IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
485	 36.70	0	461662..462285	+	207	33239936	-	Pro0485	-	hypothetical protein
486	 38.06	0	462410..463636	+	408	33239937	-	Pro0486	-	hypothetical protein
487	 32.52	-1	463633..464613	+	326	33239938	-	Pro0487	-	hypothetical protein
488	 37.90	0	464674..466206	-	510	33239939	thiP	Pro0488	-	putative iron ABC transporter
489	 33.52	0	466199..467275	-	358	33239940	-	Pro0489	-	G3E family GTPase
490	 32.65	-1	467312..467602	-	96	33239941	-	Pro0490	-	pterin-4a-carbinolamine dehydratase
491	 32.44	-1	467660..468220	-	186	33239942	-	Pro0491	-	hypothetical protein
492	 40.21	0	468584..470125	+	513	33239943	-	Pro0492	-	Zn-dependent carboxypeptidase
493	 37.93	0	470152..470739	+	195	33239944	ppa	Pro0493	-	putative inorganic pyrophosphatase
494	 41.14	+1	470762..471709	-	315	33239945	hemC	Pro0494	-	porphobilinogen deaminase
495	 38.57	0	471863..473179	-	438	33239946	rpoD	Pro0495	-	RNA polymerase sigma factor RpoD
496	 43.86	+1	473310..473480	+	56	33239947	-	Pro0496	-	hypothetical protein
497	 41.92	+1	473544..475802	+	752	33239948	priA	Pro0497	-	primosomal protein N'
498	 34.15	0	475827..476927	-	366	33239949	-	Pro0498	-	hypothetical protein
499	 40.87	0	476931..477845	-	304	33239950	argB	Pro0499	-	acetylglutamate kinase
500	 37.32	0	477849..478400	-	183	33239951	-	Pro0500	-	hypothetical protein
501	 39.78	0	478452..478637	+	61	33239952	-	Pro0501	-	hypothetical protein
502	 41.83	+1	478656..479114	-	152	33239953	ssb	Pro0502	-	single-stranded DNA-binding protein
503	 40.75	0	479143..479937	+	264	33239954	cobK	Pro0503	-	precorrin-6x reductase
504	 28.79	-2	479985..480314	+	109	33239955	cutA	Pro0504	-	hypothetical protein
505	 35.53	0	480311..481312	-	333	33239956	rbsK	Pro0505	-	ribokinase family sugar kinase
506	 40.64	0	481323..482636	-	437	33239957	purA	Pro0506	-	adenylosuccinate synthetase
507	 37.24	0	482726..483160	-	144	33239958	psb27	Pro0507	-	putative photosystem II reaction center Psb27 protein
508	 37.20	0	483185..484996	-	603	33239959	proS	Pro0508	-	prolyl-tRNA synthetase
509	 35.21	0	485140..485565	+	141	33239960	-	Pro0509	-	putative helix-turn-helix domain of resolvase
510	 39.92	0	485907..486437	+	176	33239961	ppa	Pro0510	-	inorganic pyrophosphatase
511	 29.54	-1	486486..486854	+	122	33239962	arsC	Pro0511	-	arsenate reductase related protein
512	 31.06	-1	486820..488313	-	497	33239963	-	Pro0512	-	hypothetical protein
513	 37.37	0	488450..489118	+	222	33239964	lepB	Pro0513	-	Signal peptidase I
514	 38.65	0	489111..490370	-	419	33239965	pyrC	Pro0514	-	dihydroorotase
515	 38.45	0	490376..491704	-	442	33239966	gpmB	Pro0515	-	putative alpha-ribazole-5'-P phosphatase
516	 38.04	0	491811..493169	+	452	33239967	-	Pro0516	-	metal-dependent membrane protease
517	 36.11	0	493254..493721	+	155	33239968	-	Pro0517	-	hypothetical protein
518	 39.10	0	493727..495529	+	600	33239969	ftsI	Pro0518	-	putative peptidoglycan synthetase (pbp transpeptidase domain)
