IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
166	 37.50	0	165530..166441	-	303	33239618	crtB	Pro0166	-	squalene and phytoene synthase
167	 35.89	0	166480..167889	-	469	33239619	pds	Pro0167	-	phytoene dehydrogenase, phytoene desaturase
168	 37.07	0	167991..168338	+	115	33239620	-	Pro0168	-	NADH dehydrogenase I subunit M
169	 39.56	0	168335..168976	+	213	33239621	-	Pro0169	-	hypothetical protein
170	 39.31	0	168990..169943	-	317	33239622	rbcR	Pro0170	-	putative Rubisco transcriptional regulator
171	 37.80	0	170042..170779	+	245	33239623	-	Pro0171	-	hypothetical protein
172	 39.47	0	170814..172817	+	667	33239624	ndhF	Pro0172	-	NAD(P)H-quinone oxidoreductase subunit F
173	 37.99	0	172918..174591	+	557	33239625	ndhD	Pro0173	-	NAD(P)H-quinone oxidoreductase subunit 4
174	 41.13	+1	174835..175719	+	294	33239626	-	Pro0174	-	hypothetical protein
175	 38.46	0	175769..176938	+	389	33239627	GCD1	Pro0175	-	putative sugar-phosphate nucleotidyl transferase
176	 39.04	0	176919..177812	-	297	33239628	metF	Pro0176	-	methylenetetrahydrofolate reductase
177	 39.36	0	177893..178174	+	93	33239629	csgD	Pro0177	-	transcriptional regulator
178	 40.80	0	178128..178328	-	66	33239630	-	Pro0178	-	hypothetical protein
179	 35.53	0	178421..178921	-	166	33239631	-	Pro0179	-	hypothetical protein
180	 36.58	0	178921..179844	-	307	33239632	ppnK	Pro0180	-	inorganic polyphosphate/ATP-NAD kinase
181	 33.33	0	179861..180187	-	108	33239633	ndhE	Pro0181	-	NADH dehydrogenase subunit K
182	 36.65	0	180220..180822	-	200	33239634	ndhG	Pro0182	-	NADH dehydrogenase subunit J
183	 34.85	0	180819..181478	-	219	33239635	ndhI	Pro0183	-	NADH dehydrogenase subunit I
184	 36.54	0	181602..182756	-	384	33239636	ndhA	Pro0184	-	NADH dehydrogenase subunit H
185	 42.41	+1	182790..183968	-	392	33239637	gltA	Pro0185	-	methylcitrate synthase
186	 28.59	-2	184043..185644	-	533	33239638	-	Pro0186	-	hypothetical protein
187	 38.42	0	185719..186072	+	117	33239639	pspE	Pro0187	-	rhodanese-related sulfurtransferase
188	 43.25	+1	186094..187344	-	416	33239640	trpB	Pro0188	-	tryptophan synthase subunit beta
189	 38.89	0	187391..187714	+	107	33239641	SUI1	Pro0189	-	translation initiation factor SUI1
190	 36.14	0	187783..188388	+	201	33239642	cysC	Pro0190	-	adenylylsulfate kinase
191	 39.02	0	188395..188886	-	163	33239643	purE	Pro0191	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
192	 37.39	0	189010..190167	+	385	33239644	nagA	Pro0192	-	N-acetylglucosamine-6-phosphate deacetylase
193	 35.99	0	190196..190909	+	237	33239645	chlM	Pro0193	-	Mg-protoporphyrin IX methyl transferase
194	 38.55	0	190935..191663	-	242	33239646	-	Pro0194	-	two-component response regulator
195	 35.76	0	191750..192901	+	383	33239647	nifS	Pro0195	-	cysteine desulfurase
196	 36.71	0	192903..193820	-	305	33239648	-	Pro0196	-	S-adenosylmethionine-dependent methyltransferase
197	 39.58	0	193865..195049	+	394	33239649	ndhH	Pro0197	-	NAD(P)H-quinone oxidoreductase subunit H
198	 37.82	0	195055..195522	+	155	33239650	fcbC	Pro0198	-	thioesterase
