IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1734	 39.81	0	1589731..1590810	-	359	33241185	mrp	Pro1736	-	ATPase
1735	 39.83	0	1590897..1591928	+	343	33241186	hemF	Pro1737	-	coproporphyrinogen III oxidase
1736	 39.05	0	1591876..1592697	-	273	33241187	-	Pro1738	-	dehydrogenase
1737	 38.74	0	1592704..1593258	-	184	33241188	-	Pro1739	-	hypothetical protein
1738	 36.28	0	1593460..1594104	+	214	33241189	rnd	Pro1740	-	putative ribonuclease D
1739	 31.48	-1	1594101..1594370	-	89	33241190	-	Pro1741	-	hypothetical protein
1740	 39.59	0	1594423..1595700	-	425	33241191	-	Pro1742	-	Lipid A disaccharide synthetase related enzyme
1741	 35.76	0	1596595..1596759	-	54	33241192	-	Pro1743	-	Zn ribbon-like protein
1742	 42.19	+1	1596781..1597401	-	206	33241193	-	Pro1744	-	hypothetical protein
1743	 39.98	0	1597573..1598610	-	345	33241194	purM	Pro1745	-	phosphoribosylaminoimidazole synthetase
1744	 36.79	0	1598748..1600307	+	519	33241195	cmk	Pro1746	-	bifunctional pantoate ligase/cytidylate kinase
1745	 32.91	-1	1600300..1600770	-	156	33241196	wzb	Pro1747	-	protein-tyrosine-phosphatase
1746	 33.20	0	1600861..1601634	-	257	33241197	pebB	Pro1748	-	phycoerythrobilin:ferredoxin oxidoreductase
1747	 33.75	0	1601635..1602348	-	237	161407959	pebA	Pro1749	-	dihydrobiliverdin:ferredoxin oxidoreductase
1748	 34.17	0	1602445..1603158	-	237	33241199	ho1	Pro1750	-	Heme oxygenase
1749	 42.25	+1	1603248..1603673	-	141	33241200	-	Pro1751	-	hypothetical protein
1750	 36.63	0	1603833..1605257	+	474	33241201	icd	Pro1752	-	isocitrate dehydrogenase
1751	 32.38	-1	1605278..1606636	-	452	33241202	-	Pro1753	-	hypothetical protein
1752	 42.20	+1	1606671..1607843	-	390	33241203	lldD	Pro1754	-	L-lactate dehydrogenase (FMN-dependent) related enzyme
1753	 31.98	-1	1607961..1609661	-	566	33241204	dld	Pro1755	-	D-lactate dehydrogenase
1754	 34.73	0	1609784..1610641	-	285	33241205	galM	Pro1756	-	galactose mutarotase-like protein
1755	 39.29	0	1610658..1611563	-	301	33241206	mhpC	Pro1757	-	alpha/beta fold family hydrolase
1756	 40.03	0	1611686..1613059	-	457	33241207	kefB	Pro1758	-	Na+/H+ antiporter
1757	 37.38	0	1613224..1615746	+	840	33241208	glgP	Pro1759	-	phosphorylase
1758	 37.47	0	1615754..1616212	-	152	33241209	-	Pro1760	-	hypothetical protein
1759	 42.42	+1	1616283..1616579	-	98	33241210	-	Pro1761	-	hypothetical protein
1760	 36.80	0	1617217..1617966	+	249	33241211	rnc	Pro1762	-	dsRNA-specific ribonuclease/ribonuclease III
1761	 34.41	0	1617963..1618148	-	61	33241212	-	Pro1763	-	hypothetical protein
1762	 34.27	0	1618196..1618726	+	176	33241213	rimM	Pro1764	-	16S rRNA-processing protein
1763	 36.33	0	1618775..1620211	+	478	33241214	manC	Pro1765	-	mannose-1-phosphate guanylyltransferase
1764	 37.64	0	1620235..1622139	-	634	33241215	glmS	Pro1766	-	D-fructose-6-phosphate amidotransferase
1765	 46.75	+2	1622219..1622464	-	81	33241216	psaC	Pro1767	-	photosystem I subunit VII
1766	 44.44	+1	1622599..1622841	+	80	33241217	acpP	Pro1768	-	acyl carrier protein
