IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
374	 35.37	0	361850..363223	-	457	33239826	-	Pro0374	-	NAD-dependent aldehyde dehydrogenase
375	 33.85	0	363268..363654	-	128	33239827	-	Pro0375	-	hypothetical protein
376	 37.04	0	363741..364982	-	413	33239828	-	Pro0376	-	flavoprotein
377	 27.27	-2	364990..365121	+	43	33239829	-	Pro0377	-	hypothetical protein
378	 30.83	-1	365281..366000	+	239	33239830	-	Pro0378	-	hypothetical protein
379	 43.17	+1	366104..366286	-	60	33239831	rub/hoxR	Pro0379	-	rubredoxin
380	 32.18	-1	366770..367723	+	317	33239832	wcaA	Pro0380	-	glycosyltransferase
381	 32.91	-1	367765..369186	+	473	33239833	-	Pro0381	-	hypothetical protein
382	 27.78	-2	369194..369571	-	125	33239834	-	Pro0382	-	hypothetical protein
383	 28.41	-2	369606..369950	-	114	33239835	-	Pro0383	-	hypothetical protein
384	 39.78	0	370779..371228	+	149	33239836	aroQ	Pro0384	-	3-dehydroquinate dehydratase
385	 37.24	0	371225..371839	+	204	33239837	miaE	Pro0385	-	hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA
386	 32.57	-1	371843..372628	+	261	33239838	cobF	Pro0386	-	precorrin-2 methylase
387	 39.41	0	372703..373179	+	158	33239839	-	Pro0387	-	hypothetical protein
388	 40.99	0	373321..374691	+	456	33239840	engA	Pro0388	-	GTP-binding protein EngA
389	 35.62	0	374696..375613	+	305	33239841	cbiQ	Pro0389	-	cobalt ABC transporter permease
390	 40.29	0	375745..376017	+	90	33239842	-	Pro0390	-	hypothetical protein
391	 37.50	0	376037..376660	+	207	33239843	-	Pro0391	-	TIM-barrel fold family protein
392	 43.16	+1	376833..377402	+	189	33239844	-	Pro0392	-	hypothetical protein
393	 41.18	+1	377412..378239	+	275	33239845	proC	Pro0393	-	pyrroline-5-carboxylate reductase
394	 37.91	0	378246..379403	-	385	33239846	rfaG	Pro0394	-	putative glycosyl transferase, group 1
395	 40.21	0	379491..380261	-	256	33239847	recO	Pro0395	-	putative recombination protein O
396	 36.52	0	380258..380947	-	229	33239848	deoC	Pro0396	-	deoxyribose-phosphate aldolase
397	 39.63	0	380947..381534	-	195	33239849	-	Pro0397	-	ribosome-associated protein Y
398	 37.04	0	381560..382234	+	224	33239850	lipB	Pro0398	-	lipoate-protein ligase B
399	 39.60	0	382270..384297	+	675	33239851	fAA1	Pro0399	-	putative long-chain-fatty-acid--CoA ligase
400	 39.64	0	384365..384808	+	147	33239852	-	Pro0400	-	hypothetical protein
401	 42.95	+1	384875..386257	+	460	33239853	aceF	Pro0401	-	branched-chain alpha-keto acid dehydrogenase subunit E2
402	 41.15	+1	386308..387420	+	370	33239854	queA	Pro0402	-	S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
403	 42.15	+1	387417..388403	-	328	33239855	cysK	Pro0403	-	O-acetylserine (thiol)-lyase A
404	 39.92	0	388492..389964	-	490	33239856	metC/metB	Pro0404	-	putative cystathionine gamma-synthase
405	 39.15	0	389961..391130	-	389	33239857	metC/metB	Pro0405	-	putative cystathionine gamma-synthase
406	 30.78	-1	391296..392276	-	326	33239858	-	Pro0406	-	hypothetical protein
