IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
280	 36.82	0	273876..274133	-	85	33239732	-	Pro0280	-	hypothetical protein
281	 37.24	0	274138..274752	-	204	33239733	pth	Pro0281	-	peptidyl-tRNA hydrolase
282	 36.47	0	274777..275031	-	84	33239734	tatA	Pro0282	-	Sec-independent protein secretion pathway component TatA
283	 41.18	+1	275064..275267	-	67	33239735	psbH	Pro0283	-	photosystem II reaction center protein H
284	 40.43	0	275354..275494	+	46	33239736	psbN	Pro0284	-	photosystem II reaction center protein N
285	 46.51	+2	275624..275752	+	42	33239737	psbI	Pro0285	-	photosystem II reaction center I protein I
286	 30.27	-1	275871..277928	+	685	33239738	-	Pro0286	-	hypothetical protein
287	 34.94	0	277964..278587	-	207	33239739	leuD	Pro0287	-	3-isopropylmalate dehydratase small subunit
288	 41.08	+1	278616..280022	-	468	33239740	leuC	Pro0288	-	isopropylmalate isomerase large subunit
289	 35.06	0	280047..281318	-	423	33239741	cinA	Pro0289	-	CinA-like domain-containing protein
290	 38.25	0	281325..282584	-	419	33239742	glyA	Pro0290	-	serine hydroxymethyltransferase
291	 39.53	0	282855..283112	+	85	33239743	-	Pro0291	-	hypothetical protein
292	 39.18	0	283143..283433	+	96	33239744	-	Pro0292	-	hypothetical protein
293	 31.97	-1	283501..285117	-	538	33239745	mviN	Pro0293	-	hypothetical protein
294	 39.15	0	285201..285956	+	251	33239746	sfsA	Pro0294	-	putative sugar fermentation stimulation protein
295	 45.26	+2	286257..287765	+	502	33239747	amtB	Pro0295	-	ammonium transporter
296	 37.27	0	287863..289080	+	405	33239748	lytB	Pro0296	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
297	 39.54	0	289209..289772	+	187	33239749	-	Pro0297	-	hypothetical protein
298	 36.42	0	289813..291369	-	518	33239750	purH	Pro0298	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
299	 35.64	0	291429..292034	+	201	33239751	-	Pro0299	-	esterase
300	 41.19	+1	292047..292415	-	122	33239752	-	Pro0300	-	hypothetical protein
301	 38.61	0	292769..293887	+	372	33239753	caeS	Pro0301	-	two-component sensor histidine kinase
302	 35.00	0	293868..294647	-	259	33239754	cobS	Pro0302	-	cobalamin-5-phosphate synthase
303	 40.21	0	294742..295860	+	372	33239755	tgt	Pro0303	-	queuine/archaeosine tRNA-ribosyltransferase
304	 47.92	+2	295894..296037	+	47	33239756	psbK	Pro0304	-	photosystem II reaction center protein K
305	 40.40	0	296140..297144	-	334	33239757	mviM	Pro0305	-	putative oxidoreductase
306	 36.44	0	297180..298466	-	428	33239758	tlyC	Pro0306	-	hypothetical protein
307	 40.24	0	298667..299245	+	192	33239759	pyrE	Pro0307	-	orotate phosphoribosyltransferase
308	 32.50	-1	299247..300089	+	280	33239760	gcvT	Pro0308	-	aminomethyltransferase related to glycine cleavage protein T
309	 34.49	0	300107..301570	-	487	33239761	-	Pro0309	-	DNA repair protein
310	 38.25	0	301635..303077	+	480	33239762	manB	Pro0310	-	phosphomannomutase
311	 37.81	0	303074..303676	+	200	33239763	-	Pro0311	-	xanthosine triphosphate pyrophosphatase
312	 36.96	0	303715..305205	-	496	33239764	-	Pro0312	-	retinal pigment epithelial membrane protein