1767	 43.03	+1	1622849..1624096	+	415	33241218	fabB	Pro1769	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1768	 40.60	0	1624148..1626157	+	669	33241219	tktA	Pro1770	-	transketolase
1769	 39.09	0	1626184..1627590	-	468	33241220	thiC	Pro1771	-	thiamine biosynthesis protein ThiC
1770	 34.70	0	1627791..1628009	-	72	33241221	-	Pro1772	-	hypothetical protein
1771	 39.93	0	1628013..1629209	-	398	33241222	-	Pro1773	-	N-acyl-L-amino acid amidohydrolase
1772	 40.08	0	1629206..1629991	-	261	33241223	-	Pro1774	-	TPR repeat-containing protein
1773	 39.50	0	1629988..1631058	-	356	33241224	ruvB	Pro1775	-	Holliday junction DNA helicase B
1774	 34.34	0	1631109..1631606	+	165	33241225	smpB	Pro1776	-	SsrA-binding protein
1775	 33.33	0	1631651..1631881	+	76	33241226	-	Pro1777	-	hypothetical protein
1776	 49.24	+2	1632035..1632298	-	87	33241227	-	Pro1778	-	hypothetical protein
1777	 39.23	0	1632353..1633861	-	502	33241228	lysS	Pro1779	-	lysyl-tRNA synthetase
1778	 43.46	+1	1633934..1634743	-	269	33241229	-	Pro1780	-	two-component response regulator
1779	 36.31	0	1634977..1635480	-	167	33241230	-	Pro1781	-	hypothetical protein
1780	 36.41	0	1635477..1636223	-	248	33241231	mreC	Pro1782	-	cell shape-determining protein
1781	 42.45	+1	1636228..1637280	-	350	33241232	mreB	Pro1783	-	Actin-like ATPase
1782	 34.87	0	1637412..1637801	+	129	33241233	ssb	Pro1784	-	single-strand DNA-binding protein
1783	 35.46	0	1637798..1638454	-	218	33241234	dedA	Pro1785	-	hypothetical protein
1784	 37.04	0	1638488..1639918	-	476	33241235	SAM1	Pro1786	-	S-adenosyl-L-homocysteine hydrolase
1785	 36.09	0	1639954..1640460	+	168	33241236	-	Pro1787	-	P-loop hydrolase
1786	 40.22	0	1640409..1641425	-	338	33241237	rbsK	Pro1788	-	ribokinase family sugar kinase
1787	 35.41	0	1641463..1642665	-	400	33241238	mutY	Pro1789	-	A/G-specific DNA glycosylase
1788	 33.00	-1	1642645..1643556	+	303	33241239	mhpC	Pro1790	-	putative alpha/beta hydrolase superfamily
1789	 37.99	0	1643541..1644527	-	328	33241240	rpoD	Pro1791	-	DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
1790	 41.10	+1	1644650..1646065	-	471	33241241	mgtE	Pro1792	-	Mg2+/Co2+ transporter
1791	 33.60	0	1646098..1646472	-	124	33241242	crcB	Pro1793	-	hypothetical protein
1792	 29.01	-2	1646465..1646857	-	130	33241243	crcB	Pro1794	-	hypothetical protein
1793	 36.06	0	1646850..1647179	-	109	33241244	-	Pro1795	-	hypothetical protein
1794	 36.87	0	1647189..1649165	-	658	33241245	gyrB	Pro1796	-	DNA gyrase subunit B
1795	 34.67	0	1649336..1650235	+	299	33241246	miaA	Pro1797	-	tRNA delta-2-isopentenylpyrophosphate transferase
1796	 38.94	0	1650298..1650903	+	201	33241247	infC	Pro1798	-	translation initiation factor IF-3
1797	 39.41	0	1651060..1652046	+	328	33241248	-	Pro1799	-	transcriptional regulator
1798	 38.55	0	1652066..1652812	+	248	33241249	cysE	Pro1800	-	Serine acetyltransferase
1799	 37.49	0	1652820..1655660	-	946	33241250	secA	Pro1801	-	preprotein translocase subunit SecA
1800	 37.23	0	1655799..1656260	+	153	33241251	wecD	Pro1802	-	putative acetyltransferase, GNAT family
