IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1769	 39.09	0	1626184..1627590	-	468	33241220	thiC	Pro1771	-	thiamine biosynthesis protein ThiC
1770	 34.70	0	1627791..1628009	-	72	33241221	-	Pro1772	-	hypothetical protein
1771	 39.93	0	1628013..1629209	-	398	33241222	-	Pro1773	-	N-acyl-L-amino acid amidohydrolase
1772	 40.08	0	1629206..1629991	-	261	33241223	-	Pro1774	-	TPR repeat-containing protein
1773	 39.50	0	1629988..1631058	-	356	33241224	ruvB	Pro1775	-	Holliday junction DNA helicase B
1774	 34.34	0	1631109..1631606	+	165	33241225	smpB	Pro1776	-	SsrA-binding protein
1775	 33.33	0	1631651..1631881	+	76	33241226	-	Pro1777	-	hypothetical protein
1776	 49.24	+2	1632035..1632298	-	87	33241227	-	Pro1778	-	hypothetical protein
1777	 39.23	0	1632353..1633861	-	502	33241228	lysS	Pro1779	-	lysyl-tRNA synthetase
1778	 43.46	+1	1633934..1634743	-	269	33241229	-	Pro1780	-	two-component response regulator
1779	 36.31	0	1634977..1635480	-	167	33241230	-	Pro1781	-	hypothetical protein
1780	 36.41	0	1635477..1636223	-	248	33241231	mreC	Pro1782	-	cell shape-determining protein
1781	 42.45	+1	1636228..1637280	-	350	33241232	mreB	Pro1783	-	Actin-like ATPase
1782	 34.87	0	1637412..1637801	+	129	33241233	ssb	Pro1784	-	single-strand DNA-binding protein
1783	 35.46	0	1637798..1638454	-	218	33241234	dedA	Pro1785	-	hypothetical protein
1784	 37.04	0	1638488..1639918	-	476	33241235	SAM1	Pro1786	-	S-adenosyl-L-homocysteine hydrolase
1785	 36.09	0	1639954..1640460	+	168	33241236	-	Pro1787	-	P-loop hydrolase
1786	 40.22	0	1640409..1641425	-	338	33241237	rbsK	Pro1788	-	ribokinase family sugar kinase
1787	 35.41	0	1641463..1642665	-	400	33241238	mutY	Pro1789	-	A/G-specific DNA glycosylase
1788	 33.00	-1	1642645..1643556	+	303	33241239	mhpC	Pro1790	-	putative alpha/beta hydrolase superfamily
1789	 37.99	0	1643541..1644527	-	328	33241240	rpoD	Pro1791	-	DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
1790	 41.10	+1	1644650..1646065	-	471	33241241	mgtE	Pro1792	-	Mg2+/Co2+ transporter
1791	 33.60	0	1646098..1646472	-	124	33241242	crcB	Pro1793	-	hypothetical protein
1792	 29.01	-2	1646465..1646857	-	130	33241243	crcB	Pro1794	-	hypothetical protein
1793	 36.06	0	1646850..1647179	-	109	33241244	-	Pro1795	-	hypothetical protein
1794	 36.87	0	1647189..1649165	-	658	33241245	gyrB	Pro1796	-	DNA gyrase subunit B
1795	 34.67	0	1649336..1650235	+	299	33241246	miaA	Pro1797	-	tRNA delta-2-isopentenylpyrophosphate transferase
1796	 38.94	0	1650298..1650903	+	201	33241247	infC	Pro1798	-	translation initiation factor IF-3
1797	 39.41	0	1651060..1652046	+	328	33241248	-	Pro1799	-	transcriptional regulator
1798	 38.55	0	1652066..1652812	+	248	33241249	cysE	Pro1800	-	Serine acetyltransferase
1799	 37.49	0	1652820..1655660	-	946	33241250	secA	Pro1801	-	preprotein translocase subunit SecA
1800	 37.23	0	1655799..1656260	+	153	33241251	wecD	Pro1802	-	putative acetyltransferase, GNAT family
1801	 36.69	0	1656447..1656923	-	158	33241252	ribH	Pro1803	-	riboflavin synthase subunit beta
