IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
216	 37.66	0	211027..212529	-	500	33239668	-	Pro0216	-	hypothetical protein
217	 39.43	0	212585..214915	-	776	33239669	spoT	Pro0217	-	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
218	 38.63	0	214959..216581	+	540	33239670	-	Pro0218	-	ATPase components of various ABC-type transport systems
219	 39.71	0	216593..217549	-	318	33239671	rluA	Pro0219	-	putative pseudouridylate synthase specific to ribosomal large subunit
220	 38.43	0	217549..218412	-	287	33239672	rbgA	Pro0220	-	ribosomal biogenesis GTPase
221	 39.78	0	218921..220129	+	402	33239673	pgk	Pro0221	-	phosphoglycerate kinase
222	 32.81	-1	220171..220941	-	256	33239674	-	Pro0222	-	hypothetical protein
223	 38.27	0	220991..222064	+	357	33239675	murG	Pro0223	-	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase
224	 37.83	0	222039..223172	-	377	33239676	hisC	Pro0224	-	histidinol-phosphate/aromatic aminotransferase related enzyme
225	 38.93	0	223163..224341	-	392	33239677	pyrD	Pro0225	-	dihydroorotate dehydrogenase 2
226	 38.55	0	224331..224828	-	165	33239678	rnhA	Pro0226	-	ribonuclease HI
227	 45.04	+2	224905..225297	-	130	33239679	rplL	Pro0227	-	50S ribosomal protein L7/L12
228	 42.05	+1	225357..225884	-	175	33239680	rplJ	Pro0228	-	50S ribosomal protein L10
229	 40.28	0	226123..226827	-	234	33239681	rplA	Pro0229	-	50S ribosomal protein L1
230	 43.43	+1	226918..227343	-	141	33239682	rplK	Pro0230	-	50S ribosomal protein L11
231	 40.30	0	227469..228128	-	219	33239683	nusG	Pro0231	-	transcription antitermination protein NusG
232	 43.21	+1	228175..228417	-	80	33239684	secE	Pro0232	-	preprotein translocase subunit SecE
233	 34.92	0	228501..231275	-	924	33239685	clpA	Pro0233	-	ATPase with chaperone activity, ATP-binding subunit
234	 38.06	0	231281..231682	-	133	33239686	gloA	Pro0234	-	lactoylglutathione lyase family protein
235	 39.41	0	231829..233127	+	432	33239687	eno	Pro0235	-	enolase
236	 36.13	0	233165..234844	-	559	33239688	aarF	Pro0236	-	putative kinase
237	 36.25	0	234841..235149	-	102	33239689	-	Pro0237	-	hypothetical protein
238	 36.86	0	235194..235760	-	188	33239690	-	Pro0238	-	hypothetical protein
239	 41.27	+1	236020..236976	+	318	33239691	trxB	Pro0239	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
240	 37.23	0	237032..237313	-	93	33239692	-	Pro0240	-	hypothetical protein
241	 37.25	0	237318..238313	-	331	33239693	-	Pro0241	-	permease
242	 40.10	0	238336..239991	-	551	33239694	SUL1	Pro0242	-	putative sulfate transporter
243	 38.61	0	240195..241199	+	334	33239695	hemB	Pro0243	-	delta-aminolevulinic acid dehydratase
244	 42.47	+1	241250..241654	+	134	33239696	-	Pro0244	-	lactoylglutathione lyase/catechol 2,3-dioxygenase related enzyme
245	 39.50	0	241674..244091	+	805	33239697	-	Pro0245	-	mismatch repair ATPase
246	 38.69	0	244212..245201	+	329	33239698	obgE	Pro0246	-	GTPase ObgE
247	 36.07	0	245284..245466	+	60	33239699	-	Pro0247	-	hypothetical protein
248	 40.18	0	245525..245743	-	72	33239700	-	Pro0248	-	hypothetical protein
