IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
325	 37.47	0	316580..316942	-	120	33239777	ndhC	Pro0325	-	NADH dehydrogenase subunit A
326	 37.96	0	317028..317459	+	143	33239778	-	Pro0326	-	putative rubredoxin
327	 40.10	0	317467..318486	+	339	33239779	-	Pro0327	-	Ycf48-like protein
328	 47.79	+2	318588..318836	+	82	33239780	psbE	Pro0328	-	cytochrome b559 subunit alpha
329	 47.62	+2	318840..318986	+	48	33239781	psbF	Pro0329	-	cytochrome b559 subunit beta
330	 36.67	0	319009..319128	+	39	33239782	psbL	Pro0330	-	photosystem II reaction center L
331	 46.97	+2	319143..319340	+	65	33239783	psbJ	Pro0331	-	photosystem II reaction center protein J
332	 39.89	0	319367..320311	-	314	33239784	pnp	Pro0332	-	purine nucleoside phosphorylase
333	 36.62	0	320315..322477	+	720	33239785	ndh	Pro0333	-	NADH dehydrogenase, FAD-containing subunit
334	 36.93	0	322503..323753	-	416	33239786	pcnB	Pro0334	-	tRNA nucleotidyltransferase/poly(A) polymerase
335	 37.09	0	323818..326241	-	807	33239787	uvrD	Pro0335	-	superfamily I DNA/RNA helicase
336	 32.85	-1	326319..326525	-	68	33239788	-	Pro0336	-	hypothetical protein
337	 37.34	0	326768..327316	+	182	33239789	cpeB	Pro0337	-	phycoerythrin class III beta chain CpeB
338	 39.96	0	327366..327833	+	155	33239790	cpeA	Pro0338	-	phycoerythrin class III alpha chain CpeA
339	 31.86	-1	327881..328489	+	202	33239791	cpeZ	Pro0339	-	bilin biosynthesis protein CpeZ
340	 37.57	0	328493..329389	-	298	33239792	mpeX	Pro0340	-	bilin biosynthesis protein PBS lyase MpeV/SpeZ subunit
341	 31.29	-1	329467..330786	+	439	33239793	cpeY	Pro0341	-	bilin biosynthesis protein CpeY
342	 29.42	-1	330805..331392	-	195	33239794	cpeT	Pro0342	-	CpeT-like protein
343	 34.80	0	331389..331934	-	181	33239795	cpeS	Pro0343	-	CpeS-like protein
344	 38.10	0	331924..332112	-	62	33239796	-	Pro0344	-	hypothetical protein
345	 34.32	0	332125..332937	-	270	33239797	ppeC	Pro0345	-	phycoerythrin class III gamma chain
346	 35.73	0	332950..334245	-	431	33239798	pucC	Pro0346	-	hypothetical protein
347	 32.03	-1	334411..334641	-	76	33239799	-	Pro0347	-	hypothetical protein
348	 38.97	0	335096..336319	-	407	33239800	xylB	Pro0348	-	sugar kinase
349	 40.79	0	336332..337564	-	410	33239801	metK	Pro0349	-	S-adenosylmethionine synthetase
350	 33.20	0	337609..338376	-	255	33239802	gph	Pro0350	-	HAD superfamily phosphatase
351	 38.68	0	338390..339493	-	367	33239803	rpsA	Pro0351	-	30S ribosomal protein S1
352	 36.29	0	339588..340061	-	157	33239804	-	Pro0352	-	transcriptional regulator NrdR
353	 42.71	+1	340260..340355	-	31	33239805	psbT	Pro0353	-	photosystem II reaction center protein T
354	 46.98	+2	340387..341940	-	517	33239806	psbB	Pro0354	-	photosystem II PsbB protein (CP47)
355	 39.87	0	341973..342125	+	50	33239807	-	Pro0355	-	hypothetical protein
356	 40.46	0	342154..342546	+	130	33239808	fdx	Pro0356	-	ferredoxin
357	 38.56	0	342693..342845	+	50	33239809	psbM	Pro0357	-	photosystem II protein M PsbM