407	 34.57	0	392552..392794	+	80	33239859	-	Pro0407	-	hypothetical protein
408	 39.60	0	392945..393247	-	100	33239860	-	Pro0408	-	hypothetical protein
409	 44.66	+1	393478..394086	-	202	33239861	rpsD	Pro0409	-	30S ribosomal protein S4
410	 41.25	+1	394190..394429	+	79	33239862	-	Pro0410	-	hypothetical protein
411	 36.22	0	394426..394737	+	103	33239863	trxA	Pro0411	-	thioredoxin family protein
412	 40.54	0	394752..396263	+	503	33239864	murE	Pro0412	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
413	 39.78	0	396275..397468	-	397	33239865	csdB	Pro0413	-	putative L-cysteine/cystine lyase
414	 34.67	0	397549..397773	-	74	33239866	-	Pro0414	-	hypothetical protein
415	 34.52	0	398036..398203	-	55	33239867	-	Pro0415	-	hypothetical protein
416	 34.96	0	398503..398748	+	81	33239868	-	Pro0416	-	hypothetical protein
417	 39.43	0	398766..399011	-	81	33239869	-	Pro0417	-	NifU-like protein
418	 39.70	0	399080..400570	+	496	33239870	mqoA	Pro0418	-	malate:quinone oxidoreductase
419	 38.42	0	400642..402450	+	602	33239871	lepA	Pro0419	-	GTP-binding protein LepA
420	 40.57	0	402761..403630	+	289	33239872	dppC	Pro0420	-	ABC-type peptide transporter permease component
421	 41.59	+1	403671..404360	-	229	33239873	spoU	Pro0421	-	tRNA/rRNA methyltransferase (SpoU)
422	 41.38	+1	404610..405926	+	438	33239874	sun	Pro0422	-	tRNA and rRNA cytosine-C5-methylase
423	 38.39	0	405968..407785	-	605	33239875	mrcB	Pro0423	-	membrane carboxypeptidase (penicillin-binding protein)
424	 41.22	+1	407785..408735	-	316	33239876	chlG	Pro0424	-	bacteriochlorophyll/chlorophyll a synthase
425	 37.18	0	408747..408980	-	77	33239877	-	Pro0425	-	hypothetical protein
426	 39.92	0	409032..409805	+	257	33239878	hisF	Pro0426	-	imidazoleglycerol-phosphate synthase
427	 37.75	0	409919..410620	+	233	33239879	ubiE/menG	Pro0427	-	methylase
428	 35.98	0	410622..411149	-	175	33239880	-	Pro0428	-	hypothetical protein
429	 38.85	0	411284..412045	+	253	33239881	cirA	Pro0429	-	putative biotin--acetyl-CoA-carboxylase ligase
430	 40.09	0	412061..412741	-	226	33239882	salX	Pro0430	-	ABC transporter ATPase
431	 41.46	+1	412751..414325	-	524	33239883	ndhB	Pro0431	-	NAD(P)H-quinone oxidoreductase subunit 2
432	 39.33	0	414514..417132	+	872	33239884	topA	Pro0432	-	DNA topoisomerase I
433	 32.44	-1	417167..417613	+	148	33239885	-	Pro0433	-	hypothetical protein
434	 40.32	0	417619..418305	+	228	33239886	-	Pro0434	-	hypothetical protein
435	 39.28	0	418302..419495	+	397	33239887	cobT	Pro0435	-	hypothetical protein
436	 38.49	0	419524..420531	+	335	33239888	-	Pro0436	-	periplasmic binding protein
437	 37.82	0	420520..421656	-	378	33239889	-	Pro0437	-	aldo/keto reductase family oxidoreductase
438	 36.47	0	421781..422449	+	222	33239890	ribC	Pro0438	-	riboflavin synthase subunit alpha
439	 43.12	+1	422496..422873	-	125	33239891	-	Pro0439	-	transciptional regulator
440	 40.30	0	422970..423572	-	200	33239892	cyoC	Pro0440	-	cytochrome c oxidase, subunit III