249	 35.67	0	245950..246591	-	213	33239701	-	Pro0249	-	hypothetical protein
250	 37.73	0	246621..247598	-	325	33239702	ECM4	Pro0250	-	glutathione S-transferase
251	 36.90	0	247653..248576	+	307	33239703	aspA	Pro0251	-	aspartoacylase
252	 44.51	+1	248725..249807	+	360	33239704	psbA	Pro0252	-	photosystem II reaction center D1
253	 40.40	0	249977..251065	+	362	33239705	aroC	Pro0253	-	chorismate synthase
254	 32.32	-1	251069..251758	-	229	33239706	eda	Pro0254	-	2-keto-3-deoxy-6-phosphogluconate aldolase
255	 41.06	+1	251742..253541	-	599	33239707	ftsH	Pro0255	-	cell division protein FtsH2
256	 39.64	0	253642..254814	-	390	33239708	MET3	Pro0256	-	ATP-sulfurylase
257	 41.79	+1	254963..255754	-	263	33239709	psbO	Pro0257	-	photosystem II manganese-stabilizing protein
258	 38.93	0	255973..257259	-	428	33239710	dfp	Pro0258	-	phosphopantothenoylcysteine synthetase/decarboxylase
259	 37.33	0	257249..257473	-	74	33239711	-	Pro0259	-	hypothetical protein
260	 39.80	0	257725..257925	+	66	33239712	-	Pro0260	-	hypothetical protein
261	 29.76	-1	258008..258343	+	111	33239713	-	Pro0261	-	hypothetical protein
262	 38.54	0	258363..259379	-	338	33239714	pyrB	Pro0262	-	aspartate carbamoyltransferase catalytic subunit
263	 37.10	0	259376..260038	-	220	33239715	mpg	Pro0263	-	3-methyladenine DNA glycosylase
264	 39.83	0	260097..260897	+	266	33239716	-	Pro0264	-	amidase
265	 33.67	0	260894..261187	+	97	33239717	gatC	Pro0265	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
266	 35.46	0	261189..262223	-	344	33239718	crtR	Pro0266	-	Beta-carotene hydroxylase
267	 38.25	0	262583..263131	+	182	33239719	-	Pro0267	-	hypothetical protein
268	 35.50	0	263154..266063	+	969	33239720	ileS	Pro0268	-	isoleucyl-tRNA synthetase
269	 33.01	-1	266124..266750	-	208	33239721	-	Pro0269	-	hypothetical protein
270	 31.62	-1	266820..267461	+	213	33239722	trmB	Pro0270	-	tRNA (guanine-N(7))-methyltransferase
271	 35.28	0	267518..268903	-	461	33239723	manB	Pro0271	-	phosphomannomutase
272	 31.58	-1	269007..269576	+	189	33239724	trxA	Pro0272	-	thioredoxin family protein
273	 35.51	0	269573..270214	-	213	33239725	thyX	Pro0273	-	FAD-dependent thymidylate synthase
274	 36.87	0	270217..270810	-	197	33239726	dcd	Pro0274	-	deoxycytidine triphosphate deaminase
275	 38.81	0	270810..271412	-	200	33239727	ctuR	Pro0275	-	ATP:corrinoid adenosyltransferase
276	 35.78	0	271396..271599	-	67	33239728	-	Pro0276	-	hypothetical protein
277	 40.54	0	271665..272399	+	244	33239729	ntcA	Pro0277	-	global nitrogen regulatory protein
278	 32.41	-1	272462..273439	+	325	33239730	-	Pro0278	-	hypothetical protein
279	 31.74	-1	273455..273892	+	145	33239731	-	Pro0279	-	hypothetical protein
280	 36.82	0	273876..274133	-	85	33239732	-	Pro0280	-	hypothetical protein
281	 37.24	0	274138..274752	-	204	33239733	pth	Pro0281	-	peptidyl-tRNA hydrolase
282	 36.47	0	274777..275031	-	84	33239734	tatA	Pro0282	-	Sec-independent protein secretion pathway component TatA
283	 41.18	+1	275064..275267	-	67	33239735	psbH	Pro0283	-	photosystem II reaction center protein H