358	 38.44	0	342930..343379	+	149	33239810	fcbC	Pro0358	-	thioesterase
359	 38.55	0	343380..344261	+	293	33239811	hemK	Pro0359	-	methylase of polypeptide chain release factor
360	 38.95	0	344287..344874	+	195	33239812	SUA5	Pro0360	-	putative translation factor (SUA5)
361	 29.17	-1	344882..345049	+	55	33239813	-	Pro0361	-	hypothetical protein
362	 38.01	0	345276..345596	-	106	33239814	minE	Pro0362	-	septum formation topological specificity factor
363	 41.91	+1	345602..346417	-	271	33239815	minD	Pro0363	-	putative septum site-determining protein MinD
364	 34.98	0	346556..347221	-	221	33239816	minC	Pro0364	-	septum formation inhibitor
365	 31.83	-1	347242..348504	-	420	33239817	-	Pro0365	-	HD superfamily phosphohydrolase
366	 37.46	0	348504..349883	-	459	33239818	prc	Pro0366	-	carboxyl-terminal protease
367	 42.16	+1	349948..350604	+	218	33239819	petB	Pro0367	-	cytochrome b6
368	 38.72	0	350685..351167	+	160	33239820	petD	Pro0368	-	cytochrome b6-f complex subunit IV
369	 38.93	0	351176..352621	-	481	33239821	-	Pro0369	-	putative neutral invertase-like protein
370	 35.80	0	358620..359471	-	283	33239822	nei	Pro0370	-	formamidopyrimidine-DNA glycosylase
371	 38.57	0	359478..359687	-	69	33239823	psaE	Pro0371	-	photosystem I reaction center subunit IV
372	 41.67	+1	359810..360853	+	347	33239824	-	Pro0372	-	hypothetical protein
373	 31.51	-1	360884..361759	-	291	33239825	-	Pro0373	-	LysM repeat-containing protein
374	 35.37	0	361850..363223	-	457	33239826	-	Pro0374	-	NAD-dependent aldehyde dehydrogenase
375	 33.85	0	363268..363654	-	128	33239827	-	Pro0375	-	hypothetical protein
376	 37.04	0	363741..364982	-	413	33239828	-	Pro0376	-	flavoprotein
377	 27.27	-2	364990..365121	+	43	33239829	-	Pro0377	-	hypothetical protein
378	 30.83	-1	365281..366000	+	239	33239830	-	Pro0378	-	hypothetical protein
379	 43.17	+1	366104..366286	-	60	33239831	rub/hoxR	Pro0379	-	rubredoxin
380	 32.18	-1	366770..367723	+	317	33239832	wcaA	Pro0380	-	glycosyltransferase
381	 32.91	-1	367765..369186	+	473	33239833	-	Pro0381	-	hypothetical protein
382	 27.78	-2	369194..369571	-	125	33239834	-	Pro0382	-	hypothetical protein
383	 28.41	-2	369606..369950	-	114	33239835	-	Pro0383	-	hypothetical protein
384	 39.78	0	370779..371228	+	149	33239836	aroQ	Pro0384	-	3-dehydroquinate dehydratase
385	 37.24	0	371225..371839	+	204	33239837	miaE	Pro0385	-	hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA
386	 32.57	-1	371843..372628	+	261	33239838	cobF	Pro0386	-	precorrin-2 methylase
387	 39.41	0	372703..373179	+	158	33239839	-	Pro0387	-	hypothetical protein
388	 40.99	0	373321..374691	+	456	33239840	engA	Pro0388	-	GTP-binding protein EngA
389	 35.62	0	374696..375613	+	305	33239841	cbiQ	Pro0389	-	cobalt ABC transporter permease
390	 40.29	0	375745..376017	+	90	33239842	-	Pro0390	-	hypothetical protein
391	 37.50	0	376037..376660	+	207	33239843	-	Pro0391	-	TIM-barrel fold family protein
392	 43.16	+1	376833..377402	+	189	33239844	-	Pro0392	-	hypothetical protein