1802	 37.37	0	1656981..1657178	-	65	33241253	-	Pro1804	-	putative photosystem II reaction center protein Z
1803	 35.12	0	1657339..1660083	+	914	33241254	mutS	Pro1805	-	DNA mismatch repair protein
1804	 38.91	0	1660088..1660750	-	220	33241255	cobH	Pro1806	-	precorrin isomerase
1805	 34.32	0	1660814..1661830	+	338	33241256	holA	Pro1807	-	DNA polymerase III subunit delta
1806	 39.42	0	1661867..1663624	+	585	33241257	lysC	Pro1808	-	aspartate kinase
1807	 34.32	0	1663657..1665690	-	677	33241258	uvrB	Pro1809	-	excinuclease ABC subunit B
1808	 39.46	0	1665781..1666563	-	260	33241259	-	Pro1810	-	hypothetical protein
1809	 36.50	0	1666648..1667658	+	336	33241260	mesJ	Pro1811	-	ATPase
1810	 40.33	0	1667692..1669635	-	647	33241261	-	Pro1812	-	metallo-beta-lactamase superfamily hydrolase
1811	 41.25	+1	1669718..1670626	-	302	33241262	dapA	Pro1813	-	dihydrodipicolinate synthase
1812	 35.85	0	1670623..1671654	-	343	33241263	asd	Pro1814	-	aspartate-semialdehyde dehydrogenase
1813	 34.76	0	1671820..1673223	+	467	33241264	tig	Pro1815	-	trigger factor
1814	 41.32	+1	1673273..1673923	+	216	33241265	clpP	Pro1816	-	protease subunit of ATP-dependent Clp protease
1815	 36.95	0	1674037..1675389	+	450	33241266	clpX	Pro1817	-	ATP-dependent protease ATP-binding subunit
1816	 33.51	0	1675533..1677212	+	559	33241267	dnaX	Pro1818	-	DNA polymerase III gamma/tau subunit
1817	 36.45	0	1677223..1678536	-	437	33241268	-	Pro1819	-	glycosyl transferase, family 2
1818	 37.30	0	1678583..1680121	-	512	33241269	spoIID	Pro1820	-	putative amidase enhancer
1819	 45.96	+2	1680231..1680428	+	65	33241270	rpmI	Pro1821	-	50S ribosomal protein L35
1820	 38.22	0	1680493..1680840	+	115	33241271	rplT	Pro1822	-	50S ribosomal protein L20
1821	 30.29	-1	1680948..1681505	+	185	33241272	-	Pro1823	-	TPR repeat-containing protein
1822	 38.60	0	1681521..1682336	+	271	33241273	thiG	Pro1824	-	thiazole synthase
1823	 33.94	0	1682409..1682573	+	54	33241274	hli14	Pro1825	-	HLIP family protein
1824	 40.52	0	1682637..1683833	+	398	33241275	wcaG	Pro1826	-	sulfolipid (UDP-sulfoquinovose) biosynthesis protein
1825	 39.91	0	1683843..1684997	+	384	33241276	rfaG	Pro1827	-	SqdX
1826	 41.25	+1	1685012..1685314	-	100	33241277	-	Pro1828	-	hypothetical protein
1827	 37.13	0	1685403..1688297	-	964	33241278	gcvP	Pro1829	-	glycine dehydrogenase
1828	 37.69	0	1688331..1688720	-	129	33241279	gcvH	Pro1830	-	glycine cleavage system H protein
1829	 35.65	0	1688756..1690048	-	430	33241280	-	Pro1831	-	cystathionine beta-lyase family aluminum resistance protein
1830	 37.20	0	1690045..1690794	-	249	33241281	-	Pro1832	-	hypothetical protein
1831	 42.34	+1	1690865..1691797	+	310	33241282	OLE1	Pro1833	-	Fatty acid desaturase, type 1
1832	 39.00	0	1691866..1692324	+	152	33241283	rplI	Pro1834	-	50S ribosomal protein L9
1833	 38.84	0	1692385..1693800	+	471	33241284	dnaB	Pro1835	-	DnaB replicative helicase
1834	 37.38	0	1693840..1695843	+	667	33241285	gidA	Pro1836	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1835	 40.04	0	1695924..1696430	+	168	33241286	ubiC	Pro1837	-	chorismate lyase