284	 40.43	0	275354..275494	+	46	33239736	psbN	Pro0284	-	photosystem II reaction center protein N
285	 46.51	+2	275624..275752	+	42	33239737	psbI	Pro0285	-	photosystem II reaction center I protein I
286	 30.27	-1	275871..277928	+	685	33239738	-	Pro0286	-	hypothetical protein
287	 34.94	0	277964..278587	-	207	33239739	leuD	Pro0287	-	3-isopropylmalate dehydratase small subunit
288	 41.08	+1	278616..280022	-	468	33239740	leuC	Pro0288	-	isopropylmalate isomerase large subunit
289	 35.06	0	280047..281318	-	423	33239741	cinA	Pro0289	-	CinA-like domain-containing protein
290	 38.25	0	281325..282584	-	419	33239742	glyA	Pro0290	-	serine hydroxymethyltransferase
291	 39.53	0	282855..283112	+	85	33239743	-	Pro0291	-	hypothetical protein
292	 39.18	0	283143..283433	+	96	33239744	-	Pro0292	-	hypothetical protein
293	 31.97	-1	283501..285117	-	538	33239745	mviN	Pro0293	-	hypothetical protein
294	 39.15	0	285201..285956	+	251	33239746	sfsA	Pro0294	-	putative sugar fermentation stimulation protein
295	 45.26	+2	286257..287765	+	502	33239747	amtB	Pro0295	-	ammonium transporter
296	 37.27	0	287863..289080	+	405	33239748	lytB	Pro0296	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
297	 39.54	0	289209..289772	+	187	33239749	-	Pro0297	-	hypothetical protein
298	 36.42	0	289813..291369	-	518	33239750	purH	Pro0298	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
299	 35.64	0	291429..292034	+	201	33239751	-	Pro0299	-	esterase
300	 41.19	+1	292047..292415	-	122	33239752	-	Pro0300	-	hypothetical protein
301	 38.61	0	292769..293887	+	372	33239753	caeS	Pro0301	-	two-component sensor histidine kinase
302	 35.00	0	293868..294647	-	259	33239754	cobS	Pro0302	-	cobalamin-5-phosphate synthase
303	 40.21	0	294742..295860	+	372	33239755	tgt	Pro0303	-	queuine/archaeosine tRNA-ribosyltransferase
304	 47.92	+2	295894..296037	+	47	33239756	psbK	Pro0304	-	photosystem II reaction center protein K
305	 40.40	0	296140..297144	-	334	33239757	mviM	Pro0305	-	putative oxidoreductase
306	 36.44	0	297180..298466	-	428	33239758	tlyC	Pro0306	-	hypothetical protein
307	 40.24	0	298667..299245	+	192	33239759	pyrE	Pro0307	-	orotate phosphoribosyltransferase
308	 32.50	-1	299247..300089	+	280	33239760	gcvT	Pro0308	-	aminomethyltransferase related to glycine cleavage protein T
309	 34.49	0	300107..301570	-	487	33239761	-	Pro0309	-	DNA repair protein
310	 38.25	0	301635..303077	+	480	33239762	manB	Pro0310	-	phosphomannomutase
311	 37.81	0	303074..303676	+	200	33239763	-	Pro0311	-	xanthosine triphosphate pyrophosphatase
312	 36.96	0	303715..305205	-	496	33239764	-	Pro0312	-	retinal pigment epithelial membrane protein
313	 39.49	0	305267..305899	-	210	33239765	hisB	Pro0313	-	imidazoleglycerol-phosphate dehydratase
314	 41.63	+1	305936..306718	-	260	33239766	fabI	Pro0314	-	enoyl-(acyl carrier protein) reductase
315	 36.55	0	306829..307449	+	206	33239767	trxA	Pro0315	-	thioredoxin family protein
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.