199	 37.90	0	195496..196743	-	415	33239651	menE	Pro0199	-	putative O-succinylbenzoic acid--CoA ligase (OSB-CoA synthetase)
200	 38.58	0	196740..197711	-	323	33239652	menC	Pro0200	-	O-succinylbenzoate-CoA synthase
201	 40.06	0	197720..198685	-	321	33239653	menA	Pro0201	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
202	 40.08	0	198765..200186	+	473	33239654	menF	Pro0202	-	isochorismate synthase
203	 40.02	0	200150..201076	-	308	33239655	rimK	Pro0203	-	glutathione synthetase
204	 35.98	0	201082..201345	-	87	33239656	grxC	Pro0204	-	glutaredoxin
205	 39.31	0	201482..202552	+	356	33239657	prfB	Pro0205	-	peptide chain release factor 2
206	 35.42	0	202558..202749	+	63	33239658	-	Pro0206	-	hypothetical protein
207	 34.69	0	202749..203336	+	195	33239659	-	Pro0207	-	metal-dependent hydrolase
208	 35.71	0	203336..203797	+	153	33239660	dgkA	Pro0208	-	diacylglycerol kinase
209	 40.46	0	203810..204412	+	200	33239661	pabA	Pro0209	-	anthranilate/para-aminobenzoate synthase component II
210	 38.08	0	204427..205164	+	245	33239662	-	Pro0210	-	hypothetical protein
211	 36.42	0	205148..206281	-	377	33239663	hisC	Pro0211	-	histidinol-phosphate aminotransferase
212	 37.09	0	206281..208092	-	603	33239664	argS	Pro0212	-	arginyl-tRNA synthetase
213	 39.35	0	208099..208962	-	287	33239665	nadC	Pro0213	-	nicotinate-nucleotide pyrophosphorylase:quinolinate phosphoriobsyl transferase
214	 37.28	0	209078..210445	-	455	33239666	trmE	Pro0214	-	tRNA modification GTPase TrmE
215	 35.73	0	210522..210980	+	152	33239667	-	Pro0215	-	hypothetical protein
216	 37.66	0	211027..212529	-	500	33239668	-	Pro0216	-	hypothetical protein
217	 39.43	0	212585..214915	-	776	33239669	spoT	Pro0217	-	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
218	 38.63	0	214959..216581	+	540	33239670	-	Pro0218	-	ATPase components of various ABC-type transport systems
219	 39.71	0	216593..217549	-	318	33239671	rluA	Pro0219	-	putative pseudouridylate synthase specific to ribosomal large subunit
220	 38.43	0	217549..218412	-	287	33239672	rbgA	Pro0220	-	ribosomal biogenesis GTPase
221	 39.78	0	218921..220129	+	402	33239673	pgk	Pro0221	-	phosphoglycerate kinase
222	 32.81	-1	220171..220941	-	256	33239674	-	Pro0222	-	hypothetical protein
223	 38.27	0	220991..222064	+	357	33239675	murG	Pro0223	-	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase
224	 37.83	0	222039..223172	-	377	33239676	hisC	Pro0224	-	histidinol-phosphate/aromatic aminotransferase related enzyme
225	 38.93	0	223163..224341	-	392	33239677	pyrD	Pro0225	-	dihydroorotate dehydrogenase 2
226	 38.55	0	224331..224828	-	165	33239678	rnhA	Pro0226	-	ribonuclease HI
227	 45.04	+2	224905..225297	-	130	33239679	rplL	Pro0227	-	50S ribosomal protein L7/L12
228	 42.05	+1	225357..225884	-	175	33239680	rplJ	Pro0228	-	50S ribosomal protein L10
229	 40.28	0	226123..226827	-	234	33239681	rplA	Pro0229	-	50S ribosomal protein L1
230	 43.43	+1	226918..227343	-	141	33239682	rplK	Pro0230	-	50S ribosomal protein L11