441	 40.45	0	423572..425230	-	552	33239893	cyoB	Pro0441	-	cytochrome c oxidase, subunit I
442	 39.33	0	425227..426060	-	277	33239894	cyoA	Pro0442	-	putative cytochrome c oxidase, subunit 2
443	 38.13	0	426296..427234	+	312	33239895	ctaA	Pro0443	-	hypothetical protein
444	 44.01	+1	427227..428228	+	333	33239896	cyoE	Pro0444	-	putative protoheme IX farnesyltransferase
445	 38.17	0	428321..429334	+	337	33239897	ccmA	Pro0445	-	multidrug ABC transporter
446	 36.15	0	429394..430245	+	283	33239898	-	Pro0446	-	multidrug ABC transporter
447	 37.48	0	430263..430769	+	168	33239899	-	Pro0447	-	hypothetical protein
448	 40.31	0	430833..432524	-	563	33239900	groEL	Pro0448	-	chaperonin GroEL
449	 41.95	+1	432666..432839	+	57	33239901	-	Pro0449	-	hypothetical protein
450	 32.84	-1	433289..433489	+	66	33239902	-	Pro0450	-	hypothetical protein
451	 34.81	0	433920..434324	-	134	33239903	-	Pro0451	-	hypothetical protein
452	 40.24	0	434454..435206	-	250	33239904	fabG	Pro0452	-	short-chain dehydrogenase/reductase family protein
453	 40.09	0	435322..436002	+	226	33239905	ispD	Pro0453	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
454	 42.08	+1	435983..436885	-	300	33239906	ldcA	Pro0454	-	hypothetical protein
455	 37.82	0	436888..437778	-	296	33239907	ubiA	Pro0455	-	prenyltransferase
456	 38.52	0	437834..439510	+	558	33239908	gppA	Pro0456	-	putative exopolyphosphatase
457	 36.65	0	439715..440467	-	250	33239909	cobM	Pro0457	-	precorrin-4 methylase
458	 34.98	0	440464..441375	-	303	33239910	lgt	Pro0458	-	prolipoprotein diacylglyceryl transferase
459	 36.87	0	441398..442330	-	310	33239911	petA	Pro0459	-	apocytochrome f
460	 43.76	+1	442387..442923	-	178	33239912	petC	Pro0460	-	cytochrome b6-f complex iron-sulfur subunit
461	 37.76	0	443074..443367	+	97	110645912	-	Pro0461	-	hypothetical protein
462	 36.79	0	443330..444082	-	250	33239913	tatC	Pro0462	-	protein secretion component, Tat family
463	 38.94	0	444251..444553	-	100	33239914	-	Pro0463	-	hypothetical protein
464	 33.97	0	444591..446306	-	571	33239915	-	Pro0464	-	RNA-binding protein
465	 36.04	0	446371..446925	+	184	33239916	gmk	Pro0465	-	guanylate kinase
466	 34.07	0	446939..447073	-	44	33239917	psaJ	Pro0466	-	photosystem I reaction center subunit IX
467	 43.30	+1	447133..447684	-	183	33239918	psaF	Pro0467	-	photosystem I PsaF protein (subunit III)
468	 39.87	0	447763..448833	+	356	33239919	QRI7	Pro0468	-	metal-dependent protease with chaperone activity
469	 33.88	0	448872..449054	+	60	33239920	hli9	Pro0469	-	high light inducible protein hli9
470	 42.52	+1	449249..450445	+	398	33239921	nhaP	Pro0470	-	putative Na+/H+ antiporter, CPA1 family
471	 36.69	0	450465..451895	-	476	33239922	gltX	Pro0471	-	glutamyl-tRNA synthetase
472	 45.50	+2	452157..452345	-	62	33239923	-	Pro0472	-	hypothetical protein
473	 43.89	+1	452517..452999	-	160	33239924	rplS	Pro0473	-	50S ribosomal protein L19
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.