro0725	-	hypothetical protein
725	 36.67	0	660478..660657	-	59	33240176	-	Pro0726	-	hypothetical protein
726	 38.01	0	660844..662040	-	398	33240177	wcaA	Pro0727	-	glycosyltransferase
727	 33.33	0	662087..663865	+	592	33240178	amyA	Pro0728	-	glycosidase
728	 34.33	0	663855..664658	+	267	33240179	-	Pro0729	-	mannosyl-3-phosphoglycerate phosphatase
729	 33.24	0	664663..665682	+	339	33240180	-	Pro0730	-	phosphoribulokinase/uridine kinase family protein
730	 35.09	0	665755..665982	+	75	33240181	-	Pro0731	-	hypothetical protein
731	 33.07	0	666151..666528	+	125	33240182	-	Pro0732	-	hypothetical protein
732	 36.30	0	666626..666760	+	44	33240183	-	Pro0733	-	hypothetical protein
733	 36.59	0	666828..667103	-	91	33240184	-	Pro0734	-	hypothetical protein
734	 37.36	0	667190..668059	+	289	33240185	uppP	Pro0735	-	undecaprenyl pyrophosphate phosphatase
735	 24.24	-2	668062..668226	+	54	33240186	-	Pro0736	-	hypothetical protein
736	 43.01	+1	668400..669743	-	447	33240187	-	Pro0737	-	porin-like protein
737	 33.33	0	670322..670666	-	114	33240188	-	Pro0738	-	hypothetical protein
738	 26.67	-2	671067..671231	-	54	33240189	-	Pro0739	-	hypothetical protein
739	 35.29	0	671233..671946	-	237	33240190	msrA	Pro0740	-	peptide methionine sulfoxide reductase
740	 36.90	0	671971..672222	-	83	33240191	-	Pro0741	-	hypothetical protein
741	 36.87	0	672319..674070	-	583	33240192	mdlB	Pro0742	-	multidrug ABC transporter
742	 36.27	0	674156..674461	+	101	33240193	-	Pro0743	-	hypothetical protein
743	 38.50	0	674580..675605	+	341	33240194	trpD	Pro0744	-	anthranilate phosphoribosyltransferase
744	 38.31	0	675646..676791	+	381	33240195	carA	Pro0745	-	carbamoyl phosphate synthase small subunit
745	 37.12	0	676799..677221	+	140	33240196	spoIIAA	Pro0746	-	anti-anti-sigma regulatory factor
746	 39.86	0	677218..677631	+	137	33240197	-	Pro0747	-	hypothetical protein
747	 37.23	0	677636..678892	+	418	33240198	spoU	Pro0748	-	rRNA methylase
748	 39.83	0	679040..679270	+	76	33240199	-	Pro0749	-	hypothetical protein
749	 39.56	0	679321..680781	+	486	33240200	gatA	Pro0750	-	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
750	 35.61	0	681024..684530	+	1168	33240201	dnaE	Pro0751	-	DNA polymerase III subunit alpha
751	 33.86	0	684536..684913	-	125	33240202	-	Pro0752	-	hypothetical protein
752	 36.67	0	684948..685217	-	89	33240203	rpsO	Pro0753	-	30S ribosomal protein S15
753	 33.93	0	685286..685954	-	222	33240204	ruvA	Pro0754	-	Holliday junction resolvasome DNA-binding subunit
754	 42.31	+1	685980..686369	-	129	33240205	-	Pro0755	-	hypothetical protein
37.01	MEAN

3.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.