519	 35.02	0	495609..496616	+	335	33239970	tal	Pro0519	-	transaldolase B
520	 38.30	0	496685..497812	-	375	33239971	fixC	Pro0520	-	NAD binding site
521	 34.79	0	497809..498357	-	182	33239972	frr	Pro0521	-	ribosome recycling factor
522	 39.64	0	498408..499121	-	237	33239973	pyrH	Pro0522	-	uridylate kinase
523	 36.22	0	499346..500038	-	230	33239974	ctuR	Pro0523	-	ATP:corrinoid adenosyltransferase
524	 35.23	0	500108..501268	-	386	33239975	-	Pro0524	-	XisA-like site specific recombinase
525	 37.41	0	501339..502514	+	391	33239976	hemH	Pro0525	-	ferrochelatase
526	 39.49	0	502652..504406	+	584	33239977	ilvB	Pro0526	-	acetolactate synthase 3 catalytic subunit
527	 32.79	-1	504447..504812	+	121	33239978	-	Pro0527	-	thermonuclease-like protein
528	 29.78	-1	504836..505624	-	262	33239979	-	Pro0528	-	hypothetical protein
529	 39.26	0	505639..506532	-	297	33239980	-	Pro0529	-	hypothetical protein
530	 40.99	0	506532..507785	-	417	33239981	rpsA	Pro0530	-	ribosomal protein S1
531	 40.05	0	507847..508680	+	277	33239982	-	Pro0531	-	creatininase
532	 36.41	0	508768..509481	+	237	33239983	-	Pro0532	-	hypothetical protein
533	 41.19	+1	509626..510669	+	347	33239984	-	Pro0533	-	dehydrogenase
534	 42.02	+1	510701..511690	+	329	33239985	accA	Pro0534	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
535	 40.82	0	511717..512424	+	235	33239986	fabG	Pro0535	-	short chain dehydrogenase
536	 33.96	0	512433..512591	+	52	33239987	-	Pro0536	-	hypothetical protein
537	 36.61	0	512610..513188	+	192	33239988	folE	Pro0537	-	GTP cyclohydrolase I
538	 36.21	0	513192..513851	-	219	33239989	trpF	Pro0538	-	phosphoribosylanthranilate isomerase
539	 36.49	0	513931..515196	+	421	33239990	spoIVFB	Pro0539	-	S2P family protease
540	 37.49	0	515103..515945	-	280	33239991	lplA	Pro0540	-	lipoate-protein ligase A
541	 40.00	0	516085..516189	+	34	33239992	psaM	Pro0541	-	photosystem I reaction center subunit XII
542	 41.01	+1	516255..516671	+	138	33239993	-	Pro0542	-	hypothetical protein
543	 40.39	0	516744..517763	+	339	33239994	por	Pro0543	-	protochlorophyllide oxidoreductase
544	 40.18	0	517788..518678	-	296	33239995	chlL	Pro0544	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
545	 40.55	0	518864..520456	-	530	33239996	chlB	Pro0545	-	light-independent protochlorophyllide reductase subunit B
546	 40.57	0	520461..521717	-	418	33239997	chlN	Pro0546	-	light-independent protochlorophyllide reductase subunit N
547	 42.74	+1	521869..522240	-	123	33239998	-	Pro0547	-	hypothetical protein
548	 44.70	+1	522339..523112	+	257	33239999	-	Pro0548	-	hypothetical protein
549	 40.51	0	523130..523714	-	194	33240000	-	Pro0549	-	HAM1 family protein
550	 51.28	+2	524074..524385	+	103	33240001	ccmK/csoS1	Pro0550	-	carboxysome shell protein CsoS1
551	 45.36	+2	524454..525866	+	470	33240002	rbcL	Pro0551	-	ribulose bisophosphate carboxylase
552	 45.32	+2	525970..526311	+	113	33240003	rbcS	Pro0552	-	ribulose bisphosphate carboxylase, small chain