393	 41.18	+1	377412..378239	+	275	33239845	proC	Pro0393	-	pyrroline-5-carboxylate reductase
394	 37.91	0	378246..379403	-	385	33239846	rfaG	Pro0394	-	putative glycosyl transferase, group 1
395	 40.21	0	379491..380261	-	256	33239847	recO	Pro0395	-	putative recombination protein O
396	 36.52	0	380258..380947	-	229	33239848	deoC	Pro0396	-	deoxyribose-phosphate aldolase
397	 39.63	0	380947..381534	-	195	33239849	-	Pro0397	-	ribosome-associated protein Y
398	 37.04	0	381560..382234	+	224	33239850	lipB	Pro0398	-	lipoate-protein ligase B
399	 39.60	0	382270..384297	+	675	33239851	fAA1	Pro0399	-	putative long-chain-fatty-acid--CoA ligase
400	 39.64	0	384365..384808	+	147	33239852	-	Pro0400	-	hypothetical protein
401	 42.95	+1	384875..386257	+	460	33239853	aceF	Pro0401	-	branched-chain alpha-keto acid dehydrogenase subunit E2
402	 41.15	+1	386308..387420	+	370	33239854	queA	Pro0402	-	S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
403	 42.15	+1	387417..388403	-	328	33239855	cysK	Pro0403	-	O-acetylserine (thiol)-lyase A
404	 39.92	0	388492..389964	-	490	33239856	metC/metB	Pro0404	-	putative cystathionine gamma-synthase
405	 39.15	0	389961..391130	-	389	33239857	metC/metB	Pro0405	-	putative cystathionine gamma-synthase
406	 30.78	-1	391296..392276	-	326	33239858	-	Pro0406	-	hypothetical protein
407	 34.57	0	392552..392794	+	80	33239859	-	Pro0407	-	hypothetical protein
408	 39.60	0	392945..393247	-	100	33239860	-	Pro0408	-	hypothetical protein
409	 44.66	+1	393478..394086	-	202	33239861	rpsD	Pro0409	-	30S ribosomal protein S4
410	 41.25	+1	394190..394429	+	79	33239862	-	Pro0410	-	hypothetical protein
411	 36.22	0	394426..394737	+	103	33239863	trxA	Pro0411	-	thioredoxin family protein
412	 40.54	0	394752..396263	+	503	33239864	murE	Pro0412	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
413	 39.78	0	396275..397468	-	397	33239865	csdB	Pro0413	-	putative L-cysteine/cystine lyase
414	 34.67	0	397549..397773	-	74	33239866	-	Pro0414	-	hypothetical protein
415	 34.52	0	398036..398203	-	55	33239867	-	Pro0415	-	hypothetical protein
416	 34.96	0	398503..398748	+	81	33239868	-	Pro0416	-	hypothetical protein
417	 39.43	0	398766..399011	-	81	33239869	-	Pro0417	-	NifU-like protein
418	 39.70	0	399080..400570	+	496	33239870	mqoA	Pro0418	-	malate:quinone oxidoreductase
419	 38.42	0	400642..402450	+	602	33239871	lepA	Pro0419	-	GTP-binding protein LepA
420	 40.57	0	402761..403630	+	289	33239872	dppC	Pro0420	-	ABC-type peptide transporter permease component
421	 41.59	+1	403671..404360	-	229	33239873	spoU	Pro0421	-	tRNA/rRNA methyltransferase (SpoU)
422	 41.38	+1	404610..405926	+	438	33239874	sun	Pro0422	-	tRNA and rRNA cytosine-C5-methylase
423	 38.39	0	405968..407785	-	605	33239875	mrcB	Pro0423	-	membrane carboxypeptidase (penicillin-binding protein)
424	 41.22	+1	407785..408735	-	316	33239876	chlG	Pro0424	-	bacteriochlorophyll/chlorophyll a synthase
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.