1801	 36.69	0	1656447..1656923	-	158	33241252	ribH	Pro1803	-	riboflavin synthase subunit beta
1802	 37.37	0	1656981..1657178	-	65	33241253	-	Pro1804	-	putative photosystem II reaction center protein Z
1803	 35.12	0	1657339..1660083	+	914	33241254	mutS	Pro1805	-	DNA mismatch repair protein
1804	 38.91	0	1660088..1660750	-	220	33241255	cobH	Pro1806	-	precorrin isomerase
1805	 34.32	0	1660814..1661830	+	338	33241256	holA	Pro1807	-	DNA polymerase III subunit delta
1806	 39.42	0	1661867..1663624	+	585	33241257	lysC	Pro1808	-	aspartate kinase
1807	 34.32	0	1663657..1665690	-	677	33241258	uvrB	Pro1809	-	excinuclease ABC subunit B
1808	 39.46	0	1665781..1666563	-	260	33241259	-	Pro1810	-	hypothetical protein
1809	 36.50	0	1666648..1667658	+	336	33241260	mesJ	Pro1811	-	ATPase
1810	 40.33	0	1667692..1669635	-	647	33241261	-	Pro1812	-	metallo-beta-lactamase superfamily hydrolase
1811	 41.25	+1	1669718..1670626	-	302	33241262	dapA	Pro1813	-	dihydrodipicolinate synthase
1812	 35.85	0	1670623..1671654	-	343	33241263	asd	Pro1814	-	aspartate-semialdehyde dehydrogenase
1813	 34.76	0	1671820..1673223	+	467	33241264	tig	Pro1815	-	trigger factor
1814	 41.32	+1	1673273..1673923	+	216	33241265	clpP	Pro1816	-	protease subunit of ATP-dependent Clp protease
1815	 36.95	0	1674037..1675389	+	450	33241266	clpX	Pro1817	-	ATP-dependent protease ATP-binding subunit
1816	 33.51	0	1675533..1677212	+	559	33241267	dnaX	Pro1818	-	DNA polymerase III gamma/tau subunit
1817	 36.45	0	1677223..1678536	-	437	33241268	-	Pro1819	-	glycosyl transferase, family 2
1818	 37.30	0	1678583..1680121	-	512	33241269	spoIID	Pro1820	-	putative amidase enhancer
1819	 45.96	+2	1680231..1680428	+	65	33241270	rpmI	Pro1821	-	50S ribosomal protein L35
1820	 38.22	0	1680493..1680840	+	115	33241271	rplT	Pro1822	-	50S ribosomal protein L20
1821	 30.29	-1	1680948..1681505	+	185	33241272	-	Pro1823	-	TPR repeat-containing protein
1822	 38.60	0	1681521..1682336	+	271	33241273	thiG	Pro1824	-	thiazole synthase
1823	 33.94	0	1682409..1682573	+	54	33241274	hli14	Pro1825	-	HLIP family protein
1824	 40.52	0	1682637..1683833	+	398	33241275	wcaG	Pro1826	-	sulfolipid (UDP-sulfoquinovose) biosynthesis protein
1825	 39.91	0	1683843..1684997	+	384	33241276	rfaG	Pro1827	-	SqdX
1826	 41.25	+1	1685012..1685314	-	100	33241277	-	Pro1828	-	hypothetical protein
1827	 37.13	0	1685403..1688297	-	964	33241278	gcvP	Pro1829	-	glycine dehydrogenase
1828	 37.69	0	1688331..1688720	-	129	33241279	gcvH	Pro1830	-	glycine cleavage system H protein
1829	 35.65	0	1688756..1690048	-	430	33241280	-	Pro1831	-	cystathionine beta-lyase family aluminum resistance protein
1830	 37.20	0	1690045..1690794	-	249	33241281	-	Pro1832	-	hypothetical protein
1831	 42.34	+1	1690865..1691797	+	310	33241282	OLE1	Pro1833	-	Fatty acid desaturase, type 1
1832	 39.00	0	1691866..1692324	+	152	33241283	rplI	Pro1834	-	50S ribosomal protein L9
1833	 38.84	0	1692385..1693800	+	471	33241284	dnaB	Pro1835	-	DnaB replicative helicase
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.