IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.01   STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
545	 40.55	0	518864..520456	-	530	33239996	chlB	Pro0545	-	light-independent protochlorophyllide reductase subunit B
546	 40.57	0	520461..521717	-	418	33239997	chlN	Pro0546	-	light-independent protochlorophyllide reductase subunit N
547	 42.74	+1	521869..522240	-	123	33239998	-	Pro0547	-	hypothetical protein
548	 44.70	+1	522339..523112	+	257	33239999	-	Pro0548	-	hypothetical protein
549	 40.51	0	523130..523714	-	194	33240000	-	Pro0549	-	HAM1 family protein
550	 51.28	+2	524074..524385	+	103	33240001	ccmK/csoS1	Pro0550	-	carboxysome shell protein CsoS1
551	 45.36	+2	524454..525866	+	470	33240002	rbcL	Pro0551	-	ribulose bisophosphate carboxylase
552	 45.32	+2	525970..526311	+	113	33240003	rbcS	Pro0552	-	ribulose bisphosphate carboxylase, small chain
553	 43.42	+1	526414..528792	+	792	33240004	csoS2	Pro0553	-	carboxysome shell protein CsoS2
554	 39.01	0	528800..530332	+	510	33240005	csoS3	Pro0554	-	carboxysome shell protein CsoS3
555	 43.12	+1	530334..530609	+	91	33240006	-	Pro0555	-	putative carboxysome peptide A
556	 43.25	+1	530609..530860	+	83	33240007	-	Pro0556	-	putative carboxysome peptide B
557	 42.94	+1	530906..531415	+	169	33240008	ccmK/csoS1	Pro0557	-	carboxysome shell peptide, CsoS1
558	 35.98	0	531488..531751	+	87	33240009	-	Pro0558	-	pterin-4 alpha-carbinolamine dehydratase-like protein
559	 46.67	+2	531759..531983	-	74	33240010	-	Pro0559	-	hypothetical protein
560	 41.10	+1	532072..532470	-	132	33240011	tdcF	Pro0560	-	putative translation initiation inhibitor
561	 35.96	0	532524..533285	-	253	33240012	gloB	Pro0561	-	metallo-beta-lactamase superfamily hydrolase
562	 41.51	+1	533335..533982	+	215	33240013	hisG	Pro0562	-	ATP phosphoribosyltransferase catalytic subunit
563	 35.12	0	533987..535780	+	597	33240014	mdlB	Pro0563	-	multidrug ABC transporter
564	 38.67	0	535799..536341	+	180	33240015	wecD	Pro0564	-	acetyltransferase
565	 31.93	-1	536360..537070	-	236	33240016	wcaA	Pro0565	-	glycosyltransferase
566	 37.52	0	537058..537702	-	214	33240017	-	Pro0566	-	hypothetical protein
567	 39.39	0	537957..539342	+	461	33240018	dnaA	Pro0567	-	chromosomal replication initiation protein
568	 38.37	0	539358..540608	-	416	33240019	gst	Pro0568	-	glutaredoxin-like domain-containing protein
569	 34.65	0	540650..542011	+	453	33240020	gor	Pro0569	-	glutathione reductase
570	 36.94	0	542066..543145	-	359	33240021	ECM27	Pro0570	-	putative CaCA family sodium/calcium exchanger
571	 37.04	0	543290..544369	+	359	33240022	pyrC	Pro0571	-	dihydroorotase
572	 35.02	0	544847..545083	+	78	33240023	-	Pro0572	-	inorganic carbon transport protein, IctA
573	 33.93	0	545087..545419	+	110	33240024	-	Pro0573	-	hypothetical protein
574	 37.69	0	545500..546303	+	267	33240025	trpA	Pro0574	-	tryptophan synthase subunit alpha
575	 38.06	0	546430..546789	-	119	33240026	-	Pro0575	-	transciptional regulator
576	 32.59	-1	546894..547163	+	89	33240027	-	Pro0576	-	YciI-like protein
577	 34.37	0	547139..547525	-	128	33240028	cccA	Pro0577	-	cytochrome C
578	 37.46	0	547554..547868	-	104	33240029	-	Pro0578	-	hypothetical protein
579	 40.44	0	547873..548238	-	121	33240030	-	Pro0579	-	hypothetical protein
580	 40.30	0	548286..549218	-	310	33240031	rpoD	Pro0580	-	putative type II alternative sigma factor, sigma70 family
581	 35.40	0	549417..549899	+	160	33240032	-	Pro0581	-	hypothetical protein
582	 36.86	0	549957..550637	-	226	33240033	hisI	Pro0582	-	phosphoribosyl-AMP cyclohydrolase
583	 35.60	0	550708..551193	+	161	33240034	-	Pro0583	-	6-pyruvoyl-tetrahydropterin synthase
584	 40.68	0	551225..552790	-	521	33240035	-	Pro0584	-	putative carotenoid isomerase
585	 38.31	0	552787..554193	-	468	33240036	gid	Pro0585	-	tRNA (uracil-5-)-methyltransferase Gid
586	 39.02	0	554236..554358	-	40	33240037	pbsY	Pro0586	-	photosystem II protein Y
587	 35.09	0	554663..555004	+	113	33240038	-	Pro0587	-	hypothetical protein
588	 38.30	0	555342..555683	+	113	33240039	-	Pro0588	-	hypothetical protein
589	 36.96	0	555785..556087	+	100	33240040	-	Pro0589	-	hypothetical protein
590	 36.67	0	556189..556368	-	59	33240041	rpsU	Pro0590	-	30S ribosomal protein S21
591	 39.61	0	556786..557040	-	84	33240042	-	Pro0591	-	hypothetical protein