553	 43.42	+1	526414..528792	+	792	33240004	csoS2	Pro0553	-	carboxysome shell protein CsoS2
554	 39.01	0	528800..530332	+	510	33240005	csoS3	Pro0554	-	carboxysome shell protein CsoS3
555	 43.12	+1	530334..530609	+	91	33240006	-	Pro0555	-	putative carboxysome peptide A
556	 43.25	+1	530609..530860	+	83	33240007	-	Pro0556	-	putative carboxysome peptide B
557	 42.94	+1	530906..531415	+	169	33240008	ccmK/csoS1	Pro0557	-	carboxysome shell peptide, CsoS1
558	 35.98	0	531488..531751	+	87	33240009	-	Pro0558	-	pterin-4 alpha-carbinolamine dehydratase-like protein
559	 46.67	+2	531759..531983	-	74	33240010	-	Pro0559	-	hypothetical protein
560	 41.10	+1	532072..532470	-	132	33240011	tdcF	Pro0560	-	putative translation initiation inhibitor
561	 35.96	0	532524..533285	-	253	33240012	gloB	Pro0561	-	metallo-beta-lactamase superfamily hydrolase
562	 41.51	+1	533335..533982	+	215	33240013	hisG	Pro0562	-	ATP phosphoribosyltransferase catalytic subunit
563	 35.12	0	533987..535780	+	597	33240014	mdlB	Pro0563	-	multidrug ABC transporter
564	 38.67	0	535799..536341	+	180	33240015	wecD	Pro0564	-	acetyltransferase
565	 31.93	-1	536360..537070	-	236	33240016	wcaA	Pro0565	-	glycosyltransferase
566	 37.52	0	537058..537702	-	214	33240017	-	Pro0566	-	hypothetical protein
567	 39.39	0	537957..539342	+	461	33240018	dnaA	Pro0567	-	chromosomal replication initiation protein
568	 38.37	0	539358..540608	-	416	33240019	gst	Pro0568	-	glutaredoxin-like domain-containing protein
569	 34.65	0	540650..542011	+	453	33240020	gor	Pro0569	-	glutathione reductase
570	 36.94	0	542066..543145	-	359	33240021	ECM27	Pro0570	-	putative CaCA family sodium/calcium exchanger
571	 37.04	0	543290..544369	+	359	33240022	pyrC	Pro0571	-	dihydroorotase
572	 35.02	0	544847..545083	+	78	33240023	-	Pro0572	-	inorganic carbon transport protein, IctA
573	 33.93	0	545087..545419	+	110	33240024	-	Pro0573	-	hypothetical protein
574	 37.69	0	545500..546303	+	267	33240025	trpA	Pro0574	-	tryptophan synthase subunit alpha
575	 38.06	0	546430..546789	-	119	33240026	-	Pro0575	-	transciptional regulator
576	 32.59	-1	546894..547163	+	89	33240027	-	Pro0576	-	YciI-like protein
577	 34.37	0	547139..547525	-	128	33240028	cccA	Pro0577	-	cytochrome C
578	 37.46	0	547554..547868	-	104	33240029	-	Pro0578	-	hypothetical protein
579	 40.44	0	547873..548238	-	121	33240030	-	Pro0579	-	hypothetical protein
580	 40.30	0	548286..549218	-	310	33240031	rpoD	Pro0580	-	putative type II alternative sigma factor, sigma70 family
581	 35.40	0	549417..549899	+	160	33240032	-	Pro0581	-	hypothetical protein
582	 36.86	0	549957..550637	-	226	33240033	hisI	Pro0582	-	phosphoribosyl-AMP cyclohydrolase
583	 35.60	0	550708..551193	+	161	33240034	-	Pro0583	-	6-pyruvoyl-tetrahydropterin synthase
584	 40.68	0	551225..552790	-	521	33240035	-	Pro0584	-	putative carotenoid isomerase
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.