IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
419	 38.42	0	400642..402450	+	602	33239871	lepA	Pro0419	-	GTP-binding protein LepA
420	 40.57	0	402761..403630	+	289	33239872	dppC	Pro0420	-	ABC-type peptide transporter permease component
421	 41.59	+1	403671..404360	-	229	33239873	spoU	Pro0421	-	tRNA/rRNA methyltransferase (SpoU)
422	 41.38	+1	404610..405926	+	438	33239874	sun	Pro0422	-	tRNA and rRNA cytosine-C5-methylase
423	 38.39	0	405968..407785	-	605	33239875	mrcB	Pro0423	-	membrane carboxypeptidase (penicillin-binding protein)
424	 41.22	+1	407785..408735	-	316	33239876	chlG	Pro0424	-	bacteriochlorophyll/chlorophyll a synthase
425	 37.18	0	408747..408980	-	77	33239877	-	Pro0425	-	hypothetical protein
426	 39.92	0	409032..409805	+	257	33239878	hisF	Pro0426	-	imidazoleglycerol-phosphate synthase
427	 37.75	0	409919..410620	+	233	33239879	ubiE/menG	Pro0427	-	methylase
428	 35.98	0	410622..411149	-	175	33239880	-	Pro0428	-	hypothetical protein
429	 38.85	0	411284..412045	+	253	33239881	cirA	Pro0429	-	putative biotin--acetyl-CoA-carboxylase ligase
430	 40.09	0	412061..412741	-	226	33239882	salX	Pro0430	-	ABC transporter ATPase
431	 41.46	+1	412751..414325	-	524	33239883	ndhB	Pro0431	-	NAD(P)H-quinone oxidoreductase subunit 2
432	 39.33	0	414514..417132	+	872	33239884	topA	Pro0432	-	DNA topoisomerase I
433	 32.44	-1	417167..417613	+	148	33239885	-	Pro0433	-	hypothetical protein
434	 40.32	0	417619..418305	+	228	33239886	-	Pro0434	-	hypothetical protein
435	 39.28	0	418302..419495	+	397	33239887	cobT	Pro0435	-	hypothetical protein
436	 38.49	0	419524..420531	+	335	33239888	-	Pro0436	-	periplasmic binding protein
437	 37.82	0	420520..421656	-	378	33239889	-	Pro0437	-	aldo/keto reductase family oxidoreductase
438	 36.47	0	421781..422449	+	222	33239890	ribC	Pro0438	-	riboflavin synthase subunit alpha
439	 43.12	+1	422496..422873	-	125	33239891	-	Pro0439	-	transciptional regulator
440	 40.30	0	422970..423572	-	200	33239892	cyoC	Pro0440	-	cytochrome c oxidase, subunit III
441	 40.45	0	423572..425230	-	552	33239893	cyoB	Pro0441	-	cytochrome c oxidase, subunit I
442	 39.33	0	425227..426060	-	277	33239894	cyoA	Pro0442	-	putative cytochrome c oxidase, subunit 2
443	 38.13	0	426296..427234	+	312	33239895	ctaA	Pro0443	-	hypothetical protein
444	 44.01	+1	427227..428228	+	333	33239896	cyoE	Pro0444	-	putative protoheme IX farnesyltransferase
445	 38.17	0	428321..429334	+	337	33239897	ccmA	Pro0445	-	multidrug ABC transporter
446	 36.15	0	429394..430245	+	283	33239898	-	Pro0446	-	multidrug ABC transporter
447	 37.48	0	430263..430769	+	168	33239899	-	Pro0447	-	hypothetical protein
448	 40.31	0	430833..432524	-	563	33239900	groEL	Pro0448	-	chaperonin GroEL
449	 41.95	+1	432666..432839	+	57	33239901	-	Pro0449	-	hypothetical protein
450	 32.84	-1	433289..433489	+	66	33239902	-	Pro0450	-	hypothetical protein
451	 34.81	0	433920..434324	-	134	33239903	-	Pro0451	-	hypothetical protein