592	 33.81	0	557128..557337	+	69	33240043	-	Pro0592	-	hypothetical protein
593	 36.18	0	557401..557751	+	116	33240044	-	Pro0593	-	hypothetical protein
594	 31.91	-1	557760..558110	-	116	33240045	-	Pro0594	-	hypothetical protein
595	 36.87	0	558478..558675	-	65	33240046	-	Pro0595	-	hypothetical protein
596	 33.45	0	558880..559701	-	273	33240047	pstB	Pro0596	-	phosphate ABC transporter ATP-binding protein
597	 36.94	0	559722..560636	-	304	33240048	pstA	Pro0597	-	phosphate ABC transporter phosphate-binding protein
598	 37.12	0	560650..561600	-	316	33240049	pstC	Pro0598	-	phosphate ABC transporter permease
599	 37.21	0	561803..561931	-	42	33240050	-	Pro0599	-	hypothetical protein
600	 35.63	0	562473..562646	+	57	33240051	-	Pro0600	-	hypothetical protein
601	 38.49	0	562693..563157	+	154	33240052	-	Pro0601	-	hypothetical protein
602	 37.22	0	563477..563785	+	102	33240053	-	Pro0602	-	hypothetical protein
603	 30.33	-1	564321..564986	-	221	33240054	-	Pro0604	-	hypothetical protein
604	 39.88	0	565292..565459	+	55	33240055	-	Pro0605	-	hypothetical protein
605	 35.47	0	565465..566025	+	186	33240056	-	Pro0606	-	hypothetical protein
606	 37.13	0	566030..569587	+	1185	33240057	-	Pro0607	-	superfamily I DNA/RNA helicase
607	 31.37	-1	569926..570129	-	67	33240058	-	Pro0608	-	hypothetical protein
608	 38.12	0	570126..570731	-	201	33240059	-	Pro0609	-	hypothetical protein
609	 32.18	-1	571124..571642	+	172	33240060	-	Pro0610	-	hypothetical protein
610	 37.16	0	571662..571844	-	60	33240061	-	Pro0611	-	hypothetical protein
611	 36.01	0	571900..573318	-	472	33240062	-	Pro0612	-	retron-type reverse transcriptase
612	 37.59	0	573320..574963	-	547	33240063	-	Pro0613	-	hypothetical protein
613	 30.72	-1	574963..577755	-	930	33240064	-	Pro0614	-	hypothetical protein
614	 37.23	0	578131..579900	-	589	33240065	-	Pro0615	-	AbrB family trancriptional regulator
615	 34.92	0	580239..583571	-	1110	33240066	-	Pro0616	-	AbrB family trancriptional regulator
616	 34.90	0	584182..584373	+	63	33240067	-	Pro0617	-	hypothetical protein
617	 42.86	+1	584412..584621	+	69	33240068	-	Pro0618	-	hypothetical protein
618	 37.56	0	584688..584900	+	70	33240069	-	Pro0619	-	hypothetical protein
619	 40.51	0	584981..585217	+	78	33240070	-	Pro0620	-	hypothetical protein
620	 43.45	+1	585381..585884	-	167	33240071	-	Pro0621	-	hypothetical protein
621	 37.04	0	586080..586268	-	62	33240072	-	Pro0622	-	hypothetical protein
622	 43.26	+1	586261..586542	-	93	33240073	-	Pro0623	-	hypothetical protein
623	 37.65	0	586717..586878	+	53	33240074	-	Pro0624	-	hypothetical protein
624	 38.13	0	586958..587416	+	152	33240075	-	Pro0625	-	hypothetical protein
625	 40.45	0	587418..587993	+	191	33240076	-	Pro0626	-	hypothetical protein
626	 37.27	0	587984..588313	+	109	33240077	-	Pro0627	-	hypothetical protein
627	 35.53	0	588602..589783	-	393	33240078	-	Pro0628	-	hypothetical protein
628	 36.29	0	589776..591839	-	687	33240079	-	Pro0629	-	DNA helicase, restriction/modification system component, ortholog of BS_yeeB
629	 36.21	0	591847..594594	-	915	33240080	-	Pro0630	-	Type II restriction enzyme, methylase subunit
630	 41.29	+1	594914..595705	+	263	33240081	-	Pro0631	-	hypothetical protein
631	 37.47	0	595742..596104	+	120	33240082	-	Pro0632	-	hypothetical protein
632	 39.20	0	596166..596642	+	158	33240083	-	Pro0633	-	Zn-ribbon protein
633	 45.63	+2	596643..597008	-	121	33240084	-	Pro0634	-	hypothetical protein
634	 40.90	0	597305..597727	+	140	33240085	-	Pro0635	-	hypothetical protein
635	 31.88	-1	597918..598535	-	205	33240086	-	Pro0636	-	hypothetical protein
636	 40.00	0	599096..599215	+	39	33240087	-	Pro0637	-	hypothetical protein
637	 36.02	0	599278..599463	+	61	33240088	-	Pro0638	-	hypothetical protein
638	 44.17	+1	599677..599916	-	79	33240089	-	Pro0639	-	hypothetical protein
639	 42.08	+1	600113..600295	+	60	33240090	-	Pro0640	-	hypothetical protein
640	 35.24	0	600609..601028	+	139	33240091	-	Pro0641	-	hypothetical protein
641	 37.90	0	601045..601263	-	72	33240092	-	Pro0642	-	hypothetical protein
642	 39.33	0	601603..602019	+	138	33240093	-	Pro0643	-	hypothetical protein
643	 39.23	0	602429..602767	-	112	33240094	iscA	Pro0644	-	hypothetical protein
644	 32.26	-1	602932..603117	-	61	33240095	-	Pro0645	-	hypothetical protein
37.01	MEAN

3.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.