231	 40.30	0	227469..228128	-	219	33239683	nusG	Pro0231	-	transcription antitermination protein NusG
232	 43.21	+1	228175..228417	-	80	33239684	secE	Pro0232	-	preprotein translocase subunit SecE
233	 34.92	0	228501..231275	-	924	33239685	clpA	Pro0233	-	ATPase with chaperone activity, ATP-binding subunit
234	 38.06	0	231281..231682	-	133	33239686	gloA	Pro0234	-	lactoylglutathione lyase family protein
235	 39.41	0	231829..233127	+	432	33239687	eno	Pro0235	-	enolase
236	 36.13	0	233165..234844	-	559	33239688	aarF	Pro0236	-	putative kinase
237	 36.25	0	234841..235149	-	102	33239689	-	Pro0237	-	hypothetical protein
238	 36.86	0	235194..235760	-	188	33239690	-	Pro0238	-	hypothetical protein
239	 41.27	+1	236020..236976	+	318	33239691	trxB	Pro0239	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
240	 37.23	0	237032..237313	-	93	33239692	-	Pro0240	-	hypothetical protein
241	 37.25	0	237318..238313	-	331	33239693	-	Pro0241	-	permease
242	 40.10	0	238336..239991	-	551	33239694	SUL1	Pro0242	-	putative sulfate transporter
243	 38.61	0	240195..241199	+	334	33239695	hemB	Pro0243	-	delta-aminolevulinic acid dehydratase
244	 42.47	+1	241250..241654	+	134	33239696	-	Pro0244	-	lactoylglutathione lyase/catechol 2,3-dioxygenase related enzyme
245	 39.50	0	241674..244091	+	805	33239697	-	Pro0245	-	mismatch repair ATPase
246	 38.69	0	244212..245201	+	329	33239698	obgE	Pro0246	-	GTPase ObgE
247	 36.07	0	245284..245466	+	60	33239699	-	Pro0247	-	hypothetical protein
248	 40.18	0	245525..245743	-	72	33239700	-	Pro0248	-	hypothetical protein
249	 35.67	0	245950..246591	-	213	33239701	-	Pro0249	-	hypothetical protein
250	 37.73	0	246621..247598	-	325	33239702	ECM4	Pro0250	-	glutathione S-transferase
251	 36.90	0	247653..248576	+	307	33239703	aspA	Pro0251	-	aspartoacylase
252	 44.51	+1	248725..249807	+	360	33239704	psbA	Pro0252	-	photosystem II reaction center D1
253	 40.40	0	249977..251065	+	362	33239705	aroC	Pro0253	-	chorismate synthase
254	 32.32	-1	251069..251758	-	229	33239706	eda	Pro0254	-	2-keto-3-deoxy-6-phosphogluconate aldolase
255	 41.06	+1	251742..253541	-	599	33239707	ftsH	Pro0255	-	cell division protein FtsH2
256	 39.64	0	253642..254814	-	390	33239708	MET3	Pro0256	-	ATP-sulfurylase
257	 41.79	+1	254963..255754	-	263	33239709	psbO	Pro0257	-	photosystem II manganese-stabilizing protein
258	 38.93	0	255973..257259	-	428	33239710	dfp	Pro0258	-	phosphopantothenoylcysteine synthetase/decarboxylase
259	 37.33	0	257249..257473	-	74	33239711	-	Pro0259	-	hypothetical protein
260	 39.80	0	257725..257925	+	66	33239712	-	Pro0260	-	hypothetical protein
261	 29.76	-1	258008..258343	+	111	33239713	-	Pro0261	-	hypothetical protein
262	 38.54	0	258363..259379	-	338	33239714	pyrB	Pro0262	-	aspartate carbamoyltransferase catalytic subunit
263	 37.10	0	259376..260038	-	220	33239715	mpg	Pro0263	-	3-methyladenine DNA glycosylase
264	 39.83	0	260097..260897	+	266	33239716	-	Pro0264	-	amidase
265	 33.67	0	260894..261187	+	97	33239717	gatC	Pro0265	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.