452	 40.24	0	434454..435206	-	250	33239904	fabG	Pro0452	-	short-chain dehydrogenase/reductase family protein
453	 40.09	0	435322..436002	+	226	33239905	ispD	Pro0453	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
454	 42.08	+1	435983..436885	-	300	33239906	ldcA	Pro0454	-	hypothetical protein
455	 37.82	0	436888..437778	-	296	33239907	ubiA	Pro0455	-	prenyltransferase
456	 38.52	0	437834..439510	+	558	33239908	gppA	Pro0456	-	putative exopolyphosphatase
457	 36.65	0	439715..440467	-	250	33239909	cobM	Pro0457	-	precorrin-4 methylase
458	 34.98	0	440464..441375	-	303	33239910	lgt	Pro0458	-	prolipoprotein diacylglyceryl transferase
459	 36.87	0	441398..442330	-	310	33239911	petA	Pro0459	-	apocytochrome f
460	 43.76	+1	442387..442923	-	178	33239912	petC	Pro0460	-	cytochrome b6-f complex iron-sulfur subunit
461	 37.76	0	443074..443367	+	97	110645912	-	Pro0461	-	hypothetical protein
462	 36.79	0	443330..444082	-	250	33239913	tatC	Pro0462	-	protein secretion component, Tat family
463	 38.94	0	444251..444553	-	100	33239914	-	Pro0463	-	hypothetical protein
464	 33.97	0	444591..446306	-	571	33239915	-	Pro0464	-	RNA-binding protein
465	 36.04	0	446371..446925	+	184	33239916	gmk	Pro0465	-	guanylate kinase
466	 34.07	0	446939..447073	-	44	33239917	psaJ	Pro0466	-	photosystem I reaction center subunit IX
467	 43.30	+1	447133..447684	-	183	33239918	psaF	Pro0467	-	photosystem I PsaF protein (subunit III)
468	 39.87	0	447763..448833	+	356	33239919	QRI7	Pro0468	-	metal-dependent protease with chaperone activity
469	 33.88	0	448872..449054	+	60	33239920	hli9	Pro0469	-	high light inducible protein hli9
470	 42.52	+1	449249..450445	+	398	33239921	nhaP	Pro0470	-	putative Na+/H+ antiporter, CPA1 family
471	 36.69	0	450465..451895	-	476	33239922	gltX	Pro0471	-	glutamyl-tRNA synthetase
472	 45.50	+2	452157..452345	-	62	33239923	-	Pro0472	-	hypothetical protein
473	 43.89	+1	452517..452999	-	160	33239924	rplS	Pro0473	-	50S ribosomal protein L19
474	 38.25	0	453066..453248	+	60	33239925	-	Pro0474	-	hypothetical protein
475	 38.11	0	453442..454278	+	278	33239926	map	Pro0475	-	methionine aminopeptidase
476	 33.73	0	454301..455062	-	253	33239927	fabG	Pro0476	-	short chain dehydrogenase
477	 39.59	0	455240..456310	+	356	33239928	pta	Pro0477	-	phosphotransacetylase domain-containing protein
478	 39.69	0	456362..456880	+	172	33239929	-	Pro0478	-	hypothetical protein
479	 35.94	0	456999..457496	+	165	33239930	-	Pro0479	-	nucleotide-binding protein
480	 35.21	0	457554..457766	+	70	33239931	-	Pro0480	-	hypothetical protein
481	 38.52	0	457853..458662	+	269	33239932	hflC	Pro0481	-	Band 7 protein
482	 44.32	+1	458766..460067	-	433	33239933	hemL	Pro0482	-	glutamate-1-semialdehyde aminotransferase
483	 37.18	0	460386..461216	-	276	33239934	xthA	Pro0483	-	exonuclease III
484	 30.58	-1	461279..461605	+	108	33239935	-	Pro0484	-	hypothetical protein