313	 39.49	0	305267..305899	-	210	33239765	hisB	Pro0313	-	imidazoleglycerol-phosphate dehydratase
314	 41.63	+1	305936..306718	-	260	33239766	fabI	Pro0314	-	enoyl-(acyl carrier protein) reductase
315	 36.55	0	306829..307449	+	206	33239767	trxA	Pro0315	-	thioredoxin family protein
316	 37.12	0	307512..308699	+	395	33239768	wecE	Pro0316	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
317	 40.82	0	308737..309297	-	186	33239769	-	Pro0317	-	NUDIX/MutT family pyrophosphohydrolase
318	 35.22	0	309369..309950	-	193	33239770	folK	Pro0318	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
319	 42.89	+1	309998..312121	+	707	33239771	chlD	Pro0319	-	protoporphyrin IX magnesium chelatase subunit ChlD
320	 33.33	0	312130..312975	-	281	33239772	ttg2C	Pro0320	-	putative ABC transporter
321	 37.02	0	312981..313793	-	270	33239773	ttg2A	Pro0321	-	ABC transporter ATP-binding protein
322	 39.65	0	313970..315298	+	442	33239774	-	Pro0322	-	hypothetical protein
323	 33.52	0	315299..315844	-	181	33239775	ndhJ	Pro0323	-	NADH dehydrogenase subunit J
324	 37.04	0	315847..316575	-	242	33239776	ndhK	Pro0324	-	NADH dehydrogenase subunit B
325	 37.47	0	316580..316942	-	120	33239777	ndhC	Pro0325	-	NADH dehydrogenase subunit A
326	 37.96	0	317028..317459	+	143	33239778	-	Pro0326	-	putative rubredoxin
327	 40.10	0	317467..318486	+	339	33239779	-	Pro0327	-	Ycf48-like protein
328	 47.79	+2	318588..318836	+	82	33239780	psbE	Pro0328	-	cytochrome b559 subunit alpha
329	 47.62	+2	318840..318986	+	48	33239781	psbF	Pro0329	-	cytochrome b559 subunit beta
330	 36.67	0	319009..319128	+	39	33239782	psbL	Pro0330	-	photosystem II reaction center L
331	 46.97	+2	319143..319340	+	65	33239783	psbJ	Pro0331	-	photosystem II reaction center protein J
332	 39.89	0	319367..320311	-	314	33239784	pnp	Pro0332	-	purine nucleoside phosphorylase
333	 36.62	0	320315..322477	+	720	33239785	ndh	Pro0333	-	NADH dehydrogenase, FAD-containing subunit
334	 36.93	0	322503..323753	-	416	33239786	pcnB	Pro0334	-	tRNA nucleotidyltransferase/poly(A) polymerase
335	 37.09	0	323818..326241	-	807	33239787	uvrD	Pro0335	-	superfamily I DNA/RNA helicase
336	 32.85	-1	326319..326525	-	68	33239788	-	Pro0336	-	hypothetical protein
337	 37.34	0	326768..327316	+	182	33239789	cpeB	Pro0337	-	phycoerythrin class III beta chain CpeB
338	 39.96	0	327366..327833	+	155	33239790	cpeA	Pro0338	-	phycoerythrin class III alpha chain CpeA
339	 31.86	-1	327881..328489	+	202	33239791	cpeZ	Pro0339	-	bilin biosynthesis protein CpeZ
340	 37.57	0	328493..329389	-	298	33239792	mpeX	Pro0340	-	bilin biosynthesis protein PBS lyase MpeV/SpeZ subunit
341	 31.29	-1	329467..330786	+	439	33239793	cpeY	Pro0341	-	bilin biosynthesis protein CpeY
342	 29.42	-1	330805..331392	-	195	33239794	cpeT	Pro0342	-	CpeT-like protein
343	 34.80	0	331389..331934	-	181	33239795	cpeS	Pro0343	-	CpeS-like protein
344	 38.10	0	331924..332112	-	62	33239796	-	Pro0344	-	hypothetical protein