1836	 41.47	+1	1696436..1696951	-	171	33241287	-	Pro1838	-	hypothetical protein
1837	 39.89	0	1697056..1697604	-	182	33241288	-	Pro1839	-	metal-dependent protease
1838	 39.01	0	1697731..1698153	+	140	33241289	-	Pro1840	-	hypothetical protein
1839	 36.10	0	1698178..1700235	+	685	33241290	ligA	Pro1841	-	NAD-dependent DNA ligase LigA
1840	 26.42	-2	1700240..1700398	+	52	33241291	-	Pro1842	-	hypothetical protein
1841	 30.27	-1	1700395..1701015	-	206	33241292	-	Pro1843	-	hypothetical protein
1842	 39.44	0	1701033..1703834	-	933	33241293	valS	Pro1844	-	valyl-tRNA synthetase
1843	 33.33	0	1703899..1704357	-	152	33241294	-	Pro1845	-	hypothetical protein
1844	 38.10	0	1704422..1704673	+	83	33241295	-	Pro1846	-	hypothetical protein
1845	 31.53	-1	1705247..1706077	+	276	33241296	-	Pro1847	-	pyrophosphatase
1846	 33.80	0	1706106..1706969	+	287	33241297	speE	Pro1848	-	spermidine synthase
1847	 33.33	0	1706966..1707877	+	303	33241298	speB	Pro1849	-	arginase
1848	 32.90	-1	1707913..1708143	-	76	33241299	-	Pro1850	-	metal-binding cluster containing protein
1849	 37.97	0	1708285..1709406	+	373	33241300	gcvT	Pro1851	-	glycine cleavage system aminomethyltransferase T
1850	 39.49	0	1709479..1711296	+	605	33241301	aspS	Pro1852	-	aspartyl-tRNA synthetase
1851	 38.71	0	1711409..1713064	+	551	33241302	pyrG	Pro1853	-	CTP synthetase
1852	 37.32	0	1713061..1713738	+	225	33241303	nrdG	Pro1854	-	putative organic radical activating protein
1853	 37.43	0	1713805..1714488	+	227	33241304	-	Pro1855	-	PP-loop superfamily ATPase
1854	 36.03	0	1714491..1715825	+	444	33241305	trpE	Pro1856	-	putative p-aminobenzoate synthetase
1855	 35.48	0	1715822..1716661	+	279	33241306	-	Pro1857	-	4-amino-4-deoxychorismate lyase related type IV aminotransferase
1856	 38.80	0	1716658..1717443	-	261	33241307	cysG	Pro1858	-	uroporphyrin-III c-methyltransferase
1857	 37.59	0	1717442..1718497	+	351	33241308	trpD	Pro1859	-	hypothetical protein
1858	 35.77	0	1718532..1719023	-	163	33241309	wecD	Pro1860	-	acetyltransferase
1859	 37.86	0	1719055..1720314	+	419	33241310	proP	Pro1861	-	major facilitator superfamily permease
1860	 33.66	0	1720403..1722514	+	703	33241311	ppk	Pro1862	-	polyphosphate kinase
1861	 40.88	0	1722731..1723750	+	339	33241312	rpoD	Pro1863	-	DNA-directed RNA polymerase sigma subunit
1862	 34.25	0	1723759..1724412	+	217	33241313	SEC59	Pro1864	-	dolichol kinase
1863	 37.43	0	1724418..1725491	-	357	33241314	aroG	Pro1865	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1864	 37.42	0	1725643..1728234	+	863	33241315	acnB	Pro1866	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1865	 38.68	0	1728235..1729638	+	467	33241316	eriC	Pro1867	-	chloride channel protein EriC
1866	 36.68	0	1729704..1731257	+	517	33241317	-	Pro1868	-	SAM radical enzyme
1867	 38.04	0	1731226..1732521	-	431	33241318	rfaL	Pro1869	-	Lipid A core O-antigen ligase related enzyme
1868	 36.10	0	1732706..1733788	+	360	33241319	-	Pro1870	-	FAD dependent oxidoreductase
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.