485	 36.70	0	461662..462285	+	207	33239936	-	Pro0485	-	hypothetical protein
486	 38.06	0	462410..463636	+	408	33239937	-	Pro0486	-	hypothetical protein
487	 32.52	-1	463633..464613	+	326	33239938	-	Pro0487	-	hypothetical protein
488	 37.90	0	464674..466206	-	510	33239939	thiP	Pro0488	-	putative iron ABC transporter
489	 33.52	0	466199..467275	-	358	33239940	-	Pro0489	-	G3E family GTPase
490	 32.65	-1	467312..467602	-	96	33239941	-	Pro0490	-	pterin-4a-carbinolamine dehydratase
491	 32.44	-1	467660..468220	-	186	33239942	-	Pro0491	-	hypothetical protein
492	 40.21	0	468584..470125	+	513	33239943	-	Pro0492	-	Zn-dependent carboxypeptidase
493	 37.93	0	470152..470739	+	195	33239944	ppa	Pro0493	-	putative inorganic pyrophosphatase
494	 41.14	+1	470762..471709	-	315	33239945	hemC	Pro0494	-	porphobilinogen deaminase
495	 38.57	0	471863..473179	-	438	33239946	rpoD	Pro0495	-	RNA polymerase sigma factor RpoD
496	 43.86	+1	473310..473480	+	56	33239947	-	Pro0496	-	hypothetical protein
497	 41.92	+1	473544..475802	+	752	33239948	priA	Pro0497	-	primosomal protein N'
498	 34.15	0	475827..476927	-	366	33239949	-	Pro0498	-	hypothetical protein
499	 40.87	0	476931..477845	-	304	33239950	argB	Pro0499	-	acetylglutamate kinase
500	 37.32	0	477849..478400	-	183	33239951	-	Pro0500	-	hypothetical protein
501	 39.78	0	478452..478637	+	61	33239952	-	Pro0501	-	hypothetical protein
502	 41.83	+1	478656..479114	-	152	33239953	ssb	Pro0502	-	single-stranded DNA-binding protein
503	 40.75	0	479143..479937	+	264	33239954	cobK	Pro0503	-	precorrin-6x reductase
504	 28.79	-2	479985..480314	+	109	33239955	cutA	Pro0504	-	hypothetical protein
505	 35.53	0	480311..481312	-	333	33239956	rbsK	Pro0505	-	ribokinase family sugar kinase
506	 40.64	0	481323..482636	-	437	33239957	purA	Pro0506	-	adenylosuccinate synthetase
507	 37.24	0	482726..483160	-	144	33239958	psb27	Pro0507	-	putative photosystem II reaction center Psb27 protein
508	 37.20	0	483185..484996	-	603	33239959	proS	Pro0508	-	prolyl-tRNA synthetase
509	 35.21	0	485140..485565	+	141	33239960	-	Pro0509	-	putative helix-turn-helix domain of resolvase
510	 39.92	0	485907..486437	+	176	33239961	ppa	Pro0510	-	inorganic pyrophosphatase
511	 29.54	-1	486486..486854	+	122	33239962	arsC	Pro0511	-	arsenate reductase related protein
512	 31.06	-1	486820..488313	-	497	33239963	-	Pro0512	-	hypothetical protein
513	 37.37	0	488450..489118	+	222	33239964	lepB	Pro0513	-	Signal peptidase I
514	 38.65	0	489111..490370	-	419	33239965	pyrC	Pro0514	-	dihydroorotase
515	 38.45	0	490376..491704	-	442	33239966	gpmB	Pro0515	-	putative alpha-ribazole-5'-P phosphatase
516	 38.04	0	491811..493169	+	452	33239967	-	Pro0516	-	metal-dependent membrane protease
517	 36.11	0	493254..493721	+	155	33239968	-	Pro0517	-	hypothetical protein
518	 39.10	0	493727..495529	+	600	33239969	ftsI	Pro0518	-	putative peptidoglycan synthetase (pbp transpeptidase domain)
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.