345	 34.32	0	332125..332937	-	270	33239797	ppeC	Pro0345	-	phycoerythrin class III gamma chain
346	 35.73	0	332950..334245	-	431	33239798	pucC	Pro0346	-	hypothetical protein
347	 32.03	-1	334411..334641	-	76	33239799	-	Pro0347	-	hypothetical protein
348	 38.97	0	335096..336319	-	407	33239800	xylB	Pro0348	-	sugar kinase
349	 40.79	0	336332..337564	-	410	33239801	metK	Pro0349	-	S-adenosylmethionine synthetase
350	 33.20	0	337609..338376	-	255	33239802	gph	Pro0350	-	HAD superfamily phosphatase
351	 38.68	0	338390..339493	-	367	33239803	rpsA	Pro0351	-	30S ribosomal protein S1
352	 36.29	0	339588..340061	-	157	33239804	-	Pro0352	-	transcriptional regulator NrdR
353	 42.71	+1	340260..340355	-	31	33239805	psbT	Pro0353	-	photosystem II reaction center protein T
354	 46.98	+2	340387..341940	-	517	33239806	psbB	Pro0354	-	photosystem II PsbB protein (CP47)
355	 39.87	0	341973..342125	+	50	33239807	-	Pro0355	-	hypothetical protein
356	 40.46	0	342154..342546	+	130	33239808	fdx	Pro0356	-	ferredoxin
357	 38.56	0	342693..342845	+	50	33239809	psbM	Pro0357	-	photosystem II protein M PsbM
358	 38.44	0	342930..343379	+	149	33239810	fcbC	Pro0358	-	thioesterase
359	 38.55	0	343380..344261	+	293	33239811	hemK	Pro0359	-	methylase of polypeptide chain release factor
360	 38.95	0	344287..344874	+	195	33239812	SUA5	Pro0360	-	putative translation factor (SUA5)
361	 29.17	-1	344882..345049	+	55	33239813	-	Pro0361	-	hypothetical protein
362	 38.01	0	345276..345596	-	106	33239814	minE	Pro0362	-	septum formation topological specificity factor
363	 41.91	+1	345602..346417	-	271	33239815	minD	Pro0363	-	putative septum site-determining protein MinD
364	 34.98	0	346556..347221	-	221	33239816	minC	Pro0364	-	septum formation inhibitor
365	 31.83	-1	347242..348504	-	420	33239817	-	Pro0365	-	HD superfamily phosphohydrolase
366	 37.46	0	348504..349883	-	459	33239818	prc	Pro0366	-	carboxyl-terminal protease
367	 42.16	+1	349948..350604	+	218	33239819	petB	Pro0367	-	cytochrome b6
368	 38.72	0	350685..351167	+	160	33239820	petD	Pro0368	-	cytochrome b6-f complex subunit IV
369	 38.93	0	351176..352621	-	481	33239821	-	Pro0369	-	putative neutral invertase-like protein
370	 35.80	0	358620..359471	-	283	33239822	nei	Pro0370	-	formamidopyrimidine-DNA glycosylase
371	 38.57	0	359478..359687	-	69	33239823	psaE	Pro0371	-	photosystem I reaction center subunit IV
372	 41.67	+1	359810..360853	+	347	33239824	-	Pro0372	-	hypothetical protein
373	 31.51	-1	360884..361759	-	291	33239825	-	Pro0373	-	LysM repeat-containing protein
374	 35.37	0	361850..363223	-	457	33239826	-	Pro0374	-	NAD-dependent aldehyde dehydrogenase
375	 33.85	0	363268..363654	-	128	33239827	-	Pro0375	-	hypothetical protein
376	 37.04	0	363741..364982	-	413	33239828	-	Pro0376	-	flavoprotein
377	 27.27	-2	364990..365121	+	43	33239829	-	Pro0377	-	hypothetical protein
378	 30.83	-1	365281..366000	+	239	33239830	-	Pro0378	-	hypothetical protein
379	 43.17	+1	366104..366286	-	60	33239831	rub/hoxR	Pro0379	-	rubredoxin
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.